Wall clock time and date at job start Mon Mar 30 2020 04:45:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 119.99979 * 2 1
4 4 H 1.48495 * 109.47253 * 240.00245 * 3 2 1
5 5 H 1.48504 * 109.47101 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47341 * 119.99824 * 3 2 1
7 7 C 1.37870 * 120.00014 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00080 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00038 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.47021 * 180.02562 * 9 7 2
11 11 C 1.53003 * 109.46872 * 179.97438 * 10 9 7
12 12 C 1.53011 * 109.47114 * 179.97438 * 11 10 9
13 13 S 1.81393 * 109.47000 * 179.97438 * 12 11 10
14 14 O 1.42093 * 109.47452 * 289.05837 * 13 12 11
15 15 C 1.76201 * 102.99799 * 180.02562 * 13 12 11
16 16 N 1.31820 * 119.67103 * 262.35800 * 15 13 12
17 17 C 1.31856 * 121.79695 * 179.72809 * 16 15 13
18 18 C 1.38272 * 120.92758 * 0.54054 * 17 16 15
19 19 C 1.38495 * 119.24196 * 359.45088 * 18 17 16
20 20 C 1.38889 * 119.67049 * 82.33496 * 15 13 12
21 21 N 1.39704 * 120.49398 * 359.97438 * 20 15 13
22 22 H 0.97001 * 120.00001 * 359.97438 * 1 2 3
23 23 H 1.08999 * 109.46947 * 59.99706 * 9 7 2
24 24 H 1.09000 * 109.47169 * 299.99844 * 9 7 2
25 25 H 1.08999 * 109.47529 * 60.00027 * 10 9 7
26 26 H 1.08996 * 109.47257 * 299.99478 * 10 9 7
27 27 H 1.08997 * 109.47501 * 60.00269 * 11 10 9
28 28 H 1.09000 * 109.47337 * 299.99819 * 11 10 9
29 29 H 1.09006 * 109.46252 * 60.00235 * 12 11 10
30 30 H 1.09000 * 109.47198 * 300.00304 * 12 11 10
31 31 H 1.07996 * 119.53526 * 180.26731 * 17 16 15
32 32 H 1.08000 * 120.37843 * 179.72301 * 18 17 16
33 33 H 1.08004 * 120.81896 * 180.30330 * 19 18 17
34 34 H 0.97001 * 119.99834 * 341.44566 * 21 20 15
35 35 H 0.96998 * 119.99950 * 161.45292 * 21 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7465 0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0017
10 6 2.2453 -3.6620 -0.0015
11 6 1.4802 -4.9870 -0.0020
12 6 2.4745 -6.1500 -0.0024
13 16 1.5675 -7.7209 -0.0023
14 8 0.9522 -7.9125 1.2641
15 6 2.8562 -8.9226 -0.0020
16 7 3.2296 -9.4792 -1.1371
17 6 4.1924 -10.3787 -1.1860
18 6 4.8454 -10.7841 -0.0366
19 6 4.4860 -10.2252 1.1785
20 6 3.4686 -9.2736 1.1941
21 7 3.0708 -8.6808 2.3950
22 1 -0.4850 0.8400 0.0004
23 1 0.6247 -2.5562 -0.8919
24 1 0.6240 -2.5575 0.8880
25 1 2.8713 -3.6047 0.8890
26 1 2.8726 -3.6039 -0.8909
27 1 0.8540 -5.0447 -0.8922
28 1 0.8532 -5.0449 0.8877
29 1 3.1011 -6.0925 0.8878
30 1 3.1013 -6.0919 -0.8923
31 1 4.4720 -10.8081 -2.1367
32 1 5.6298 -11.5248 -0.0864
33 1 4.9824 -10.5196 2.0914
34 1 2.5723 -7.8488 2.3833
35 1 3.2932 -9.1012 3.2404
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385411004.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:45:57
Heat of formation + Delta-G solvation = -18.884648 kcal
Electronic energy + Delta-G solvation = -17392.771498 eV
Core-core repulsion = 14516.742784 eV
Total energy + Delta-G solvation = -2876.028714 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.24875 -36.27371 -35.15680 -34.91995 -32.63004 -32.30511 -29.48807 -29.21857
-25.33523 -24.19103 -23.08467 -21.96656 -20.12342 -18.41077 -17.79654 -17.19363
-16.60995 -16.18615 -15.53004 -15.09974 -14.85432 -14.57338 -14.41536 -13.97492
-13.46433 -13.25912 -12.74088 -12.64908 -12.12842 -11.81108 -11.74009 -11.40429
-11.00966 -10.80402 -10.63738 -10.49579 -10.44535 -9.97547 -9.77878 -9.66405
-9.25225 -9.02938 -8.32529 -8.31020 -8.03474 -5.97528 -3.99967 0.63932
1.19989 1.64246 2.66644 3.34408 3.38715 3.41197 3.42512 3.58735
3.86465 4.47625 4.53804 4.61420 4.79624 5.03161 5.13059 5.21477
5.26863 5.37976 5.56345 5.79145 5.85258 5.98756 6.19869 6.29852
6.42116 6.73328 6.89601 7.02992 7.14591 7.42605 7.70204 7.70801
7.85648 8.02913 8.45641 9.07095 9.63856 11.13755
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.036987 B = 0.003299 C = 0.003244
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 756.843203 B = 8486.228863 C = 8628.196531
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.056 3.944
3 Si 0.892 3.108
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.278 1.278
7 C -0.522 4.522
8 H 0.053 0.947
9 C 0.019 3.981
10 C -0.104 4.104
11 C -0.100 4.100
12 C -0.445 4.445
13 S 1.349 4.651
14 O -0.852 6.852
15 C -0.308 4.308
16 N -0.376 5.376
17 C 0.022 3.978
18 C -0.094 4.094
19 C -0.171 4.171
20 C 0.222 3.778
21 N -0.858 5.858
22 H 0.261 0.739
23 H 0.018 0.982
24 H 0.015 0.985
25 H 0.044 0.956
26 H 0.051 0.949
27 H 0.072 0.928
28 H 0.061 0.939
29 H 0.079 0.921
30 H 0.117 0.883
31 H 0.159 0.841
32 H 0.135 0.865
33 H 0.132 0.868
34 H 0.411 0.589
35 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.708 -22.608 -1.490 23.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.145 4.145
3 Si 0.720 3.280
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.204 1.204
7 C -0.560 4.560
8 H 0.072 0.928
9 C -0.019 4.019
10 C -0.143 4.143
11 C -0.139 4.139
12 C -0.584 4.584
13 S 1.546 4.454
14 O -0.846 6.846
15 C -0.544 4.544
16 N -0.085 5.085
17 C -0.142 4.142
18 C -0.114 4.114
19 C -0.203 4.203
20 C 0.109 3.891
21 N -0.400 5.400
22 H 0.071 0.929
23 H 0.037 0.963
24 H 0.033 0.967
25 H 0.063 0.937
26 H 0.069 0.931
27 H 0.091 0.909
28 H 0.080 0.920
29 H 0.098 0.902
30 H 0.136 0.864
31 H 0.176 0.824
32 H 0.153 0.847
33 H 0.150 0.850
34 H 0.246 0.754
35 H 0.228 0.772
Dipole moment (debyes) X Y Z Total
from point charges 6.109 -22.398 -2.218 23.322
hybrid contribution 2.573 0.829 2.982 4.025
sum 8.682 -21.569 0.764 23.263
Atomic orbital electron populations
1.69954 1.06026 1.26679 1.50835 1.25026 0.94853 0.99210 0.95382
0.86667 0.79591 0.83209 0.78577 1.20214 1.21271 1.20351 1.21236
0.92976 0.91201 1.50601 0.92842 1.19129 0.94074 0.91325 0.97326
1.21624 0.99015 0.93329 1.00345 1.21315 0.96727 0.93466 1.02375
1.27834 1.09668 1.13417 1.07468 1.69935 0.84383 0.82748 1.08293
1.92967 1.63824 1.82587 1.45255 1.29798 1.16202 1.17240 0.91146
1.67447 1.10164 1.04954 1.25960 1.22686 0.95436 0.97574 0.98499
1.22070 0.98668 0.97809 0.92887 1.21238 0.98643 1.00968 0.99401
1.18816 0.90660 0.91677 0.87955 1.42993 1.63156 1.29220 1.04656
0.92950 0.96327 0.96662 0.93715 0.93061 0.90915 0.92008 0.90231
0.86446 0.82361 0.84684 0.84977 0.75395 0.77217
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16
2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16
4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16
8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16
9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16
10 C -0.10 -2.14 5.15 -26.73 -0.14 -2.28 16
11 C -0.10 -1.64 5.22 -26.72 -0.14 -1.78 16
12 C -0.45 -5.95 5.88 37.16 0.22 -5.73 16
13 S 1.35 16.23 13.34 -107.50 -1.43 14.79 16
14 O -0.85 -13.69 14.82 -35.23 -0.52 -14.22 16
15 C -0.31 -3.87 6.52 -17.32 -0.11 -3.98 16
16 N -0.38 -4.39 10.29 -12.28 -0.13 -4.52 16
17 C 0.02 0.21 11.18 -17.53 -0.20 0.02 16
18 C -0.09 -0.80 10.10 -39.47 -0.40 -1.19 16
19 C -0.17 -1.70 10.07 -39.09 -0.39 -2.09 16
20 C 0.22 2.72 6.70 -83.63 -0.56 2.16 16
21 N -0.86 -10.18 8.29 32.49 0.27 -9.91 16
22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
25 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16
26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
29 H 0.08 1.12 8.02 -51.92 -0.42 0.70 16
30 H 0.12 1.40 8.14 -51.92 -0.42 0.98 16
31 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16
32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16
33 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16
34 H 0.41 5.52 6.03 -40.82 -0.25 5.27 16
35 H 0.40 3.68 8.90 -40.82 -0.36 3.32 16
LS Contribution 311.41 15.07 4.69 4.69
Total: -1.00 -35.33 311.41 -8.47 -43.79
By element:
Atomic # 1 Polarization: 8.08 SS G_CDS: -4.79 Total: 3.29 kcal
Atomic # 6 Polarization: -26.04 SS G_CDS: -2.27 Total: -28.31 kcal
Atomic # 7 Polarization: -41.77 SS G_CDS: 0.88 Total: -40.89 kcal
Atomic # 8 Polarization: -13.69 SS G_CDS: -0.52 Total: -14.22 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal
Atomic # 16 Polarization: 16.23 SS G_CDS: -1.43 Total: 14.79 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -35.33 -8.47 -43.79 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385411004.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.910 kcal
(2) G-P(sol) polarization free energy of solvation -35.326 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.416 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds