Wall clock time and date at job start Mon Mar 30 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46770 * 2 1 4 4 C 1.50698 * 109.47434 * 240.00069 * 2 1 3 5 5 H 1.08001 * 120.00217 * 245.43796 * 4 2 1 6 6 C 1.37883 * 119.99940 * 65.43015 * 4 2 1 7 7 N 1.31512 * 119.99846 * 184.91328 * 6 4 2 8 8 Si 1.86799 * 120.00031 * 5.19645 * 6 4 2 9 9 H 1.48501 * 109.46912 * 269.71856 * 8 6 4 10 10 H 1.48500 * 109.47253 * 29.71690 * 8 6 4 11 11 H 1.48493 * 109.47364 * 149.72020 * 8 6 4 12 12 C 1.50699 * 109.47058 * 119.99946 * 2 1 3 13 13 O 1.21285 * 119.99938 * 120.00792 * 12 2 1 14 14 N 1.34778 * 120.00132 * 299.99937 * 12 2 1 15 15 C 1.46500 * 119.99988 * 0.02562 * 14 12 2 16 16 C 1.46500 * 119.99969 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.47225 * 90.00165 * 16 14 12 18 18 C 1.50699 * 109.46963 * 179.97438 * 17 16 14 19 19 N 1.29023 * 124.91677 * 89.69936 * 18 17 16 20 20 C 1.31777 * 117.12573 * 179.80996 * 19 18 17 21 21 C 1.33639 * 114.50027 * 0.47251 * 20 19 18 22 22 S 1.70980 * 124.91539 * 270.00025 * 18 17 16 23 23 H 1.09006 * 109.47070 * 175.25418 * 1 2 3 24 24 H 1.08997 * 109.47251 * 295.25233 * 1 2 3 25 25 H 1.08997 * 109.47219 * 55.26331 * 1 2 3 26 26 H 0.97000 * 120.00502 * 355.26935 * 7 6 4 27 27 H 1.09004 * 109.46953 * 89.99260 * 15 14 12 28 28 H 1.08994 * 109.47483 * 209.99825 * 15 14 12 29 29 H 1.09002 * 109.47022 * 330.00439 * 15 14 12 30 30 H 1.09004 * 109.46919 * 210.00234 * 16 14 12 31 31 H 1.08996 * 109.46762 * 330.00122 * 16 14 12 32 32 H 1.08990 * 109.47044 * 299.99926 * 17 16 14 33 33 H 1.09002 * 109.47063 * 59.99915 * 17 16 14 34 34 H 1.07997 * 122.75138 * 180.22016 * 20 19 18 35 35 H 1.07999 * 126.04237 * 179.71667 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5790 -1.6368 -1.1338 6 6 1.7941 -0.1776 -2.4797 7 7 2.1469 -0.8443 -3.5570 8 14 0.9774 1.4946 -2.6416 9 1 -0.4956 1.3210 -2.7144 10 1 1.3198 2.3291 -1.4620 11 1 1.4587 2.1629 -3.8772 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8640 0.9409 2.5890 16 6 2.1955 -0.9402 3.6507 17 6 3.5431 -0.3472 4.0669 18 6 4.0456 -1.0569 5.2977 19 7 4.7862 -2.1134 5.2904 20 6 5.1413 -2.6064 6.4598 21 6 4.6659 -1.9338 7.5122 22 16 3.7107 -0.5829 6.9060 23 1 -0.3633 -1.0242 -0.0850 24 1 -0.3633 0.4384 0.9294 25 1 -0.3633 0.5855 -0.8445 26 1 2.6358 -1.6779 -3.4732 27 1 -0.1838 0.6425 2.6224 28 1 1.1217 1.4665 3.5084 29 1 1.0271 1.5996 1.7360 30 1 1.4776 -0.8151 4.4613 31 1 2.3170 -2.0014 3.4336 32 1 4.2610 -0.4724 3.2564 33 1 3.4216 0.7140 4.2840 34 1 5.7620 -3.4845 6.5596 35 1 4.8364 -2.1757 8.5508 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597434771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:28 Heat of formation + Delta-G solvation = 13.139722 kcal Electronic energy + Delta-G solvation = -18101.727784 eV Core-core repulsion = 15227.087751 eV Total energy + Delta-G solvation = -2874.640033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.87754 -39.25069 -35.46986 -34.08769 -32.73160 -31.00596 -29.11933 -26.69578 -25.37907 -24.67189 -23.32599 -21.38945 -20.05299 -18.52602 -18.11322 -17.37020 -16.12996 -16.02744 -15.52089 -15.00193 -14.39927 -14.27065 -13.95670 -13.46122 -13.30181 -13.22397 -12.63197 -12.34449 -12.29265 -11.88363 -11.76521 -11.70513 -11.32637 -11.11174 -10.92422 -10.44361 -10.17516 -9.76485 -9.74169 -9.59454 -9.12815 -8.71082 -8.61400 -8.37560 -8.24290 -6.39246 -4.01586 0.52818 1.18043 1.56250 2.69721 3.33560 3.39663 3.43300 3.54342 3.56228 4.10944 4.49683 4.89919 4.96609 5.00021 5.13620 5.28674 5.32167 5.34731 5.41621 5.63495 5.65706 5.87168 5.95442 6.01288 6.12726 6.22637 6.39533 6.50693 6.75795 6.95827 7.23933 7.63293 7.71966 8.14851 8.51670 9.05344 9.08283 9.69499 11.02735 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.039114 B = 0.004174 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.690065 B = 6706.617534 C = 7144.727825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.002 4.002 3 H 0.051 0.949 4 C -0.580 4.580 5 H 0.075 0.925 6 C 0.025 3.975 7 N -0.914 5.914 8 Si 1.056 2.944 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.289 1.289 12 C 0.526 3.474 13 O -0.527 6.527 14 N -0.633 5.633 15 C 0.081 3.919 16 C 0.127 3.873 17 C -0.064 4.064 18 C 0.068 3.932 19 N -0.470 5.470 20 C 0.043 3.957 21 C -0.267 4.267 22 S 0.107 5.893 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.269 0.731 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.175 0.825 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 4.858 23.049 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 H 0.069 0.931 4 C -0.619 4.619 5 H 0.093 0.907 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.886 3.114 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.216 1.216 12 C 0.317 3.683 13 O -0.400 6.400 14 N -0.370 5.370 15 C -0.062 4.062 16 C 0.001 3.999 17 C -0.106 4.106 18 C -0.210 4.210 19 N -0.184 5.184 20 C -0.108 4.108 21 C -0.406 4.406 22 S 0.361 5.639 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.192 0.808 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.281 5.964 21.794 22.631 hybrid contribution 1.178 -1.908 1.417 2.653 sum -0.103 4.055 23.210 23.562 Atomic orbital electron populations 1.22331 0.97360 1.01776 0.99768 1.19343 0.93472 0.97335 0.92254 0.93097 1.22059 1.39264 1.10824 0.89724 0.90730 1.25777 0.96755 1.03459 0.91914 1.70770 1.36868 1.17044 1.30156 0.83848 0.76255 0.75724 0.75581 1.21040 1.20696 1.21615 1.21571 0.78685 0.84245 0.83806 1.90586 1.37092 1.26333 1.86010 1.48132 1.52973 1.30118 1.05758 1.21900 0.94347 0.87573 1.02377 1.21200 0.92465 0.98550 0.87654 1.20765 0.99384 0.98152 0.92288 1.27101 0.99109 0.96135 0.98692 1.66321 1.13161 1.10304 1.28628 1.21886 1.01516 1.01684 0.85755 1.27052 1.07428 1.01383 1.04728 1.83954 1.48661 1.28890 1.02422 0.92820 0.93863 0.93115 0.92094 0.92534 0.92152 0.90288 0.91086 0.89496 0.87946 0.89558 0.80759 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.44 37.16 0.31 -2.84 16 2 C 0.00 -0.05 1.41 -92.92 -0.13 -0.19 16 3 H 0.05 1.16 5.90 -51.93 -0.31 0.85 16 4 C -0.58 -16.97 8.72 -34.44 -0.30 -17.27 16 5 H 0.07 2.48 7.00 -52.49 -0.37 2.12 16 6 C 0.02 0.72 5.43 -17.82 -0.10 0.63 16 7 N -0.91 -28.81 13.70 55.43 0.76 -28.05 16 8 Si 1.06 24.91 25.29 -169.99 -4.30 20.61 16 9 H -0.28 -6.28 6.82 56.52 0.39 -5.89 16 10 H -0.28 -5.91 6.35 56.52 0.36 -5.55 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.53 11.82 7.07 -10.99 -0.08 11.74 16 13 O -0.53 -14.05 15.05 5.55 0.08 -13.97 16 14 N -0.63 -10.56 2.87 -181.57 -0.52 -11.08 16 15 C 0.08 1.01 8.81 59.85 0.53 1.53 16 16 C 0.13 1.84 5.39 -4.04 -0.02 1.82 16 17 C -0.06 -0.85 6.12 -27.88 -0.17 -1.02 16 18 C 0.07 0.88 6.64 -13.46 -0.09 0.79 16 19 N -0.47 -6.86 10.54 -11.87 -0.13 -6.98 16 20 C 0.04 0.48 11.35 -19.19 -0.22 0.26 16 21 C -0.27 -2.43 11.37 29.12 0.33 -2.10 16 22 S 0.11 1.03 23.18 -107.50 -2.49 -1.47 16 23 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.04 0.69 4.45 -51.93 -0.23 0.46 16 25 H 0.05 1.04 4.41 -51.93 -0.23 0.81 16 26 H 0.27 8.58 8.72 -40.82 -0.36 8.23 16 27 H 0.06 0.64 6.87 -51.93 -0.36 0.28 16 28 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.08 1.03 6.05 -51.93 -0.31 0.72 16 30 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.09 1.52 7.42 -51.93 -0.39 1.13 16 32 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -35.33 299.15 -6.37 -41.70 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.35 Total: 1.38 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 0.07 Total: -6.65 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.11 Total: -46.12 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.30 Total: 20.61 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.33 -6.37 -41.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597434771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.843 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds