Wall clock time and date at job start Mon Mar 30 2020 05:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 S 1.75884 * 125.20030 * 2 1 4 4 C 1.75882 * 90.96776 * 180.02562 * 3 2 1 5 5 C 1.33387 * 109.59439 * 0.02562 * 4 3 2 6 6 C 1.50703 * 122.53794 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47107 * 260.02397 * 6 5 4 8 8 C 1.46904 * 111.00029 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46800 * 180.02562 * 8 7 6 10 10 O 1.21289 * 120.00338 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99855 * 180.02562 * 9 8 7 12 12 C 1.37091 * 120.00193 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00238 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00205 * 180.02562 * 12 11 9 15 15 N 1.31415 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00181 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47138 * 89.99534 * 16 14 12 18 18 H 1.48502 * 109.46886 * 209.99398 * 16 14 12 19 19 H 1.48495 * 109.47039 * 329.99454 * 16 14 12 20 20 C 1.33385 * 125.20311 * 180.31334 * 2 1 3 21 21 C 1.50698 * 122.54398 * 359.97027 * 20 2 1 22 22 H 1.08998 * 109.46947 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47218 * 120.02502 * 1 2 3 24 24 H 1.09002 * 109.46908 * 240.02150 * 1 2 3 25 25 H 1.08002 * 125.19923 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.47152 * 140.02485 * 6 5 4 27 27 H 1.09001 * 109.46980 * 20.02585 * 6 5 4 28 28 H 1.00908 * 110.99847 * 56.05051 * 7 6 5 29 29 H 1.08995 * 109.47167 * 300.00240 * 8 7 6 30 30 H 1.09003 * 109.46442 * 60.00214 * 8 7 6 31 31 H 0.97000 * 119.99567 * 0.02562 * 11 9 8 32 32 H 0.96998 * 120.00315 * 179.97438 * 15 14 12 33 33 H 1.09005 * 109.47179 * 270.26246 * 21 20 2 34 34 H 1.09000 * 109.46764 * 30.25359 * 21 20 2 35 35 H 1.08996 * 109.47784 * 150.25431 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9751 0.4478 -0.0008 5 6 3.6380 -0.8428 -0.0016 6 6 4.6624 -1.9481 -0.0018 7 7 4.8197 -2.4696 -1.3661 8 6 5.8134 -3.5509 -1.4050 9 6 5.9476 -4.0590 -2.8174 10 8 5.2815 -3.5684 -3.7043 11 7 6.8080 -5.0587 -3.0950 12 6 6.9305 -5.5206 -4.3799 13 1 6.3374 -5.0838 -5.1697 14 6 7.8171 -6.5516 -4.6660 15 7 8.5385 -7.0835 -3.7049 16 14 7.9835 -7.1815 -6.4167 17 1 9.0395 -6.4113 -7.1216 18 1 8.3528 -8.6197 -6.3922 19 1 6.6907 -7.0143 -7.1279 20 6 2.2760 -1.0899 -0.0060 21 6 1.7053 -2.4846 -0.0129 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3634 -0.5142 -0.8898 24 1 -0.3633 -0.5135 0.8902 25 1 4.9863 0.8272 -0.0015 26 1 4.3316 -2.7503 0.6579 27 1 5.6174 -1.5584 0.3506 28 1 5.0636 -1.7315 -2.0095 29 1 6.7763 -3.1720 -1.0625 30 1 5.4909 -4.3642 -0.7549 31 1 7.3404 -5.4513 -2.3855 32 1 9.1571 -7.8035 -3.9045 33 1 1.5638 -2.8244 1.0131 34 1 0.7460 -2.4820 -0.5303 35 1 2.3932 -3.1562 -0.5265 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399796418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:29 Heat of formation + Delta-G solvation = -35.310976 kcal Electronic energy + Delta-G solvation = -17483.444576 eV Core-core repulsion = 14606.703563 eV Total energy + Delta-G solvation = -2876.741013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30262 -39.74102 -36.51773 -35.75481 -33.35779 -33.11329 -30.37318 -29.31935 -27.05224 -25.90274 -24.75273 -21.98202 -21.08889 -19.91908 -18.99774 -18.39799 -17.60602 -16.78265 -16.43392 -16.11833 -15.76256 -15.50191 -15.19090 -14.74632 -14.48828 -14.17259 -13.67245 -13.58123 -13.51924 -13.43708 -13.11604 -12.90777 -12.75393 -12.55596 -12.43050 -12.41357 -12.14410 -12.10601 -11.58023 -11.50464 -10.35234 -10.01087 -9.44522 -9.27613 -9.12101 -8.46367 -5.95064 0.09549 0.77488 1.07474 1.38248 1.42008 1.54825 1.69072 2.06084 2.30260 3.05584 3.21026 3.60574 3.87759 4.03552 4.31314 4.32683 4.40603 4.46706 4.53911 4.58493 4.65525 4.71956 4.74262 4.80309 4.91523 5.11684 5.20213 5.30247 5.41231 5.62558 5.72543 5.88841 6.10396 6.36112 6.60896 7.13183 7.56906 8.12593 8.71058 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.040020 B = 0.003270 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.488806 B = 8559.655077 C = 8671.278881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.196 4.196 3 S 0.092 5.908 4 C -0.218 4.218 5 C -0.100 4.100 6 C 0.122 3.878 7 N -0.674 5.674 8 C 0.066 3.934 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.573 5.573 12 C -0.334 4.334 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.992 3.008 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.273 1.273 20 C -0.105 4.105 21 C -0.093 4.093 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.175 0.825 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.342 0.658 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.397 0.603 32 H 0.278 0.722 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 12.468 12.615 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.313 4.313 3 S 0.358 5.642 4 C -0.354 4.354 5 C -0.113 4.113 6 C -0.009 4.009 7 N -0.306 5.306 8 C -0.067 4.067 9 C 0.225 3.775 10 O -0.510 6.510 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.816 3.184 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.198 1.198 20 C -0.116 4.116 21 C -0.152 4.152 22 H 0.093 0.907 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.192 0.808 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.160 0.840 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.468 13.812 12.087 21.643 hybrid contribution 1.779 -1.511 -0.513 2.390 sum -9.689 12.301 11.574 19.472 Atomic orbital electron populations 1.20362 0.86295 1.03380 1.03531 1.24598 1.01053 0.94919 1.10747 1.83974 0.96642 1.09526 1.74047 1.25636 1.02806 0.96172 1.10831 1.18796 0.94596 0.94157 1.03751 1.20619 0.95639 0.94806 0.89814 1.60082 1.49389 1.13577 1.07547 1.21549 0.95585 0.96438 0.93105 1.20887 0.82297 0.82556 0.91712 1.90497 1.48991 1.61566 1.49996 1.41920 1.37177 1.32137 1.09772 1.19662 1.22907 1.17114 0.86718 0.90434 1.26029 0.95306 0.96309 1.03564 1.69669 1.25803 1.26636 1.34010 0.84937 0.78572 0.77714 0.77176 1.19622 1.19476 1.19828 1.18849 0.92407 0.97061 1.03304 1.20514 1.00867 0.91440 1.02343 0.90684 0.90406 0.89483 0.80752 0.89225 0.93133 0.84019 0.91407 0.87472 0.76917 0.91281 0.90349 0.91357 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.46 71.24 0.67 -0.55 16 2 C -0.20 -4.30 6.51 24.59 0.16 -4.14 16 3 S 0.09 1.91 23.33 -56.49 -1.32 0.59 16 4 C -0.22 -4.90 10.95 66.72 0.73 -4.17 16 5 C -0.10 -2.49 5.31 -20.92 -0.11 -2.60 16 6 C 0.12 3.00 5.13 85.56 0.44 3.44 16 7 N -0.67 -21.77 5.84 -521.98 -3.05 -24.82 16 8 C 0.07 2.24 6.17 85.55 0.53 2.76 16 9 C 0.44 21.03 7.82 87.65 0.69 21.72 16 10 O -0.62 -35.23 15.78 -3.06 -0.05 -35.28 16 11 N -0.57 -29.57 5.29 -306.99 -1.62 -31.19 16 12 C -0.33 -19.18 9.68 84.04 0.81 -18.36 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 15 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 16 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 C -0.10 -2.57 5.80 -20.92 -0.12 -2.69 16 21 C -0.09 -2.11 9.33 71.24 0.66 -1.45 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.08 1.22 7.92 -2.39 -0.02 1.20 16 24 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 26 H 0.09 2.04 7.70 -2.39 -0.02 2.03 16 27 H 0.05 1.09 8.07 -2.39 -0.02 1.07 16 28 H 0.34 12.01 8.42 -89.69 -0.76 11.25 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 32 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 33 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 34 H 0.07 1.42 7.34 -2.39 -0.02 1.41 16 35 H 0.06 1.75 7.11 -2.39 -0.02 1.74 16 Total: -1.00 -67.12 314.50 0.83 -66.28 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.37 Total: 34.96 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.93 Total: -6.25 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.39 Total: -105.51 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.05 Total: -35.28 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.32 Total: 0.59 kcal Total: -67.12 0.83 -66.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399796418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.974 kcal (2) G-P(sol) polarization free energy of solvation -67.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds