Wall clock time and date at job start Mon Mar 30 2020 05:23:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.47398 * 2 1
4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3
5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1
6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1
7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2
8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2
9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4
10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4
11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4
12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3
13 13 O 1.21278 * 119.99818 * 240.00149 * 12 2 1
14 14 N 1.34777 * 119.99991 * 60.00288 * 12 2 1
15 15 C 1.46499 * 119.99824 * 180.02562 * 14 12 2
16 16 C 1.53002 * 109.47125 * 179.97438 * 15 14 12
17 17 C 1.52997 * 109.47143 * 179.97438 * 16 15 14
18 18 C 1.50699 * 109.47078 * 179.97438 * 17 16 15
19 19 N 1.29022 * 124.91657 * 89.69984 * 18 17 16
20 20 C 1.31784 * 117.12548 * 179.81322 * 19 18 17
21 21 C 1.33637 * 114.49982 * 0.47513 * 20 19 18
22 22 S 1.70977 * 124.91710 * 270.00260 * 18 17 16
23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3
24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3
25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3
26 26 H 0.96999 * 119.99716 * 179.97438 * 7 6 4
27 27 H 0.96998 * 120.00094 * 359.97438 * 14 12 2
28 28 H 1.09004 * 109.47041 * 299.99672 * 15 14 12
29 29 H 1.09002 * 109.47391 * 59.99855 * 15 14 12
30 30 H 1.09004 * 109.46930 * 299.99785 * 16 15 14
31 31 H 1.09002 * 109.47067 * 59.99702 * 16 15 14
32 32 H 1.08993 * 109.47194 * 300.00323 * 17 16 15
33 33 H 1.09002 * 109.47153 * 60.00035 * 17 16 15
34 34 H 1.08006 * 122.74885 * 180.21932 * 20 19 18
35 35 H 1.07999 * 126.03952 * 179.71957 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6532 -1.5885 1.1314
6 6 1.6993 -0.2393 2.4827
7 7 2.1381 -0.8590 3.5565
8 14 0.6259 1.2798 2.6541
9 1 -0.8020 0.8746 2.6992
10 1 0.9773 1.9954 3.9070
11 1 0.8492 2.1773 1.4923
12 6 2.0323 -0.7104 -1.2305
13 8 2.7295 -1.6965 -1.1192
14 7 1.7067 -0.2500 -2.4546
15 6 2.1946 -0.9409 -3.6507
16 6 1.6842 -0.2200 -4.9000
17 6 2.1942 -0.9412 -6.1492
18 6 1.6910 -0.2315 -7.3797
19 7 2.3052 0.7314 -7.9799
20 6 1.7256 1.2399 -9.0487
21 6 0.5527 0.6812 -9.3619
22 16 0.2199 -0.5807 -8.1781
23 1 -0.3633 0.5139 0.8900
24 1 -0.3634 0.5139 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 1.9040 -0.5274 4.4375
27 1 1.1488 0.5385 -2.5436
28 1 3.2846 -0.9414 -3.6509
29 1 1.8308 -1.9685 -3.6506
30 1 0.5941 -0.2199 -4.8996
31 1 2.0476 0.8077 -4.9004
32 1 3.2841 -0.9410 -6.1494
33 1 1.8311 -1.9690 -6.1490
34 1 2.1609 2.0452 -9.6220
35 1 -0.0797 0.9552 -10.1933
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597102322.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:25
Heat of formation + Delta-G solvation = -1.073181 kcal
Electronic energy + Delta-G solvation = -17317.736954 eV
Core-core repulsion = 14442.480603 eV
Total energy + Delta-G solvation = -2875.256351 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.98225 -38.95555 -35.84498 -33.79273 -33.17266 -31.25030 -30.00683 -27.15722
-25.11321 -24.35987 -22.67092 -21.64087 -20.24633 -19.31727 -18.27340 -16.73643
-16.20234 -15.85235 -15.60502 -15.32821 -14.80369 -14.49328 -14.31187 -13.80647
-13.46998 -13.01593 -12.81457 -12.47099 -12.27985 -12.15921 -11.83531 -11.56790
-11.55225 -11.10053 -10.89121 -10.57393 -10.27635 -9.93884 -9.73456 -9.61942
-9.22519 -9.07611 -8.67973 -8.57595 -8.51018 -6.02972 -4.03037 0.37325
1.03423 1.42701 2.51416 3.24732 3.32454 3.37970 3.61594 3.66499
3.93044 4.39760 4.57879 4.76810 4.85692 4.94682 5.12738 5.14189
5.26478 5.34302 5.47542 5.65935 5.80852 5.83354 6.02288 6.10614
6.13902 6.34951 6.46857 6.74604 6.97772 7.18539 7.42314 7.57230
8.14556 8.57991 9.11418 9.18505 9.56217 11.10119
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.041773 B = 0.003140 C = 0.003044
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 670.126970 B = 8914.760508 C = 9195.264686
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.006 4.006
3 H 0.052 0.948
4 C -0.505 4.505
5 H 0.093 0.907
6 C 0.069 3.931
7 N -0.897 5.897
8 Si 0.885 3.115
9 H -0.278 1.278
10 H -0.296 1.296
11 H -0.267 1.267
12 C 0.528 3.472
13 O -0.531 6.531
14 N -0.749 5.749
15 C 0.122 3.878
16 C -0.124 4.124
17 C -0.043 4.043
18 C 0.059 3.941
19 N -0.476 5.476
20 C 0.040 3.960
21 C -0.266 4.266
22 S 0.120 5.880
23 H 0.048 0.952
24 H 0.032 0.968
25 H 0.057 0.943
26 H 0.264 0.736
27 H 0.395 0.605
28 H 0.065 0.935
29 H 0.064 0.936
30 H 0.071 0.929
31 H 0.076 0.924
32 H 0.100 0.900
33 H 0.091 0.909
34 H 0.175 0.825
35 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.955 4.159 -25.951 26.948
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.027 4.027
3 H 0.070 0.930
4 C -0.544 4.544
5 H 0.111 0.889
6 C -0.132 4.132
7 N -0.535 5.535
8 Si 0.715 3.285
9 H -0.205 1.205
10 H -0.223 1.223
11 H -0.193 1.193
12 C 0.316 3.684
13 O -0.406 6.406
14 N -0.404 5.404
15 C -0.003 4.003
16 C -0.163 4.163
17 C -0.085 4.085
18 C -0.219 4.219
19 N -0.190 5.190
20 C -0.111 4.111
21 C -0.405 4.405
22 S 0.374 5.626
23 H 0.067 0.933
24 H 0.051 0.949
25 H 0.076 0.924
26 H 0.074 0.926
27 H 0.228 0.772
28 H 0.083 0.917
29 H 0.082 0.918
30 H 0.090 0.910
31 H 0.095 0.905
32 H 0.119 0.881
33 H 0.109 0.891
34 H 0.192 0.808
35 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -5.719 2.877 -25.292 26.089
hybrid contribution -0.617 2.035 -0.524 2.191
sum -6.336 4.913 -25.816 27.032
Atomic orbital electron populations
1.22111 0.97368 1.01479 0.99187 1.19313 0.93180 0.97562 0.92664
0.93048 1.20956 1.32035 1.14101 0.87262 0.88875 1.24987 0.95860
0.96576 0.95765 1.69884 1.45524 1.40226 0.97858 0.86904 0.80675
0.83844 0.77056 1.20541 1.22339 1.19260 1.21259 0.78910 0.84299
0.83943 1.90581 1.37156 1.26310 1.86522 1.46223 1.55704 1.32752
1.05685 1.21153 0.99424 0.96247 0.83462 1.21781 1.01455 1.00535
0.92551 1.20233 1.02870 0.97961 0.87403 1.27170 0.95317 0.97698
1.01700 1.66298 1.34080 1.10028 1.08590 1.21847 0.92912 1.01733
0.94652 1.27098 1.03207 1.03611 1.06608 1.84135 1.22916 1.34391
1.21167 0.93326 0.94867 0.92373 0.92586 0.77175 0.91677 0.91791
0.91035 0.90549 0.88142 0.89059 0.80770 0.80636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.95 8.57 37.16 0.32 -2.63 16
2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16
3 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16
4 C -0.51 -14.74 8.96 -34.44 -0.31 -15.05 16
5 H 0.09 3.09 7.00 -52.49 -0.37 2.73 16
6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16
7 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16
8 Si 0.88 21.42 24.37 -169.99 -4.14 17.28 16
9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16
10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16
11 H -0.27 -6.02 6.53 56.52 0.37 -5.65 16
12 C 0.53 11.54 7.15 -10.98 -0.08 11.46 16
13 O -0.53 -13.79 15.46 5.56 0.09 -13.70 16
14 N -0.75 -11.93 5.45 -60.29 -0.33 -12.26 16
15 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16
16 C -0.12 -1.19 5.31 -26.73 -0.14 -1.33 16
17 C -0.04 -0.37 5.80 -27.88 -0.16 -0.53 16
18 C 0.06 0.57 6.64 -13.46 -0.09 0.48 16
19 N -0.48 -5.19 10.54 -11.86 -0.13 -5.31 16
20 C 0.04 0.34 11.35 -19.18 -0.22 0.12 16
21 C -0.27 -1.92 11.37 29.12 0.33 -1.59 16
22 S 0.12 0.94 23.18 -107.50 -2.49 -1.55 16
23 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16
24 H 0.03 0.53 7.56 -51.93 -0.39 0.14 16
25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
27 H 0.39 5.21 7.89 -40.82 -0.32 4.89 16
28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16
34 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16
35 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16
LS Contribution 306.30 15.07 4.62 4.62
Total: -1.00 -35.01 306.30 -6.90 -41.91
By element:
Atomic # 1 Polarization: 6.70 SS G_CDS: -4.61 Total: 2.09 kcal
Atomic # 6 Polarization: -5.24 SS G_CDS: -0.68 Total: -5.91 kcal
Atomic # 7 Polarization: -45.04 SS G_CDS: 0.32 Total: -44.72 kcal
Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal
Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -35.01 -6.90 -41.91 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597102322.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.833 kcal
(2) G-P(sol) polarization free energy of solvation -35.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.828 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds