Wall clock time and date at job start Mon Mar 30 2020 05:23:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.47398 * 2 1
4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3
5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1
6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1
7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2
8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2
9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4
10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4
11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4
12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3
13 13 O 1.21278 * 119.99818 * 240.00149 * 12 2 1
14 14 N 1.34777 * 119.99991 * 60.00288 * 12 2 1
15 15 C 1.46499 * 119.99824 * 180.02562 * 14 12 2
16 16 C 1.53002 * 109.47125 * 179.97438 * 15 14 12
17 17 C 1.52997 * 109.47143 * 179.97438 * 16 15 14
18 18 C 1.50699 * 109.47078 * 179.97438 * 17 16 15
19 19 N 1.29022 * 124.91657 * 89.69984 * 18 17 16
20 20 C 1.31784 * 117.12548 * 179.81322 * 19 18 17
21 21 C 1.33637 * 114.49982 * 0.47513 * 20 19 18
22 22 S 1.70977 * 124.91710 * 270.00260 * 18 17 16
23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3
24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3
25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3
26 26 H 0.96999 * 119.99716 * 179.97438 * 7 6 4
27 27 H 0.96998 * 120.00094 * 359.97438 * 14 12 2
28 28 H 1.09004 * 109.47041 * 299.99672 * 15 14 12
29 29 H 1.09002 * 109.47391 * 59.99855 * 15 14 12
30 30 H 1.09004 * 109.46930 * 299.99785 * 16 15 14
31 31 H 1.09002 * 109.47067 * 59.99702 * 16 15 14
32 32 H 1.08993 * 109.47194 * 300.00323 * 17 16 15
33 33 H 1.09002 * 109.47153 * 60.00035 * 17 16 15
34 34 H 1.08006 * 122.74885 * 180.21932 * 20 19 18
35 35 H 1.07999 * 126.03952 * 179.71957 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6532 -1.5885 1.1314
6 6 1.6993 -0.2393 2.4827
7 7 2.1381 -0.8590 3.5565
8 14 0.6259 1.2798 2.6541
9 1 -0.8020 0.8746 2.6992
10 1 0.9773 1.9954 3.9070
11 1 0.8492 2.1773 1.4923
12 6 2.0323 -0.7104 -1.2305
13 8 2.7295 -1.6965 -1.1192
14 7 1.7067 -0.2500 -2.4546
15 6 2.1946 -0.9409 -3.6507
16 6 1.6842 -0.2200 -4.9000
17 6 2.1942 -0.9412 -6.1492
18 6 1.6910 -0.2315 -7.3797
19 7 2.3052 0.7314 -7.9799
20 6 1.7256 1.2399 -9.0487
21 6 0.5527 0.6812 -9.3619
22 16 0.2199 -0.5807 -8.1781
23 1 -0.3633 0.5139 0.8900
24 1 -0.3634 0.5139 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 1.9040 -0.5274 4.4375
27 1 1.1488 0.5385 -2.5436
28 1 3.2846 -0.9414 -3.6509
29 1 1.8308 -1.9685 -3.6506
30 1 0.5941 -0.2199 -4.8996
31 1 2.0476 0.8077 -4.9004
32 1 3.2841 -0.9410 -6.1494
33 1 1.8311 -1.9690 -6.1490
34 1 2.1609 2.0452 -9.6220
35 1 -0.0797 0.9552 -10.1933
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597102322.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:25
Heat of formation + Delta-G solvation = -27.884561 kcal
Electronic energy + Delta-G solvation = -17318.899582 eV
Core-core repulsion = 14442.480603 eV
Total energy + Delta-G solvation = -2876.418979 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.72118 -40.51479 -36.96261 -35.76932 -34.39289 -33.18204 -30.84693 -28.09035
-27.08376 -25.35683 -24.06065 -22.69699 -21.10765 -20.73199 -18.92740 -18.77725
-17.75487 -17.05124 -16.71734 -16.49120 -16.05243 -15.65538 -15.53089 -14.99208
-14.77661 -14.36188 -14.20733 -13.97301 -13.46635 -13.26204 -13.19555 -12.75384
-12.56002 -12.42598 -12.38833 -12.11700 -11.84401 -11.45381 -11.20052 -10.76536
-10.59986 -10.46246 -10.33330 -9.96906 -9.80114 -8.25762 -6.33638 -0.23165
0.45211 0.83424 1.34652 1.41615 1.52786 1.87823 1.89256 2.35712
2.40586 3.08061 3.20149 3.84674 4.02302 4.10696 4.21155 4.36758
4.42515 4.45447 4.53126 4.61652 4.62863 4.66383 4.76904 4.88175
5.03770 5.11428 5.19263 5.27624 5.47759 5.55140 5.60662 6.28367
6.70639 6.81333 6.87886 7.28068 7.53347 8.92186
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.041773 B = 0.003140 C = 0.003044
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 670.126970 B = 8914.760508 C = 9195.264686
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.010 4.010
3 H 0.069 0.931
4 C -0.523 4.523
5 H 0.028 0.972
6 C 0.004 3.996
7 N -0.955 5.955
8 Si 0.962 3.038
9 H -0.259 1.259
10 H -0.301 1.301
11 H -0.230 1.230
12 C 0.526 3.474
13 O -0.586 6.586
14 N -0.723 5.723
15 C 0.120 3.880
16 C -0.107 4.107
17 C -0.042 4.042
18 C 0.039 3.961
19 N -0.507 5.507
20 C 0.017 3.983
21 C -0.256 4.256
22 S 0.142 5.858
23 H 0.045 0.955
24 H 0.087 0.913
25 H 0.046 0.954
26 H 0.267 0.733
27 H 0.413 0.587
28 H 0.054 0.946
29 H 0.062 0.938
30 H 0.087 0.913
31 H 0.075 0.925
32 H 0.094 0.906
33 H 0.106 0.894
34 H 0.192 0.808
35 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.612 6.611 -28.518 30.514
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.032 4.032
3 H 0.086 0.914
4 C -0.561 4.561
5 H 0.047 0.953
6 C -0.192 4.192
7 N -0.595 5.595
8 Si 0.786 3.214
9 H -0.185 1.185
10 H -0.229 1.229
11 H -0.153 1.153
12 C 0.314 3.686
13 O -0.465 6.465
14 N -0.377 5.377
15 C -0.004 4.004
16 C -0.146 4.146
17 C -0.083 4.083
18 C -0.239 4.239
19 N -0.222 5.222
20 C -0.133 4.133
21 C -0.395 4.395
22 S 0.395 5.605
23 H 0.063 0.937
24 H 0.106 0.894
25 H 0.065 0.935
26 H 0.076 0.924
27 H 0.250 0.750
28 H 0.072 0.928
29 H 0.080 0.920
30 H 0.105 0.895
31 H 0.093 0.907
32 H 0.113 0.887
33 H 0.124 0.876
34 H 0.209 0.791
35 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -8.402 5.362 -27.934 29.659
hybrid contribution 0.273 1.179 0.175 1.222
sum -8.129 6.540 -27.759 29.655
Atomic orbital electron populations
1.22012 0.94305 1.01691 1.01601 1.19275 0.95555 0.97438 0.90928
0.91358 1.21138 1.31603 1.12849 0.90499 0.95316 1.26065 0.97517
1.00804 0.94788 1.70085 1.47744 1.42904 0.98741 0.85675 0.78764
0.78923 0.77990 1.18512 1.22883 1.15312 1.21045 0.78521 0.83627
0.85429 1.90569 1.39771 1.28757 1.87440 1.45912 1.54428 1.32735
1.04646 1.21307 0.98935 0.96521 0.83612 1.21619 1.02202 0.99873
0.90916 1.20204 1.02636 0.98618 0.86867 1.27202 0.96386 0.98023
1.02242 1.66297 1.35339 1.10868 1.09695 1.22185 0.93699 1.02694
0.94705 1.27482 1.02854 1.02462 1.06731 1.84035 1.21411 1.34190
1.20819 0.93687 0.89422 0.93479 0.92421 0.74978 0.92789 0.91972
0.89454 0.90669 0.88744 0.87584 0.79114 0.77898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.20 8.57 71.98 0.62 -4.58 16
2 C -0.01 -0.47 2.23 -12.29 -0.03 -0.50 16
3 H 0.07 2.91 7.20 -2.39 -0.02 2.89 16
4 C -0.52 -31.57 8.96 25.60 0.23 -31.34 16
5 H 0.03 2.05 7.00 -2.91 -0.02 2.03 16
6 C 0.00 0.26 5.45 84.65 0.46 0.72 16
7 N -0.95 -61.89 13.96 21.45 0.30 -61.59 16
8 Si 0.96 43.21 24.37 68.60 1.67 44.89 16
9 H -0.26 -10.84 6.87 99.48 0.68 -10.16 16
10 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16
11 H -0.23 -8.90 6.53 99.48 0.65 -8.25 16
12 C 0.53 22.83 7.15 87.66 0.63 23.46 16
13 O -0.59 -31.68 15.46 -3.02 -0.05 -31.73 16
14 N -0.72 -21.46 5.45 -463.05 -2.52 -23.98 16
15 C 0.12 2.97 5.67 86.38 0.49 3.46 16
16 C -0.11 -1.79 5.31 30.59 0.16 -1.62 16
17 C -0.04 -0.65 5.80 29.85 0.17 -0.48 16
18 C 0.04 0.67 6.64 88.52 0.59 1.26 16
19 N -0.51 -10.30 10.54 -191.45 -2.02 -12.31 16
20 C 0.02 0.26 11.35 83.66 0.95 1.21 16
21 C -0.26 -2.97 11.37 66.78 0.76 -2.21 16
22 S 0.14 1.85 23.18 -56.49 -1.31 0.54 16
23 H 0.04 1.73 3.27 -2.39 -0.01 1.72 16
24 H 0.09 2.32 7.56 -2.39 -0.02 2.30 16
25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
26 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16
27 H 0.41 9.22 7.89 -92.71 -0.73 8.49 16
28 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16
29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
30 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16
31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16
34 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16
35 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16
Total: -1.00 -81.73 306.30 1.39 -80.34
By element:
Atomic # 1 Polarization: 14.19 SS G_CDS: 0.29 Total: 14.48 kcal
Atomic # 6 Polarization: -15.66 SS G_CDS: 5.03 Total: -10.63 kcal
Atomic # 7 Polarization: -93.64 SS G_CDS: -4.24 Total: -97.89 kcal
Atomic # 8 Polarization: -31.68 SS G_CDS: -0.05 Total: -31.73 kcal
Atomic # 14 Polarization: 43.21 SS G_CDS: 1.67 Total: 44.89 kcal
Atomic # 16 Polarization: 1.85 SS G_CDS: -1.31 Total: 0.54 kcal
Total: -81.73 1.39 -80.34 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597102322.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.454 kcal
(2) G-P(sol) polarization free energy of solvation -81.731 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.338 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds