Wall clock time and date at job start Mon Mar 30 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 110.01802 * 331.56932 * 3 2 1 5 5 N 1.46497 * 109.46992 * 59.29773 * 4 3 2 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 S 1.80997 * 109.47151 * 180.27780 * 8 6 5 10 10 C 1.76196 * 100.00314 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00626 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00336 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99494 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47141 * 90.00156 * 14 12 10 16 16 H 1.48505 * 109.47177 * 209.99950 * 14 12 10 17 17 H 1.48496 * 109.47259 * 329.99923 * 14 12 10 18 18 C 1.54268 * 110.03064 * 92.96298 * 3 2 1 19 19 C 1.54959 * 104.16421 * 95.75188 * 18 3 2 20 20 C 1.54892 * 102.77571 * 37.88806 * 19 18 3 21 21 C 1.53880 * 110.03024 * 210.17412 * 3 2 1 22 22 H 1.08995 * 109.46838 * 299.29661 * 4 3 2 23 23 H 1.09001 * 109.46617 * 179.29996 * 4 3 2 24 24 H 0.97000 * 120.00580 * 0.02562 * 5 4 3 25 25 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 26 26 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 27 27 H 0.97003 * 119.99714 * 180.02562 * 13 12 10 28 28 H 1.09005 * 110.48488 * 214.39953 * 18 3 2 29 29 H 1.09000 * 110.48497 * 337.04049 * 18 3 2 30 30 H 1.08997 * 110.72101 * 279.57608 * 19 18 3 31 31 H 1.08997 * 110.76671 * 156.21861 * 19 18 3 32 32 H 1.09000 * 110.48374 * 203.40728 * 20 19 18 33 33 H 1.09000 * 110.48626 * 80.76554 * 20 19 18 34 34 H 1.08997 * 110.03181 * 359.95497 * 21 3 2 35 35 H 1.08999 * 110.02916 * 121.39020 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1323 -1.2633 0.6844 5 7 2.6374 -2.4447 -0.0266 6 6 2.9738 -3.6780 0.4002 7 8 3.6859 -3.8099 1.3731 8 6 2.4597 -4.8934 -0.3275 9 16 3.0751 -6.3887 0.4857 10 6 2.3421 -7.6190 -0.5407 11 1 1.7261 -7.3267 -1.3783 12 6 2.5570 -8.9640 -0.2735 13 7 2.0097 -9.8831 -1.0406 14 14 3.6229 -9.4698 1.1748 15 1 2.7751 -9.6203 2.3846 16 1 4.2879 -10.7627 0.8724 17 1 4.6531 -8.4285 1.4187 18 6 3.1363 0.0758 -1.4474 19 6 3.4070 1.5846 -1.6744 20 6 3.9655 2.0423 -0.3041 21 6 3.1345 1.2507 0.7267 22 1 2.7842 -1.2883 1.7170 23 1 4.2222 -1.2596 0.6684 24 1 2.0681 -2.3393 -0.8049 25 1 1.3697 -4.8931 -0.3106 26 1 2.8070 -4.8725 -1.3605 27 1 2.1596 -10.8230 -0.8536 28 1 4.0588 -0.4963 -1.5470 29 1 2.3839 -0.2871 -2.1475 30 1 2.4822 2.1111 -1.9100 31 1 4.1470 1.7304 -2.4613 32 1 3.8180 3.1141 -0.1708 33 1 5.0220 1.7882 -0.2186 34 1 2.3000 1.8572 1.0786 35 1 3.7636 0.9569 1.5669 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593779615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:28 Heat of formation + Delta-G solvation = -52.408847 kcal Electronic energy + Delta-G solvation = -17500.561887 eV Core-core repulsion = 14623.079454 eV Total energy + Delta-G solvation = -2877.482432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14674 -39.82044 -36.94046 -35.59343 -34.67678 -32.09143 -30.25227 -29.68589 -27.87360 -25.68606 -22.84274 -22.12901 -21.24447 -19.94803 -18.47841 -17.87810 -17.27106 -17.06635 -16.61496 -16.10233 -15.58098 -15.47120 -14.97040 -14.91704 -14.76271 -14.56797 -14.38411 -13.84257 -13.67340 -13.34326 -13.14993 -12.99330 -12.72213 -12.34650 -12.09652 -11.96759 -11.90227 -11.85373 -11.81834 -11.36328 -11.17382 -11.02200 -10.55068 -10.20356 -8.99754 -8.51874 -6.22925 0.98296 1.32368 1.46602 1.52784 1.55459 1.64803 1.65113 2.19507 2.25871 2.68880 2.72796 2.86500 3.46696 3.54587 3.70321 3.85823 4.19732 4.30741 4.35054 4.45750 4.48375 4.58875 4.69909 4.72713 4.84888 4.95571 5.11404 5.20098 5.27153 5.32610 5.37483 5.54261 5.70038 6.10859 6.32459 6.47156 6.93050 7.12320 8.60733 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.039353 B = 0.003647 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.346806 B = 7675.411870 C = 7858.707864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.233 3.767 3 C 0.031 3.969 4 C 0.133 3.867 5 N -0.718 5.718 6 C 0.540 3.460 7 O -0.554 6.554 8 C -0.116 4.116 9 S -0.168 6.168 10 C -0.532 4.532 11 H 0.060 0.940 12 C 0.044 3.956 13 N -0.919 5.919 14 Si 0.916 3.084 15 H -0.264 1.264 16 H -0.259 1.259 17 H -0.233 1.233 18 C -0.115 4.115 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.108 4.108 22 H 0.070 0.930 23 H 0.108 0.892 24 H 0.410 0.590 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.277 0.723 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 26.292 -0.202 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.085 4.085 3 C 0.027 3.973 4 C 0.009 3.991 5 N -0.372 5.372 6 C 0.326 3.674 7 O -0.431 6.431 8 C -0.267 4.267 9 S 0.058 5.942 10 C -0.680 4.680 11 H 0.078 0.922 12 C -0.161 4.161 13 N -0.557 5.557 14 Si 0.738 3.262 15 H -0.188 1.188 16 H -0.183 1.183 17 H -0.157 1.157 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.157 4.157 21 C -0.148 4.148 22 H 0.088 0.912 23 H 0.126 0.874 24 H 0.246 0.754 25 H 0.123 0.877 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.724 25.911 1.366 26.571 hybrid contribution -1.053 -0.744 -1.197 1.759 sum 4.671 25.166 0.169 25.597 Atomic orbital electron populations 1.81289 1.14337 1.09770 1.09906 1.29485 0.95164 0.91903 0.91911 1.19424 0.79807 0.97613 1.00438 1.21698 1.01081 0.80693 0.95629 1.45805 1.53281 1.04560 1.33577 1.19798 0.79655 0.84346 0.83614 1.90699 1.38130 1.86557 1.27763 1.23299 1.05024 0.94357 1.04025 1.84617 1.67894 0.98442 1.43222 1.22484 1.35844 0.93385 1.16244 0.92208 1.25603 0.96145 0.95411 0.98924 1.70023 1.44269 1.01618 1.39750 0.85843 0.80778 0.80120 0.79483 1.18830 1.18283 1.15657 1.22661 1.02528 0.99276 0.90934 1.22562 1.01489 0.93701 0.98504 1.22399 1.00209 1.00147 0.92896 1.22284 1.00682 0.92384 0.99403 0.91211 0.87387 0.75412 0.87710 0.86522 0.91348 0.87762 0.90909 0.92031 0.89372 0.90206 0.89421 0.90941 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.29 18.54 20.01 0.37 -11.92 16 2 C 0.23 4.39 12.74 89.44 1.14 5.53 16 3 C 0.03 0.36 0.60 -53.26 -0.03 0.33 16 4 C 0.13 2.14 4.18 86.38 0.36 2.50 16 5 N -0.72 -15.54 5.08 -463.07 -2.35 -17.89 16 6 C 0.54 17.49 7.85 87.66 0.69 18.18 16 7 O -0.55 -22.01 15.86 -3.04 -0.05 -22.06 16 8 C -0.12 -4.31 6.16 71.24 0.44 -3.87 16 9 S -0.17 -8.40 18.55 -56.49 -1.05 -9.45 16 10 C -0.53 -31.05 10.04 67.95 0.68 -30.37 16 11 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 12 C 0.04 2.61 5.50 84.86 0.47 3.08 16 13 N -0.92 -56.21 13.97 21.65 0.30 -55.91 16 14 Si 0.92 44.77 27.74 68.60 1.90 46.67 16 15 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.23 -11.22 6.74 99.48 0.67 -10.55 16 18 C -0.12 -1.00 5.31 31.69 0.17 -0.84 16 19 C -0.13 -0.81 6.91 31.91 0.22 -0.59 16 20 C -0.12 -0.59 6.83 31.67 0.22 -0.37 16 21 C -0.11 -0.82 6.09 31.32 0.19 -0.63 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.11 1.49 8.13 -2.39 -0.02 1.47 16 24 H 0.41 7.32 7.70 -92.71 -0.71 6.61 16 25 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 26 H 0.12 3.91 8.14 -2.40 -0.02 3.89 16 27 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.10 0.75 7.84 -2.38 -0.02 0.73 16 29 H 0.07 0.71 7.82 -2.39 -0.02 0.69 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 35 H 0.10 0.54 7.67 -2.39 -0.02 0.52 16 Total: -1.00 -75.70 313.04 4.01 -71.69 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.35 Total: 5.91 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 4.54 Total: -7.04 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.68 Total: -85.72 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.05 Total: -9.45 kcal Total: -75.70 4.01 -71.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593779615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.283 kcal (2) G-P(sol) polarization free energy of solvation -75.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds