Wall clock time and date at job start Mon Mar 30 2020 05:23:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09007 * 109.47427 * 2 1
4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3
5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1
6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1
7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2
8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2
9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4
10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4
11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4
12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3
13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1
14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1
15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2
16 16 C 1.47199 * 109.22204 * 60.59897 * 15 14 12
17 17 N 4.98951 * 87.35119 * 227.14893 * 2 1 3
18 18 C 1.52586 * 109.22385 * 301.23729 * 15 14 12
19 19 C 1.53097 * 109.95491 * 168.99872 * 18 15 14
20 20 S 1.81752 * 108.83787 * 63.02956 * 19 18 15
21 21 C 1.81748 * 102.21807 * 306.72956 * 20 19 18
22 22 C 1.52579 * 109.22815 * 180.02562 * 15 14 12
23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3
25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3
26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4
27 27 H 0.97002 * 120.00040 * 0.02562 * 14 12 2
28 28 H 1.08994 * 109.39313 * 289.15243 * 18 15 14
29 29 H 1.09004 * 109.39113 * 48.85713 * 18 15 14
30 30 H 1.08995 * 109.58022 * 303.22027 * 19 18 15
31 31 H 1.09002 * 109.68372 * 182.89258 * 19 18 15
32 32 H 1.08994 * 109.58210 * 293.45809 * 21 20 19
33 33 H 1.09002 * 109.68076 * 173.13476 * 21 20 19
34 34 H 1.08998 * 109.39001 * 311.14426 * 22 15 14
35 35 H 1.08997 * 109.39183 * 70.94513 * 22 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.6532 -1.5886 1.1312
6 6 1.6946 -0.2428 2.4826
7 7 0.9386 0.8265 2.6034
8 14 2.3109 -1.1280 4.0077
9 1 3.7959 -1.1287 4.0136
10 1 1.8119 -0.4309 5.2203
11 1 1.8152 -2.5279 4.0019
12 6 2.0323 -0.7103 -1.2306
13 8 2.7295 -1.6965 -1.1194
14 7 1.7067 -0.2498 -2.4546
15 6 2.1945 -0.9406 -3.6509
16 6 1.6885 -2.3229 -3.6525
17 7 1.2994 -3.3897 -3.6540
18 6 3.7201 -0.9649 -3.6300
19 6 4.2425 -1.9095 -4.7156
20 16 3.7418 -1.2693 -6.3413
21 6 1.9470 -1.0666 -6.1387
22 6 1.6835 -0.2165 -4.8928
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5139 -0.8900
26 1 0.7006 1.1552 3.4844
27 1 1.1493 0.5391 -2.5435
28 1 4.1005 0.0403 -3.8112
29 1 4.0632 -1.3097 -2.6545
30 1 3.8204 -2.9037 -4.5688
31 1 5.3299 -1.9631 -4.6634
32 1 1.4801 -2.0442 -6.0196
33 1 1.5327 -0.5682 -7.0151
34 1 0.6121 -0.0415 -4.7945
35 1 2.1985 0.7390 -4.9923
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597439671.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:20
Heat of formation + Delta-G solvation = -13.880537 kcal
Electronic energy + Delta-G solvation = -18735.147343 eV
Core-core repulsion = 15859.335624 eV
Total energy + Delta-G solvation = -2875.811719 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.18075 -37.57585 -35.28167 -33.87097 -32.88952 -31.88196 -30.45556 -26.91370
-25.21076 -23.56804 -22.78040 -22.43997 -19.61057 -17.68542 -17.27902 -16.25539
-15.96348 -15.58135 -15.14416 -14.55148 -14.26813 -13.92126 -13.51701 -13.45328
-13.28031 -12.98393 -12.79712 -12.58226 -12.29834 -12.22617 -11.79374 -11.68849
-11.48426 -11.08329 -10.84972 -10.76938 -10.67829 -10.35775 -10.03622 -9.96107
-9.08704 -8.97604 -8.73655 -8.40777 -7.87724 -6.09792 -4.13482 1.53828
2.28133 2.64764 2.86469 3.32399 3.35483 3.35981 3.41036 3.63524
3.90340 4.31026 4.41430 4.50923 4.64659 4.90748 4.94054 5.08295
5.23319 5.24239 5.39883 5.57057 5.59979 5.81504 6.01243 6.13309
6.51066 6.65260 6.72019 6.82659 7.35957 7.62114 7.66253 7.84700
8.00610 8.26538 8.93527 8.98005 9.52452 10.97622
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.036178 B = 0.004902 C = 0.004733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 773.760169 B = 5711.029429 C = 5913.995567
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.033 3.967
3 H 0.057 0.943
4 C -0.504 4.504
5 H 0.074 0.926
6 C 0.060 3.940
7 N -0.895 5.895
8 Si 0.901 3.099
9 H -0.276 1.276
10 H -0.287 1.287
11 H -0.277 1.277
12 C 0.522 3.478
13 O -0.530 6.530
14 N -0.735 5.735
15 C 0.273 3.727
16 C 0.206 3.794
17 N -0.418 5.418
18 C -0.134 4.134
19 C -0.080 4.080
20 S -0.263 6.263
21 C -0.084 4.084
22 C -0.122 4.122
23 H 0.030 0.970
24 H 0.095 0.905
25 H 0.013 0.987
26 H 0.262 0.738
27 H 0.407 0.593
28 H 0.097 0.903
29 H 0.114 0.886
30 H 0.083 0.917
31 H 0.114 0.886
32 H 0.083 0.917
33 H 0.116 0.884
34 H 0.092 0.908
35 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.763 2.871 -16.003 16.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.012 3.988
3 H 0.075 0.925
4 C -0.542 4.542
5 H 0.092 0.908
6 C -0.141 4.141
7 N -0.535 5.535
8 Si 0.728 3.272
9 H -0.201 1.201
10 H -0.213 1.213
11 H -0.202 1.202
12 C 0.312 3.688
13 O -0.404 6.404
14 N -0.392 5.392
15 C 0.182 3.818
16 C -0.114 4.114
17 N -0.094 5.094
18 C -0.174 4.174
19 C -0.228 4.228
20 S -0.036 6.036
21 C -0.233 4.233
22 C -0.162 4.162
23 H 0.049 0.951
24 H 0.114 0.886
25 H 0.032 0.968
26 H 0.072 0.928
27 H 0.243 0.757
28 H 0.115 0.885
29 H 0.132 0.868
30 H 0.101 0.899
31 H 0.133 0.867
32 H 0.102 0.898
33 H 0.134 0.866
34 H 0.111 0.889
35 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 2.237 0.853 -16.632 16.803
hybrid contribution -0.678 -0.011 1.888 2.006
sum 1.559 0.842 -14.744 14.850
Atomic orbital electron populations
1.21774 0.96432 0.99889 1.01146 1.18892 0.94168 0.96967 0.88761
0.92512 1.21069 1.31266 1.12994 0.88917 0.90832 1.24926 0.94999
0.95026 0.99109 1.69843 1.36805 1.23024 1.23778 0.86508 0.79293
0.79755 0.81609 1.20126 1.21307 1.20237 1.22245 0.78129 0.84201
0.84214 1.90533 1.37240 1.26379 1.86294 1.46537 1.56038 1.32541
1.04034 1.17579 0.94339 0.81706 0.88167 1.29322 0.93632 0.95159
0.93282 1.81097 1.08418 1.12099 1.07759 1.22241 0.91900 1.01509
1.01792 1.23528 1.05188 1.01422 0.92704 1.86810 1.08167 1.86474
1.22193 1.23458 0.94905 1.03500 1.01412 1.22017 1.03562 0.99747
0.90859 0.95083 0.88598 0.96815 0.92809 0.75696 0.88479 0.86757
0.89884 0.86729 0.89794 0.86554 0.88921 0.87585
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.93 8.86 37.16 0.33 -2.60 16
2 C 0.03 0.77 2.64 -92.92 -0.25 0.52 16
3 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16
4 C -0.50 -13.74 8.38 -34.44 -0.29 -14.03 16
5 H 0.07 2.13 6.75 -52.49 -0.35 1.77 16
6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16
7 N -0.90 -24.31 11.31 55.43 0.63 -23.68 16
8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16
9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
12 C 0.52 10.73 6.50 -10.98 -0.07 10.66 16
13 O -0.53 -12.58 12.55 5.56 0.07 -12.51 16
14 N -0.74 -10.94 4.96 -50.63 -0.25 -11.19 16
15 C 0.27 3.57 0.76 -135.03 -0.10 3.47 16
16 C 0.21 3.38 9.21 -20.77 -0.19 3.19 16
17 N -0.42 -7.85 18.53 42.14 0.78 -7.06 16
18 C -0.13 -1.71 4.69 -26.89 -0.13 -1.83 16
19 C -0.08 -0.93 6.15 37.21 0.23 -0.70 16
20 S -0.26 -2.80 22.33 -107.50 -2.40 -5.20 16
21 C -0.08 -0.76 6.15 37.21 0.23 -0.53 16
22 C -0.12 -1.07 4.74 -26.89 -0.13 -1.20 16
23 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
24 H 0.10 2.33 6.06 -51.93 -0.31 2.01 16
25 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16
26 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16
27 H 0.41 4.84 7.88 -40.82 -0.32 4.52 16
28 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16
29 H 0.11 1.84 5.79 -51.93 -0.30 1.54 16
30 H 0.08 1.11 6.86 -51.93 -0.36 0.76 16
31 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16
32 H 0.08 0.89 6.86 -51.93 -0.36 0.53 16
33 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16
34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.11 0.74 8.05 -51.93 -0.42 0.33 16
LS Contribution 296.84 15.07 4.47 4.47
Total: -1.00 -31.29 296.84 -6.66 -37.96
By element:
Atomic # 1 Polarization: 6.78 SS G_CDS: -4.48 Total: 2.30 kcal
Atomic # 6 Polarization: -1.06 SS G_CDS: -0.46 Total: -1.52 kcal
Atomic # 7 Polarization: -43.09 SS G_CDS: 1.16 Total: -41.94 kcal
Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal
Atomic # 16 Polarization: -2.80 SS G_CDS: -2.40 Total: -5.20 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -31.29 -6.66 -37.96 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597439671.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.076 kcal
(2) G-P(sol) polarization free energy of solvation -31.293 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.881 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds