Wall clock time and date at job start Mon Mar 30 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46770 * 2 1 4 4 C 1.50698 * 109.47434 * 240.00069 * 2 1 3 5 5 H 1.08001 * 120.00217 * 245.43796 * 4 2 1 6 6 C 1.37883 * 119.99940 * 65.43015 * 4 2 1 7 7 N 1.31512 * 119.99846 * 184.91328 * 6 4 2 8 8 Si 1.86799 * 120.00031 * 5.19645 * 6 4 2 9 9 H 1.48501 * 109.46912 * 269.71856 * 8 6 4 10 10 H 1.48500 * 109.47253 * 29.71690 * 8 6 4 11 11 H 1.48493 * 109.47364 * 149.72020 * 8 6 4 12 12 C 1.50699 * 109.47058 * 119.99946 * 2 1 3 13 13 O 1.21285 * 119.99938 * 120.00792 * 12 2 1 14 14 N 1.34778 * 120.00132 * 299.99937 * 12 2 1 15 15 C 1.46500 * 119.99988 * 0.02562 * 14 12 2 16 16 C 1.46500 * 119.99969 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.47225 * 90.00165 * 16 14 12 18 18 C 1.50699 * 109.46963 * 179.97438 * 17 16 14 19 19 N 1.29023 * 124.91677 * 89.69936 * 18 17 16 20 20 C 1.31777 * 117.12573 * 179.80996 * 19 18 17 21 21 C 1.33639 * 114.50027 * 0.47251 * 20 19 18 22 22 S 1.70980 * 124.91539 * 270.00025 * 18 17 16 23 23 H 1.09006 * 109.47070 * 175.25418 * 1 2 3 24 24 H 1.08997 * 109.47251 * 295.25233 * 1 2 3 25 25 H 1.08997 * 109.47219 * 55.26331 * 1 2 3 26 26 H 0.97000 * 120.00502 * 355.26935 * 7 6 4 27 27 H 1.09004 * 109.46953 * 89.99260 * 15 14 12 28 28 H 1.08994 * 109.47483 * 209.99825 * 15 14 12 29 29 H 1.09002 * 109.47022 * 330.00439 * 15 14 12 30 30 H 1.09004 * 109.46919 * 210.00234 * 16 14 12 31 31 H 1.08996 * 109.46762 * 330.00122 * 16 14 12 32 32 H 1.08990 * 109.47044 * 299.99926 * 17 16 14 33 33 H 1.09002 * 109.47063 * 59.99915 * 17 16 14 34 34 H 1.07997 * 122.75138 * 180.22016 * 20 19 18 35 35 H 1.07999 * 126.04237 * 179.71667 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5790 -1.6368 -1.1338 6 6 1.7941 -0.1776 -2.4797 7 7 2.1469 -0.8443 -3.5570 8 14 0.9774 1.4946 -2.6416 9 1 -0.4956 1.3210 -2.7144 10 1 1.3198 2.3291 -1.4620 11 1 1.4587 2.1629 -3.8772 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8640 0.9409 2.5890 16 6 2.1955 -0.9402 3.6507 17 6 3.5431 -0.3472 4.0669 18 6 4.0456 -1.0569 5.2977 19 7 4.7862 -2.1134 5.2904 20 6 5.1413 -2.6064 6.4598 21 6 4.6659 -1.9338 7.5122 22 16 3.7107 -0.5829 6.9060 23 1 -0.3633 -1.0242 -0.0850 24 1 -0.3633 0.4384 0.9294 25 1 -0.3633 0.5855 -0.8445 26 1 2.6358 -1.6779 -3.4732 27 1 -0.1838 0.6425 2.6224 28 1 1.1217 1.4665 3.5084 29 1 1.0271 1.5996 1.7360 30 1 1.4776 -0.8151 4.4613 31 1 2.3170 -2.0014 3.4336 32 1 4.2610 -0.4724 3.2564 33 1 3.4216 0.7140 4.2840 34 1 5.7620 -3.4845 6.5596 35 1 4.8364 -2.1757 8.5508 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597434771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:28 Heat of formation + Delta-G solvation = -13.958825 kcal Electronic energy + Delta-G solvation = -18102.902865 eV Core-core repulsion = 15227.087751 eV Total energy + Delta-G solvation = -2875.815114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07619 -40.54953 -36.94483 -35.99539 -34.16302 -32.77298 -30.10773 -27.86481 -26.67101 -26.53974 -24.51628 -22.98516 -20.93483 -20.15875 -19.45062 -18.97393 -17.81330 -17.31208 -16.52774 -16.28347 -15.72896 -15.41252 -15.34685 -14.85099 -14.78064 -14.48608 -13.87392 -13.83229 -13.63371 -13.47481 -13.23700 -12.99099 -12.84461 -12.46166 -12.15412 -12.10771 -11.91742 -11.50145 -10.81083 -10.71214 -10.62108 -10.42157 -10.38393 -9.96078 -9.54136 -8.76694 -6.39926 -0.29570 0.39234 0.75750 1.45471 1.59495 1.74532 1.77446 1.86742 2.13917 2.54617 3.11674 3.21925 3.80468 3.99481 4.04540 4.15076 4.36221 4.38456 4.42966 4.45275 4.52840 4.67775 4.70089 4.78228 4.86234 4.96368 5.04643 5.08525 5.18517 5.52701 5.64840 5.82614 6.03532 6.51460 6.58231 6.82245 7.38698 7.46148 8.64005 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.039114 B = 0.004174 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.690065 B = 6706.617534 C = 7144.727825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.006 4.006 3 H 0.073 0.927 4 C -0.592 4.592 5 H 0.008 0.992 6 C -0.033 4.033 7 N -0.947 5.947 8 Si 1.099 2.901 9 H -0.253 1.253 10 H -0.231 1.231 11 H -0.296 1.296 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.620 5.620 15 C 0.064 3.936 16 C 0.128 3.872 17 C -0.055 4.055 18 C 0.029 3.971 19 N -0.520 5.520 20 C 0.013 3.987 21 C -0.250 4.250 22 S 0.181 5.819 23 H 0.030 0.970 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.244 0.756 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.188 0.812 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 8.540 27.030 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 H 0.091 0.909 4 C -0.631 4.631 5 H 0.027 0.973 6 C -0.227 4.227 7 N -0.584 5.584 8 Si 0.918 3.082 9 H -0.178 1.178 10 H -0.154 1.154 11 H -0.223 1.223 12 C 0.309 3.691 13 O -0.471 6.471 14 N -0.353 5.353 15 C -0.077 4.077 16 C 0.004 3.996 17 C -0.097 4.097 18 C -0.248 4.248 19 N -0.236 5.236 20 C -0.138 4.138 21 C -0.389 4.389 22 S 0.434 5.566 23 H 0.050 0.950 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.205 0.795 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.683 9.667 25.853 27.846 hybrid contribution 1.987 -3.140 0.363 3.733 sum -1.697 6.528 26.216 27.070 Atomic orbital electron populations 1.22233 0.94158 1.01166 1.02902 1.19295 0.95847 0.97358 0.90290 0.90912 1.22193 1.38597 1.09039 0.93227 0.97318 1.27691 0.96654 1.07281 0.91117 1.70940 1.38991 1.16851 1.31625 0.83446 0.76874 0.70604 0.77282 1.17846 1.15426 1.22320 1.21456 0.78345 0.83601 0.85702 1.90569 1.40111 1.29189 1.87198 1.48025 1.52117 1.30852 1.04323 1.22345 0.94680 0.85816 1.04849 1.21318 0.94475 0.96194 0.87632 1.20589 0.97369 1.00047 0.91658 1.26943 1.00534 0.96698 1.00589 1.66284 1.14438 1.11673 1.31188 1.22153 1.03038 1.03010 0.85556 1.27565 1.05274 1.00195 1.05902 1.83567 1.47032 1.27530 0.98475 0.95033 0.88478 0.92539 0.94696 0.90280 0.87560 0.90294 0.86535 0.93660 0.92483 0.86248 0.79489 0.77114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 8.44 71.98 0.61 -4.99 16 2 C -0.01 -0.29 1.41 -12.29 -0.02 -0.31 16 3 H 0.07 3.09 5.90 -2.39 -0.01 3.08 16 4 C -0.59 -36.45 8.72 25.60 0.22 -36.23 16 5 H 0.01 0.62 7.00 -2.91 -0.02 0.60 16 6 C -0.03 -1.97 5.43 84.66 0.46 -1.51 16 7 N -0.95 -63.00 13.70 21.45 0.29 -62.71 16 8 Si 1.10 48.35 25.29 68.60 1.73 50.09 16 9 H -0.25 -9.96 6.82 99.48 0.68 -9.28 16 10 H -0.23 -8.28 6.35 99.48 0.63 -7.65 16 11 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.52 23.77 7.07 87.66 0.62 24.39 16 13 O -0.59 -34.13 15.05 -3.05 -0.05 -34.17 16 14 N -0.62 -19.47 2.87 -846.75 -2.43 -21.91 16 15 C 0.06 1.23 8.81 127.77 1.13 2.36 16 16 C 0.13 3.59 5.39 86.38 0.47 4.05 16 17 C -0.05 -1.43 6.12 29.85 0.18 -1.25 16 18 C 0.03 0.74 6.64 88.52 0.59 1.32 16 19 N -0.52 -15.50 10.54 -191.45 -2.02 -17.52 16 20 C 0.01 0.27 11.35 83.66 0.95 1.22 16 21 C -0.25 -3.78 11.37 66.78 0.76 -3.02 16 22 S 0.18 2.80 23.18 -56.49 -1.31 1.49 16 23 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.10 2.61 4.45 -2.39 -0.01 2.60 16 25 H 0.06 2.09 4.41 -2.39 -0.01 2.07 16 26 H 0.24 16.95 8.72 -92.71 -0.81 16.14 16 27 H 0.08 1.25 6.87 -2.38 -0.02 1.24 16 28 H 0.11 1.18 8.07 -2.39 -0.02 1.16 16 29 H 0.08 1.60 6.05 -2.39 -0.01 1.58 16 30 H 0.12 2.19 8.07 -2.39 -0.02 2.17 16 31 H 0.04 1.66 7.42 -2.39 -0.02 1.64 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.19 3.21 8.06 -2.91 -0.02 3.18 16 35 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -88.95 299.15 3.15 -85.81 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.96 Total: 12.88 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.96 Total: -13.96 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -4.16 Total: -102.14 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.05 Total: -34.17 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.73 Total: 50.09 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.31 Total: 1.49 kcal Total: -88.95 3.15 -85.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597434771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.850 kcal (2) G-P(sol) polarization free energy of solvation -88.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds