Wall clock time and date at job start Mon Mar 30 2020 04:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47251 * 270.00263 * 3 2 1 5 5 H 1.48507 * 109.47241 * 30.00242 * 3 2 1 6 6 H 1.48500 * 109.47125 * 150.00064 * 3 2 1 7 7 C 1.38808 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00192 * 197.00583 * 7 2 1 9 9 N 1.36939 * 120.00110 * 17.00708 * 7 2 1 10 10 C 1.47075 * 120.87968 * 26.57280 * 9 7 2 11 11 C 1.53237 * 108.51957 * 128.84412 * 10 9 7 12 12 N 1.46901 * 109.34142 * 53.82697 * 11 10 9 13 13 C 1.39077 * 110.99684 * 172.74942 * 12 11 10 14 14 C 1.39286 * 120.07250 * 179.72171 * 13 12 11 15 15 N 1.31966 * 119.90448 * 179.73509 * 14 13 12 16 16 C 1.32345 * 120.07205 * 0.56319 * 15 14 13 17 17 Cl 1.73595 * 119.91999 * 179.71217 * 16 15 14 18 18 C 1.38316 * 120.15604 * 359.68906 * 16 15 14 19 19 N 1.32222 * 120.09433 * 0.02562 * 18 16 15 20 20 C 1.46900 * 111.27020 * 296.89355 * 12 11 10 21 21 C 1.47076 * 120.88019 * 206.60099 * 9 7 2 22 22 H 0.96998 * 119.99784 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.63306 * 9.12884 * 10 9 7 24 24 H 1.09008 * 109.62720 * 248.54733 * 10 9 7 25 25 H 1.09001 * 109.49657 * 173.79111 * 11 10 9 26 26 H 1.09009 * 109.49363 * 293.84256 * 11 10 9 27 27 H 1.07993 * 120.04245 * 0.02562 * 14 13 12 28 28 H 1.08000 * 119.95167 * 179.97438 * 18 16 15 29 29 H 1.08991 * 109.49304 * 183.06118 * 20 12 11 30 30 H 1.08998 * 109.49611 * 303.14707 * 20 12 11 31 31 H 1.09000 * 109.63217 * 111.44915 * 21 9 7 32 32 H 1.09003 * 109.63063 * 350.86736 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0549 -1.2227 0.2730 9 7 1.3705 -2.3620 -0.3479 10 6 0.2046 -2.3416 -1.2442 11 6 0.4399 -3.3520 -2.3719 12 7 0.7545 -4.6644 -1.7916 13 6 0.8146 -5.6437 -2.7773 14 6 1.1069 -6.9617 -2.4347 15 7 1.1580 -7.8893 -3.3721 16 6 0.9427 -7.5661 -4.6373 17 17 1.0182 -8.7881 -5.8679 18 6 0.6573 -6.2572 -4.9812 19 7 0.5990 -5.3237 -4.0465 20 6 2.0021 -4.6195 -1.0175 21 6 1.8307 -3.6609 0.1658 22 1 -0.4850 0.8400 0.0004 23 1 0.0841 -1.3438 -1.6658 24 1 -0.6907 -2.6172 -0.6867 25 1 -0.4591 -3.4307 -2.9833 26 1 1.2728 -3.0186 -2.9912 27 1 1.2870 -7.2250 -1.4030 28 1 0.4826 -5.9970 -6.0147 29 1 2.2360 -5.6172 -0.6464 30 1 2.8135 -4.2686 -1.6552 31 1 1.0919 -4.0633 0.8589 32 1 2.7855 -3.5353 0.6765 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396738037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:36 Heat of formation + Delta-G solvation = 67.546403 kcal Electronic energy + Delta-G solvation = -18064.184430 eV Core-core repulsion = 15086.319598 eV Total energy + Delta-G solvation = -2977.864832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.43716 -39.76083 -37.79428 -36.48711 -35.23285 -33.43507 -31.98928 -31.12789 -28.32442 -26.29699 -25.50334 -23.98885 -23.78298 -21.08059 -19.24617 -18.80968 -18.41215 -17.85640 -16.78872 -16.51670 -15.90339 -15.62262 -15.33839 -15.28561 -15.20213 -14.54147 -14.37929 -13.40218 -13.15399 -13.08907 -12.81103 -12.63297 -12.49042 -12.41796 -12.23911 -12.15366 -12.03970 -11.77491 -11.60851 -11.04252 -10.57826 -10.31437 -9.26472 -8.75544 -7.89842 -5.34650 -0.44693 -0.09218 0.64763 1.48077 1.49897 1.58130 2.22083 2.50783 2.52545 3.10895 3.26175 3.27769 3.32700 3.60271 3.89334 4.09955 4.19666 4.34915 4.46319 4.49214 4.58453 4.74996 4.82993 4.89751 5.11439 5.29800 5.55873 5.59902 5.64909 5.85665 6.13389 6.34598 6.57005 7.10487 7.79894 8.33072 9.17752 Molecular weight = 268.08amu Principal moments of inertia in cm(-1) A = 0.048183 B = 0.004041 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.984214 B = 6928.044127 C = 7147.844363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.615 5.615 10 C 0.184 3.816 11 C 0.067 3.933 12 N -0.466 5.466 13 C 0.267 3.733 14 C 0.060 3.940 15 N -0.425 5.425 16 C 0.071 3.929 17 Cl -0.008 7.008 18 C 0.110 3.890 19 N -0.488 5.488 20 C 0.055 3.945 21 C 0.143 3.857 22 H 0.251 0.749 23 H 0.063 0.937 24 H 0.004 0.996 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.203 0.797 28 H 0.204 0.796 29 H 0.118 0.882 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 -14.915 -8.999 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.339 5.339 10 C 0.057 3.943 11 C -0.062 4.062 12 N -0.183 5.183 13 C 0.031 3.969 14 C -0.105 4.105 15 N -0.141 5.141 16 C -0.095 4.095 17 Cl 0.020 6.980 18 C -0.052 4.052 19 N -0.208 5.208 20 C -0.071 4.071 21 C 0.017 3.983 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.022 0.978 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.219 0.781 28 H 0.221 0.779 29 H 0.136 0.864 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.495 -14.942 -8.699 17.469 hybrid contribution 0.432 1.202 -0.456 1.356 sum 2.927 -13.740 -9.155 16.768 Atomic orbital electron populations 1.70170 1.06658 1.25959 1.55285 1.25774 0.96023 1.01485 1.01115 0.85272 0.78167 0.79556 0.77473 1.21375 1.22261 1.19161 1.19552 0.93069 0.85780 1.41089 0.90948 1.44423 1.34065 1.02444 1.52939 1.20680 0.88229 0.96396 0.88952 1.22486 1.00517 0.86515 0.96653 1.59020 1.32993 1.06190 1.20069 1.21339 0.92970 0.93826 0.88740 1.23510 0.99787 0.86588 1.00659 1.67752 1.09774 1.36274 1.00254 1.22717 1.05256 0.90890 0.90672 1.98402 1.96592 1.54693 1.48349 1.23836 0.93427 0.86726 1.01172 1.68613 1.15769 1.35824 1.00590 1.22869 0.86444 1.02330 0.95493 1.21194 0.98861 0.84938 0.93319 0.94017 0.91868 0.97790 0.90234 0.94592 0.78069 0.77900 0.86440 0.94131 0.95256 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 11.15 21.65 0.24 -54.11 16 2 C -0.05 -2.64 4.94 84.86 0.42 -2.22 16 3 Si 0.97 43.90 29.59 68.60 2.03 45.93 16 4 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.27 -14.10 9.63 84.03 0.81 -13.29 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 9 N -0.61 -29.83 3.04 -698.14 -2.12 -31.95 16 10 C 0.18 8.79 5.42 86.35 0.47 9.26 16 11 C 0.07 2.58 4.83 86.38 0.42 3.00 16 12 N -0.47 -15.41 4.66 -700.47 -3.26 -18.68 16 13 C 0.27 7.75 6.41 133.00 0.85 8.60 16 14 C 0.06 1.47 10.33 84.92 0.88 2.35 16 15 N -0.42 -10.66 10.47 -185.58 -1.94 -12.60 16 16 C 0.07 1.64 7.28 84.63 0.62 2.25 16 17 Cl -0.01 -0.16 29.12 -2.72 -0.08 -0.24 16 18 C 0.11 2.51 11.00 84.65 0.93 3.44 16 19 N -0.49 -14.15 8.85 -192.51 -1.70 -15.86 16 20 C 0.05 1.66 5.42 86.38 0.47 2.13 16 21 C 0.14 5.38 6.69 86.35 0.58 5.96 16 22 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 23 H 0.06 3.42 6.12 -2.39 -0.01 3.40 16 24 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 25 H 0.08 2.99 7.66 -2.39 -0.02 2.97 16 26 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.20 3.76 7.13 -2.91 -0.02 3.74 16 28 H 0.20 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.12 2.56 6.63 -2.39 -0.02 2.55 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 2.70 7.95 -2.39 -0.02 2.68 16 Total: -1.00 -63.00 282.45 0.73 -62.27 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.14 Total: 3.75 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 6.43 Total: 21.49 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -8.79 Total: -133.20 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -63.00 0.73 -62.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396738037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.816 kcal (2) G-P(sol) polarization free energy of solvation -63.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds