Wall clock time and date at job start Mon Mar 30 2020 04:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99979 * 2 1 4 4 H 1.48495 * 109.47253 * 240.00245 * 3 2 1 5 5 H 1.48504 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47341 * 119.99824 * 3 2 1 7 7 C 1.37870 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47021 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46872 * 179.97438 * 10 9 7 12 12 C 1.53011 * 109.47114 * 179.97438 * 11 10 9 13 13 S 1.81393 * 109.47000 * 179.97438 * 12 11 10 14 14 O 1.42093 * 109.47452 * 289.05837 * 13 12 11 15 15 C 1.76201 * 102.99799 * 180.02562 * 13 12 11 16 16 N 1.31820 * 119.67103 * 262.35800 * 15 13 12 17 17 C 1.31856 * 121.79695 * 179.72809 * 16 15 13 18 18 C 1.38272 * 120.92758 * 0.54054 * 17 16 15 19 19 C 1.38495 * 119.24196 * 359.45088 * 18 17 16 20 20 C 1.38889 * 119.67049 * 82.33496 * 15 13 12 21 21 N 1.39704 * 120.49398 * 359.97438 * 20 15 13 22 22 H 0.97001 * 120.00001 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46947 * 59.99706 * 9 7 2 24 24 H 1.09000 * 109.47169 * 299.99844 * 9 7 2 25 25 H 1.08999 * 109.47529 * 60.00027 * 10 9 7 26 26 H 1.08996 * 109.47257 * 299.99478 * 10 9 7 27 27 H 1.08997 * 109.47501 * 60.00269 * 11 10 9 28 28 H 1.09000 * 109.47337 * 299.99819 * 11 10 9 29 29 H 1.09006 * 109.46252 * 60.00235 * 12 11 10 30 30 H 1.09000 * 109.47198 * 300.00304 * 12 11 10 31 31 H 1.07996 * 119.53526 * 180.26731 * 17 16 15 32 32 H 1.08000 * 120.37843 * 179.72301 * 18 17 16 33 33 H 1.08004 * 120.81896 * 180.30330 * 19 18 17 34 34 H 0.97001 * 119.99834 * 341.44566 * 21 20 15 35 35 H 0.96998 * 119.99950 * 161.45292 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4745 -6.1500 -0.0024 13 16 1.5675 -7.7209 -0.0023 14 8 0.9522 -7.9125 1.2641 15 6 2.8562 -8.9226 -0.0020 16 7 3.2296 -9.4792 -1.1371 17 6 4.1924 -10.3787 -1.1860 18 6 4.8454 -10.7841 -0.0366 19 6 4.4860 -10.2252 1.1785 20 6 3.4686 -9.2736 1.1941 21 7 3.0708 -8.6808 2.3950 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5562 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 2.8713 -3.6047 0.8890 26 1 2.8726 -3.6039 -0.8909 27 1 0.8540 -5.0447 -0.8922 28 1 0.8532 -5.0449 0.8877 29 1 3.1011 -6.0925 0.8878 30 1 3.1013 -6.0919 -0.8923 31 1 4.4720 -10.8081 -2.1367 32 1 5.6298 -11.5248 -0.0864 33 1 4.9824 -10.5196 2.0914 34 1 2.5723 -7.8488 2.3833 35 1 3.2932 -9.1012 3.2404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385411004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:57 Heat of formation + Delta-G solvation = -18.884648 kcal Electronic energy + Delta-G solvation = -17392.771498 eV Core-core repulsion = 14516.742784 eV Total energy + Delta-G solvation = -2876.028714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24875 -36.27371 -35.15680 -34.91995 -32.63004 -32.30511 -29.48807 -29.21857 -25.33523 -24.19103 -23.08467 -21.96656 -20.12342 -18.41077 -17.79654 -17.19363 -16.60995 -16.18615 -15.53004 -15.09974 -14.85432 -14.57338 -14.41536 -13.97492 -13.46433 -13.25912 -12.74088 -12.64908 -12.12842 -11.81108 -11.74009 -11.40429 -11.00966 -10.80402 -10.63738 -10.49579 -10.44535 -9.97547 -9.77878 -9.66405 -9.25225 -9.02938 -8.32529 -8.31020 -8.03474 -5.97528 -3.99967 0.63932 1.19989 1.64246 2.66644 3.34408 3.38715 3.41197 3.42512 3.58735 3.86465 4.47625 4.53804 4.61420 4.79624 5.03161 5.13059 5.21477 5.26863 5.37976 5.56345 5.79145 5.85258 5.98756 6.19869 6.29852 6.42116 6.73328 6.89601 7.02992 7.14591 7.42605 7.70204 7.70801 7.85648 8.02913 8.45641 9.07095 9.63856 11.13755 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.003299 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.843203 B = 8486.228863 C = 8628.196531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.019 3.981 10 C -0.104 4.104 11 C -0.100 4.100 12 C -0.445 4.445 13 S 1.349 4.651 14 O -0.852 6.852 15 C -0.308 4.308 16 N -0.376 5.376 17 C 0.022 3.978 18 C -0.094 4.094 19 C -0.171 4.171 20 C 0.222 3.778 21 N -0.858 5.858 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.015 0.985 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.411 0.589 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -22.608 -1.490 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.019 4.019 10 C -0.143 4.143 11 C -0.139 4.139 12 C -0.584 4.584 13 S 1.546 4.454 14 O -0.846 6.846 15 C -0.544 4.544 16 N -0.085 5.085 17 C -0.142 4.142 18 C -0.114 4.114 19 C -0.203 4.203 20 C 0.109 3.891 21 N -0.400 5.400 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.176 0.824 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.246 0.754 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.109 -22.398 -2.218 23.322 hybrid contribution 2.573 0.829 2.982 4.025 sum 8.682 -21.569 0.764 23.263 Atomic orbital electron populations 1.69954 1.06026 1.26679 1.50835 1.25026 0.94853 0.99210 0.95382 0.86667 0.79591 0.83209 0.78577 1.20214 1.21271 1.20351 1.21236 0.92976 0.91201 1.50601 0.92842 1.19129 0.94074 0.91325 0.97326 1.21624 0.99015 0.93329 1.00345 1.21315 0.96727 0.93466 1.02375 1.27834 1.09668 1.13417 1.07468 1.69935 0.84383 0.82748 1.08293 1.92967 1.63824 1.82587 1.45255 1.29798 1.16202 1.17240 0.91146 1.67447 1.10164 1.04954 1.25960 1.22686 0.95436 0.97574 0.98499 1.22070 0.98668 0.97809 0.92887 1.21238 0.98643 1.00968 0.99401 1.18816 0.90660 0.91677 0.87955 1.42993 1.63156 1.29220 1.04656 0.92950 0.96327 0.96662 0.93715 0.93061 0.90915 0.92008 0.90231 0.86446 0.82361 0.84684 0.84977 0.75395 0.77217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.10 -2.14 5.15 -26.73 -0.14 -2.28 16 11 C -0.10 -1.64 5.22 -26.72 -0.14 -1.78 16 12 C -0.45 -5.95 5.88 37.16 0.22 -5.73 16 13 S 1.35 16.23 13.34 -107.50 -1.43 14.79 16 14 O -0.85 -13.69 14.82 -35.23 -0.52 -14.22 16 15 C -0.31 -3.87 6.52 -17.32 -0.11 -3.98 16 16 N -0.38 -4.39 10.29 -12.28 -0.13 -4.52 16 17 C 0.02 0.21 11.18 -17.53 -0.20 0.02 16 18 C -0.09 -0.80 10.10 -39.47 -0.40 -1.19 16 19 C -0.17 -1.70 10.07 -39.09 -0.39 -2.09 16 20 C 0.22 2.72 6.70 -83.63 -0.56 2.16 16 21 N -0.86 -10.18 8.29 32.49 0.27 -9.91 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.12 8.02 -51.92 -0.42 0.70 16 30 H 0.12 1.40 8.14 -51.92 -0.42 0.98 16 31 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.41 5.52 6.03 -40.82 -0.25 5.27 16 35 H 0.40 3.68 8.90 -40.82 -0.36 3.32 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -35.33 311.41 -8.47 -43.79 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.79 Total: 3.29 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -2.27 Total: -28.31 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.88 Total: -40.89 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.52 Total: -14.22 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 16.23 SS G_CDS: -1.43 Total: 14.79 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.33 -8.47 -43.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385411004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.910 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds