Wall clock time and date at job start Mon Mar 30 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.53001 * 109.47384 * 294.30302 * 13 12 11 15 15 C 1.52997 * 109.47077 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.47186 * 300.00001 * 15 14 13 17 17 F 1.39903 * 109.47312 * 60.00043 * 15 14 13 18 18 Cl 1.80299 * 109.47083 * 179.97438 * 15 14 13 19 19 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 20 20 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 21 21 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 23 23 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 24 24 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 25 25 H 1.08995 * 109.42457 * 173.94854 * 11 10 9 26 26 H 1.09000 * 109.47430 * 54.30450 * 13 12 11 27 27 H 1.09005 * 109.47063 * 174.30016 * 13 12 11 28 28 H 1.09000 * 109.46958 * 300.00437 * 14 13 12 29 29 H 1.09000 * 109.46653 * 60.00226 * 14 13 12 30 30 H 1.09001 * 109.49186 * 303.14219 * 19 12 11 31 31 H 1.09000 * 109.51153 * 183.07955 * 19 12 11 32 32 H 1.09004 * 109.62440 * 350.90141 * 20 9 7 33 33 H 1.09004 * 109.62726 * 111.47314 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.5442 -5.8733 -3.4874 15 6 -0.4702 -6.9462 -4.5756 16 9 0.4386 -6.5481 -5.5620 17 9 -0.0466 -8.1543 -4.0114 18 17 -2.1004 -7.1671 -5.3135 19 6 2.0102 -4.6146 -1.0325 20 6 1.8303 -3.6617 0.1539 21 1 -0.4851 0.8399 0.0004 22 1 -0.6867 -2.6167 -0.7035 23 1 0.0888 -1.3354 -1.6717 24 1 1.2942 -3.0054 -3.0036 25 1 -0.4378 -3.4179 -3.0099 26 1 1.5470 -5.3757 -3.6292 27 1 1.1693 -6.6276 -2.4216 28 1 -1.2521 -6.1838 -2.7190 29 1 -0.8743 -4.9319 -3.9266 30 1 2.8259 -4.2606 -1.6630 31 1 2.2425 -5.6140 -0.6644 32 1 2.7815 -3.5379 0.6717 33 1 1.0868 -4.0673 0.8400 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402916704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:23 Heat of formation + Delta-G solvation = -75.865224 kcal Electronic energy + Delta-G solvation = -18919.665532 eV Core-core repulsion = 15484.892719 eV Total energy + Delta-G solvation = -3434.772813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.47288 -47.65625 -38.33876 -36.73138 -34.98813 -32.50276 -30.69972 -29.97253 -27.03591 -24.69533 -23.04329 -22.54830 -21.23709 -19.19309 -18.16182 -18.05431 -17.05120 -16.66830 -15.18491 -15.00515 -14.47671 -14.34521 -14.07694 -13.96149 -13.67559 -13.52356 -13.38537 -13.05778 -12.58513 -12.13790 -11.98587 -11.77332 -11.55592 -11.30962 -11.17740 -11.03632 -10.77810 -10.46164 -10.34635 -10.09290 -9.78756 -9.65200 -8.53906 -7.97131 -6.70972 -5.81098 -3.22258 0.82417 3.27828 3.36229 3.43567 3.44825 3.64664 3.95511 4.44146 4.49738 4.79616 4.95462 5.34048 5.36454 5.39822 5.63619 5.75735 5.84927 5.91117 6.07558 6.14727 6.26941 6.47249 6.61949 6.88225 7.18398 7.44303 7.56431 7.63928 7.78222 8.40344 9.18228 9.81464 10.39671 11.27805 Molecular weight = 268.08amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.004178 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.207596 B = 6699.929584 C = 7017.867942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.029 3.971 12 N -0.529 5.529 13 C 0.051 3.949 14 C -0.150 4.150 15 C 0.359 3.641 16 F -0.169 7.169 17 F -0.168 7.168 18 Cl -0.140 7.140 19 C 0.045 3.955 20 C 0.148 3.852 21 H 0.254 0.746 22 H 0.028 0.972 23 H 0.090 0.910 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -13.542 -8.852 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.100 4.100 12 N -0.254 5.254 13 C -0.078 4.078 14 C -0.189 4.189 15 C 0.297 3.703 16 F -0.150 7.150 17 F -0.149 7.149 18 Cl -0.115 7.115 19 C -0.084 4.084 20 C 0.022 3.978 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.108 0.892 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.055 -13.535 -8.564 16.148 hybrid contribution 1.072 0.855 -0.809 1.591 sum -0.984 -12.680 -9.373 15.799 Atomic orbital electron populations 1.70023 1.05215 1.25522 1.54033 1.25014 0.95299 0.98365 1.00956 0.86273 0.79168 0.83743 0.77589 1.21508 1.21724 1.20408 1.19219 0.92738 0.84862 1.41454 0.91569 1.44147 1.34439 1.01220 1.52083 1.20966 0.89034 0.96624 0.88181 1.23111 0.98792 0.89217 0.98912 1.61947 1.35222 1.05792 1.22419 1.22049 0.93344 0.97752 0.94665 1.22885 1.02538 0.97303 0.96134 1.24047 0.78972 0.83112 0.84169 1.93132 1.67132 1.90512 1.64215 1.93127 1.89509 1.47778 1.84527 1.98857 1.29261 1.97725 1.85655 1.22642 0.89279 0.99676 0.96814 1.20983 0.97940 0.86432 0.92472 0.93582 0.95396 0.89230 0.95347 0.91994 0.94292 0.90249 0.86396 0.87092 0.95186 0.91821 0.92453 0.95537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 11.16 55.49 0.62 -25.30 16 2 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 3 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.90 9.63 -15.06 -0.15 -7.04 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -14.84 3.03 -171.74 -0.52 -15.36 16 10 C 0.18 4.18 5.45 -3.36 -0.02 4.16 16 11 C 0.03 0.53 5.48 -3.46 -0.02 0.51 16 12 N -0.53 -8.88 4.63 -234.02 -1.08 -9.96 16 13 C 0.05 0.68 4.72 -3.82 -0.02 0.66 16 14 C -0.15 -1.70 4.86 -26.73 -0.13 -1.83 16 15 C 0.36 3.98 2.53 37.16 0.09 4.07 16 16 F -0.17 -2.03 16.66 2.25 0.04 -2.00 16 17 F -0.17 -1.95 16.66 2.25 0.04 -1.91 16 18 Cl -0.14 -1.49 28.87 -51.86 -1.50 -2.99 16 19 C 0.05 0.78 5.62 -3.70 -0.02 0.76 16 20 C 0.15 3.08 6.69 -3.61 -0.02 3.06 16 21 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.09 2.34 6.11 -51.93 -0.32 2.02 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.00 6.16 -51.93 -0.32 0.68 16 26 H 0.04 0.53 7.79 -51.93 -0.40 0.13 16 27 H 0.08 0.98 7.63 -51.93 -0.40 0.59 16 28 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.11 1.24 6.40 -51.93 -0.33 0.91 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 32 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 288.74 15.07 4.35 4.35 Total: -1.00 -28.63 288.74 -7.71 -36.34 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -4.26 Total: -3.96 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.37 Total: 4.33 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.98 Total: -50.62 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.08 Total: -3.91 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -1.50 Total: -2.99 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.63 -7.71 -36.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402916704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.520 kcal (2) G-P(sol) polarization free energy of solvation -28.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds