Wall clock time and date at job start Mon Mar 30 2020 05:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 O 1.21278 * 119.99818 * 240.00149 * 12 2 1 14 14 N 1.34777 * 119.99991 * 60.00288 * 12 2 1 15 15 C 1.46499 * 119.99824 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47125 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47143 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47078 * 179.97438 * 17 16 15 19 19 N 1.29022 * 124.91657 * 89.69984 * 18 17 16 20 20 C 1.31784 * 117.12548 * 179.81322 * 19 18 17 21 21 C 1.33637 * 114.49982 * 0.47513 * 20 19 18 22 22 S 1.70977 * 124.91710 * 270.00260 * 18 17 16 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00094 * 359.97438 * 14 12 2 28 28 H 1.09004 * 109.47041 * 299.99672 * 15 14 12 29 29 H 1.09002 * 109.47391 * 59.99855 * 15 14 12 30 30 H 1.09004 * 109.46930 * 299.99785 * 16 15 14 31 31 H 1.09002 * 109.47067 * 59.99702 * 16 15 14 32 32 H 1.08993 * 109.47194 * 300.00323 * 17 16 15 33 33 H 1.09002 * 109.47153 * 60.00035 * 17 16 15 34 34 H 1.08006 * 122.74885 * 180.21932 * 20 19 18 35 35 H 1.07999 * 126.03952 * 179.71957 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 6 1.6842 -0.2200 -4.9000 17 6 2.1942 -0.9412 -6.1492 18 6 1.6910 -0.2315 -7.3797 19 7 2.3052 0.7314 -7.9799 20 6 1.7256 1.2399 -9.0487 21 6 0.5527 0.6812 -9.3619 22 16 0.2199 -0.5807 -8.1781 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9040 -0.5274 4.4375 27 1 1.1488 0.5385 -2.5436 28 1 3.2846 -0.9414 -3.6509 29 1 1.8308 -1.9685 -3.6506 30 1 0.5941 -0.2199 -4.8996 31 1 2.0476 0.8077 -4.9004 32 1 3.2841 -0.9410 -6.1494 33 1 1.8311 -1.9690 -6.1490 34 1 2.1609 2.0452 -9.6220 35 1 -0.0797 0.9552 -10.1933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597102322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:25 Heat of formation + Delta-G solvation = -27.884561 kcal Electronic energy + Delta-G solvation = -17318.899582 eV Core-core repulsion = 14442.480603 eV Total energy + Delta-G solvation = -2876.418979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72118 -40.51479 -36.96261 -35.76932 -34.39289 -33.18204 -30.84693 -28.09035 -27.08376 -25.35683 -24.06065 -22.69699 -21.10765 -20.73199 -18.92740 -18.77725 -17.75487 -17.05124 -16.71734 -16.49120 -16.05243 -15.65538 -15.53089 -14.99208 -14.77661 -14.36188 -14.20733 -13.97301 -13.46635 -13.26204 -13.19555 -12.75384 -12.56002 -12.42598 -12.38833 -12.11700 -11.84401 -11.45381 -11.20052 -10.76536 -10.59986 -10.46246 -10.33330 -9.96906 -9.80114 -8.25762 -6.33638 -0.23165 0.45211 0.83424 1.34652 1.41615 1.52786 1.87823 1.89256 2.35712 2.40586 3.08061 3.20149 3.84674 4.02302 4.10696 4.21155 4.36758 4.42515 4.45447 4.53126 4.61652 4.62863 4.66383 4.76904 4.88175 5.03770 5.11428 5.19263 5.27624 5.47759 5.55140 5.60662 6.28367 6.70639 6.81333 6.87886 7.28068 7.53347 8.92186 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.041773 B = 0.003140 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.126970 B = 8914.760508 C = 9195.264686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.010 4.010 3 H 0.069 0.931 4 C -0.523 4.523 5 H 0.028 0.972 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.962 3.038 9 H -0.259 1.259 10 H -0.301 1.301 11 H -0.230 1.230 12 C 0.526 3.474 13 O -0.586 6.586 14 N -0.723 5.723 15 C 0.120 3.880 16 C -0.107 4.107 17 C -0.042 4.042 18 C 0.039 3.961 19 N -0.507 5.507 20 C 0.017 3.983 21 C -0.256 4.256 22 S 0.142 5.858 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.267 0.733 27 H 0.413 0.587 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.192 0.808 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.612 6.611 -28.518 30.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 H 0.086 0.914 4 C -0.561 4.561 5 H 0.047 0.953 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.786 3.214 9 H -0.185 1.185 10 H -0.229 1.229 11 H -0.153 1.153 12 C 0.314 3.686 13 O -0.465 6.465 14 N -0.377 5.377 15 C -0.004 4.004 16 C -0.146 4.146 17 C -0.083 4.083 18 C -0.239 4.239 19 N -0.222 5.222 20 C -0.133 4.133 21 C -0.395 4.395 22 S 0.395 5.605 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.250 0.750 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.209 0.791 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.402 5.362 -27.934 29.659 hybrid contribution 0.273 1.179 0.175 1.222 sum -8.129 6.540 -27.759 29.655 Atomic orbital electron populations 1.22012 0.94305 1.01691 1.01601 1.19275 0.95555 0.97438 0.90928 0.91358 1.21138 1.31603 1.12849 0.90499 0.95316 1.26065 0.97517 1.00804 0.94788 1.70085 1.47744 1.42904 0.98741 0.85675 0.78764 0.78923 0.77990 1.18512 1.22883 1.15312 1.21045 0.78521 0.83627 0.85429 1.90569 1.39771 1.28757 1.87440 1.45912 1.54428 1.32735 1.04646 1.21307 0.98935 0.96521 0.83612 1.21619 1.02202 0.99873 0.90916 1.20204 1.02636 0.98618 0.86867 1.27202 0.96386 0.98023 1.02242 1.66297 1.35339 1.10868 1.09695 1.22185 0.93699 1.02694 0.94705 1.27482 1.02854 1.02462 1.06731 1.84035 1.21411 1.34190 1.20819 0.93687 0.89422 0.93479 0.92421 0.74978 0.92789 0.91972 0.89454 0.90669 0.88744 0.87584 0.79114 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.57 71.98 0.62 -4.58 16 2 C -0.01 -0.47 2.23 -12.29 -0.03 -0.50 16 3 H 0.07 2.91 7.20 -2.39 -0.02 2.89 16 4 C -0.52 -31.57 8.96 25.60 0.23 -31.34 16 5 H 0.03 2.05 7.00 -2.91 -0.02 2.03 16 6 C 0.00 0.26 5.45 84.65 0.46 0.72 16 7 N -0.95 -61.89 13.96 21.45 0.30 -61.59 16 8 Si 0.96 43.21 24.37 68.60 1.67 44.89 16 9 H -0.26 -10.84 6.87 99.48 0.68 -10.16 16 10 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.23 -8.90 6.53 99.48 0.65 -8.25 16 12 C 0.53 22.83 7.15 87.66 0.63 23.46 16 13 O -0.59 -31.68 15.46 -3.02 -0.05 -31.73 16 14 N -0.72 -21.46 5.45 -463.05 -2.52 -23.98 16 15 C 0.12 2.97 5.67 86.38 0.49 3.46 16 16 C -0.11 -1.79 5.31 30.59 0.16 -1.62 16 17 C -0.04 -0.65 5.80 29.85 0.17 -0.48 16 18 C 0.04 0.67 6.64 88.52 0.59 1.26 16 19 N -0.51 -10.30 10.54 -191.45 -2.02 -12.31 16 20 C 0.02 0.26 11.35 83.66 0.95 1.21 16 21 C -0.26 -2.97 11.37 66.78 0.76 -2.21 16 22 S 0.14 1.85 23.18 -56.49 -1.31 0.54 16 23 H 0.04 1.73 3.27 -2.39 -0.01 1.72 16 24 H 0.09 2.32 7.56 -2.39 -0.02 2.30 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 27 H 0.41 9.22 7.89 -92.71 -0.73 8.49 16 28 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -81.73 306.30 1.39 -80.34 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.29 Total: 14.48 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.03 Total: -10.63 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -4.24 Total: -97.89 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.05 Total: -31.73 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.67 Total: 44.89 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.31 Total: 0.54 kcal Total: -81.73 1.39 -80.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597102322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.454 kcal (2) G-P(sol) polarization free energy of solvation -81.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds