Wall clock time and date at job start Mon Mar 30 2020 05:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 O 1.21278 * 119.99818 * 240.00149 * 12 2 1 14 14 N 1.34777 * 119.99991 * 60.00288 * 12 2 1 15 15 C 1.46499 * 119.99824 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47125 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47143 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47078 * 179.97438 * 17 16 15 19 19 N 1.29022 * 124.91657 * 89.69984 * 18 17 16 20 20 C 1.31784 * 117.12548 * 179.81322 * 19 18 17 21 21 C 1.33637 * 114.49982 * 0.47513 * 20 19 18 22 22 S 1.70977 * 124.91710 * 270.00260 * 18 17 16 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00094 * 359.97438 * 14 12 2 28 28 H 1.09004 * 109.47041 * 299.99672 * 15 14 12 29 29 H 1.09002 * 109.47391 * 59.99855 * 15 14 12 30 30 H 1.09004 * 109.46930 * 299.99785 * 16 15 14 31 31 H 1.09002 * 109.47067 * 59.99702 * 16 15 14 32 32 H 1.08993 * 109.47194 * 300.00323 * 17 16 15 33 33 H 1.09002 * 109.47153 * 60.00035 * 17 16 15 34 34 H 1.08006 * 122.74885 * 180.21932 * 20 19 18 35 35 H 1.07999 * 126.03952 * 179.71957 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 6 1.6842 -0.2200 -4.9000 17 6 2.1942 -0.9412 -6.1492 18 6 1.6910 -0.2315 -7.3797 19 7 2.3052 0.7314 -7.9799 20 6 1.7256 1.2399 -9.0487 21 6 0.5527 0.6812 -9.3619 22 16 0.2199 -0.5807 -8.1781 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9040 -0.5274 4.4375 27 1 1.1488 0.5385 -2.5436 28 1 3.2846 -0.9414 -3.6509 29 1 1.8308 -1.9685 -3.6506 30 1 0.5941 -0.2199 -4.8996 31 1 2.0476 0.8077 -4.9004 32 1 3.2841 -0.9410 -6.1494 33 1 1.8311 -1.9690 -6.1490 34 1 2.1609 2.0452 -9.6220 35 1 -0.0797 0.9552 -10.1933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597102322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:25 Heat of formation + Delta-G solvation = -1.073181 kcal Electronic energy + Delta-G solvation = -17317.736954 eV Core-core repulsion = 14442.480603 eV Total energy + Delta-G solvation = -2875.256351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98225 -38.95555 -35.84498 -33.79273 -33.17266 -31.25030 -30.00683 -27.15722 -25.11321 -24.35987 -22.67092 -21.64087 -20.24633 -19.31727 -18.27340 -16.73643 -16.20234 -15.85235 -15.60502 -15.32821 -14.80369 -14.49328 -14.31187 -13.80647 -13.46998 -13.01593 -12.81457 -12.47099 -12.27985 -12.15921 -11.83531 -11.56790 -11.55225 -11.10053 -10.89121 -10.57393 -10.27635 -9.93884 -9.73456 -9.61942 -9.22519 -9.07611 -8.67973 -8.57595 -8.51018 -6.02972 -4.03037 0.37325 1.03423 1.42701 2.51416 3.24732 3.32454 3.37970 3.61594 3.66499 3.93044 4.39760 4.57879 4.76810 4.85692 4.94682 5.12738 5.14189 5.26478 5.34302 5.47542 5.65935 5.80852 5.83354 6.02288 6.10614 6.13902 6.34951 6.46857 6.74604 6.97772 7.18539 7.42314 7.57230 8.14556 8.57991 9.11418 9.18505 9.56217 11.10119 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.041773 B = 0.003140 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.126970 B = 8914.760508 C = 9195.264686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.006 4.006 3 H 0.052 0.948 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.528 3.472 13 O -0.531 6.531 14 N -0.749 5.749 15 C 0.122 3.878 16 C -0.124 4.124 17 C -0.043 4.043 18 C 0.059 3.941 19 N -0.476 5.476 20 C 0.040 3.960 21 C -0.266 4.266 22 S 0.120 5.880 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.057 0.943 26 H 0.264 0.736 27 H 0.395 0.605 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.175 0.825 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 4.159 -25.951 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.544 4.544 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.316 3.684 13 O -0.406 6.406 14 N -0.404 5.404 15 C -0.003 4.003 16 C -0.163 4.163 17 C -0.085 4.085 18 C -0.219 4.219 19 N -0.190 5.190 20 C -0.111 4.111 21 C -0.405 4.405 22 S 0.374 5.626 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.228 0.772 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.192 0.808 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.719 2.877 -25.292 26.089 hybrid contribution -0.617 2.035 -0.524 2.191 sum -6.336 4.913 -25.816 27.032 Atomic orbital electron populations 1.22111 0.97368 1.01479 0.99187 1.19313 0.93180 0.97562 0.92664 0.93048 1.20956 1.32035 1.14101 0.87262 0.88875 1.24987 0.95860 0.96576 0.95765 1.69884 1.45524 1.40226 0.97858 0.86904 0.80675 0.83844 0.77056 1.20541 1.22339 1.19260 1.21259 0.78910 0.84299 0.83943 1.90581 1.37156 1.26310 1.86522 1.46223 1.55704 1.32752 1.05685 1.21153 0.99424 0.96247 0.83462 1.21781 1.01455 1.00535 0.92551 1.20233 1.02870 0.97961 0.87403 1.27170 0.95317 0.97698 1.01700 1.66298 1.34080 1.10028 1.08590 1.21847 0.92912 1.01733 0.94652 1.27098 1.03207 1.03611 1.06608 1.84135 1.22916 1.34391 1.21167 0.93326 0.94867 0.92373 0.92586 0.77175 0.91677 0.91791 0.91035 0.90549 0.88142 0.89059 0.80770 0.80636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.57 37.16 0.32 -2.63 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 3 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16 4 C -0.51 -14.74 8.96 -34.44 -0.31 -15.05 16 5 H 0.09 3.09 7.00 -52.49 -0.37 2.73 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 8 Si 0.88 21.42 24.37 -169.99 -4.14 17.28 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.02 6.53 56.52 0.37 -5.65 16 12 C 0.53 11.54 7.15 -10.98 -0.08 11.46 16 13 O -0.53 -13.79 15.46 5.56 0.09 -13.70 16 14 N -0.75 -11.93 5.45 -60.29 -0.33 -12.26 16 15 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16 16 C -0.12 -1.19 5.31 -26.73 -0.14 -1.33 16 17 C -0.04 -0.37 5.80 -27.88 -0.16 -0.53 16 18 C 0.06 0.57 6.64 -13.46 -0.09 0.48 16 19 N -0.48 -5.19 10.54 -11.86 -0.13 -5.31 16 20 C 0.04 0.34 11.35 -19.18 -0.22 0.12 16 21 C -0.27 -1.92 11.37 29.12 0.33 -1.59 16 22 S 0.12 0.94 23.18 -107.50 -2.49 -1.55 16 23 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 24 H 0.03 0.53 7.56 -51.93 -0.39 0.14 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.39 5.21 7.89 -40.82 -0.32 4.89 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -35.01 306.30 -6.90 -41.91 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.61 Total: 2.09 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.68 Total: -5.91 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.32 Total: -44.72 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.01 -6.90 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597102322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.833 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds