Wall clock time and date at job start Mon Mar 30 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.53001 * 109.47384 * 294.30302 * 13 12 11 15 15 C 1.52997 * 109.47077 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.47186 * 300.00001 * 15 14 13 17 17 F 1.39903 * 109.47312 * 60.00043 * 15 14 13 18 18 Cl 1.80299 * 109.47083 * 179.97438 * 15 14 13 19 19 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 20 20 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 21 21 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 23 23 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 24 24 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 25 25 H 1.08995 * 109.42457 * 173.94854 * 11 10 9 26 26 H 1.09000 * 109.47430 * 54.30450 * 13 12 11 27 27 H 1.09005 * 109.47063 * 174.30016 * 13 12 11 28 28 H 1.09000 * 109.46958 * 300.00437 * 14 13 12 29 29 H 1.09000 * 109.46653 * 60.00226 * 14 13 12 30 30 H 1.09001 * 109.49186 * 303.14219 * 19 12 11 31 31 H 1.09000 * 109.51153 * 183.07955 * 19 12 11 32 32 H 1.09004 * 109.62440 * 350.90141 * 20 9 7 33 33 H 1.09004 * 109.62726 * 111.47314 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.5442 -5.8733 -3.4874 15 6 -0.4702 -6.9462 -4.5756 16 9 0.4386 -6.5481 -5.5620 17 9 -0.0466 -8.1543 -4.0114 18 17 -2.1004 -7.1671 -5.3135 19 6 2.0102 -4.6146 -1.0325 20 6 1.8303 -3.6617 0.1539 21 1 -0.4851 0.8399 0.0004 22 1 -0.6867 -2.6167 -0.7035 23 1 0.0888 -1.3354 -1.6717 24 1 1.2942 -3.0054 -3.0036 25 1 -0.4378 -3.4179 -3.0099 26 1 1.5470 -5.3757 -3.6292 27 1 1.1693 -6.6276 -2.4216 28 1 -1.2521 -6.1838 -2.7190 29 1 -0.8743 -4.9319 -3.9266 30 1 2.8259 -4.2606 -1.6630 31 1 2.2425 -5.6140 -0.6644 32 1 2.7815 -3.5379 0.6717 33 1 1.0868 -4.0673 0.8400 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402916704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:23 Heat of formation + Delta-G solvation = -93.351027 kcal Electronic energy + Delta-G solvation = -18920.423774 eV Core-core repulsion = 15484.892719 eV Total energy + Delta-G solvation = -3435.531055 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.36579 -48.55050 -39.80682 -37.60516 -36.59892 -34.04146 -32.29745 -31.62337 -28.60834 -26.15253 -24.54624 -24.17281 -22.38510 -20.86084 -19.07575 -19.05045 -18.60846 -17.89394 -16.90573 -16.24847 -16.06471 -15.53261 -15.31446 -15.27655 -15.00994 -14.86896 -14.84914 -14.41209 -14.05431 -13.28288 -13.10603 -12.96519 -12.95734 -12.65617 -12.62214 -12.52211 -12.21517 -12.11362 -11.99242 -11.85301 -11.55712 -11.36674 -10.58512 -9.35505 -8.68797 -7.87783 -5.31962 -0.04004 1.47138 1.48481 1.57626 2.35719 2.51096 2.65780 3.07596 3.23529 3.29533 3.68613 3.78285 3.99020 4.27227 4.33899 4.40841 4.52615 4.61847 4.70082 4.75952 4.82076 4.95083 5.02271 5.20662 5.38048 5.61883 5.69566 6.10850 6.14997 6.37687 7.13855 7.84519 8.38045 9.19026 Molecular weight = 268.08amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.004178 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.207596 B = 6699.929584 C = 7017.867942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.615 5.615 10 C 0.184 3.816 11 C 0.045 3.955 12 N -0.535 5.535 13 C 0.054 3.946 14 C -0.146 4.146 15 C 0.364 3.636 16 F -0.174 7.174 17 F -0.170 7.170 18 Cl -0.134 7.134 19 C 0.055 3.945 20 C 0.143 3.857 21 H 0.251 0.749 22 H 0.003 0.997 23 H 0.057 0.943 24 H 0.020 0.980 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.025 0.975 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -14.751 -9.614 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.340 5.340 10 C 0.058 3.942 11 C -0.084 4.084 12 N -0.260 5.260 13 C -0.074 4.074 14 C -0.184 4.184 15 C 0.302 3.698 16 F -0.155 7.155 17 F -0.151 7.151 18 Cl -0.108 7.108 19 C -0.074 4.074 20 C 0.018 3.982 21 H 0.060 0.940 22 H 0.021 0.979 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.145 0.855 29 H 0.132 0.868 30 H 0.043 0.957 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -1.447 -14.782 -9.334 17.542 hybrid contribution 0.870 1.156 -0.542 1.545 sum -0.577 -13.626 -9.875 16.838 Atomic orbital electron populations 1.70174 1.06596 1.25885 1.55432 1.25749 0.96041 1.01365 1.01266 0.85268 0.78216 0.79674 0.77380 1.21291 1.22115 1.19338 1.19547 0.93013 0.86135 1.40842 0.91532 1.44441 1.34589 1.02098 1.52831 1.20741 0.87923 0.96440 0.89128 1.22781 0.99709 0.89107 0.96805 1.61864 1.35086 1.05386 1.23680 1.22072 0.94599 0.96945 0.93782 1.22831 1.01584 0.97638 0.96383 1.23929 0.79065 0.82892 0.83941 1.93127 1.67401 1.90561 1.64443 1.93128 1.89562 1.47855 1.84537 1.98862 1.28732 1.97694 1.85543 1.22492 0.89304 1.00281 0.95350 1.21139 0.97606 0.85455 0.94047 0.94022 0.97924 0.92469 0.96144 0.89419 0.94212 0.88677 0.85542 0.86838 0.95663 0.88424 0.92097 0.96326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 11.16 21.65 0.24 -54.75 16 2 C -0.05 -2.71 4.93 84.86 0.42 -2.29 16 3 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.27 -14.59 9.63 84.03 0.81 -13.78 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 9 N -0.62 -30.95 3.03 -697.26 -2.11 -33.06 16 10 C 0.18 8.78 5.45 86.50 0.47 9.25 16 11 C 0.05 1.63 5.48 86.54 0.47 2.10 16 12 N -0.54 -16.82 4.63 -894.31 -4.14 -20.96 16 13 C 0.05 1.28 4.72 86.30 0.41 1.69 16 14 C -0.15 -2.91 4.86 30.59 0.15 -2.77 16 15 C 0.36 7.15 2.53 71.98 0.18 7.33 16 16 F -0.17 -3.79 16.66 44.97 0.75 -3.04 16 17 F -0.17 -3.47 16.66 44.97 0.75 -2.72 16 18 Cl -0.13 -2.55 28.87 -2.72 -0.08 -2.63 16 19 C 0.05 1.77 5.62 86.38 0.49 2.26 16 20 C 0.14 5.86 6.69 86.35 0.58 6.44 16 21 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 22 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 23 H 0.06 3.08 6.11 -2.39 -0.01 3.07 16 24 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.09 2.69 6.16 -2.39 -0.01 2.68 16 26 H 0.04 0.97 7.79 -2.39 -0.02 0.95 16 27 H 0.09 2.00 7.63 -2.38 -0.02 1.98 16 28 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.11 2.24 6.40 -2.39 -0.02 2.22 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 32 H 0.06 2.39 7.95 -2.38 -0.02 2.37 16 33 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -61.59 288.74 2.52 -59.07 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: 1.11 Total: 1.25 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 3.97 Total: 10.23 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -6.01 Total: -108.77 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 1.50 Total: -5.76 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.08 Total: -2.63 kcal Total: -61.59 2.52 -59.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402916704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.281 kcal (2) G-P(sol) polarization free energy of solvation -61.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds