Wall clock time and date at job start Mon Mar 30 2020 05:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 C 1.47199 * 109.22204 * 60.59897 * 15 14 12 17 17 N 4.98951 * 87.35119 * 227.14893 * 2 1 3 18 18 C 1.52586 * 109.22385 * 301.23729 * 15 14 12 19 19 C 1.53097 * 109.95491 * 168.99872 * 18 15 14 20 20 S 1.81752 * 108.83787 * 63.02956 * 19 18 15 21 21 C 1.81748 * 102.21807 * 306.72956 * 20 19 18 22 22 C 1.52579 * 109.22815 * 180.02562 * 15 14 12 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 28 28 H 1.08994 * 109.39313 * 289.15243 * 18 15 14 29 29 H 1.09004 * 109.39113 * 48.85713 * 18 15 14 30 30 H 1.08995 * 109.58022 * 303.22027 * 19 18 15 31 31 H 1.09002 * 109.68372 * 182.89258 * 19 18 15 32 32 H 1.08994 * 109.58210 * 293.45809 * 21 20 19 33 33 H 1.09002 * 109.68076 * 173.13476 * 21 20 19 34 34 H 1.08998 * 109.39001 * 311.14426 * 22 15 14 35 35 H 1.08997 * 109.39183 * 70.94513 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 6 1.6885 -2.3229 -3.6525 17 7 1.2994 -3.3897 -3.6540 18 6 3.7201 -0.9649 -3.6300 19 6 4.2425 -1.9095 -4.7156 20 16 3.7418 -1.2693 -6.3413 21 6 1.9470 -1.0666 -6.1387 22 6 1.6835 -0.2165 -4.8928 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7006 1.1552 3.4844 27 1 1.1493 0.5391 -2.5435 28 1 4.1005 0.0403 -3.8112 29 1 4.0632 -1.3097 -2.6545 30 1 3.8204 -2.9037 -4.5688 31 1 5.3299 -1.9631 -4.6634 32 1 1.4801 -2.0442 -6.0196 33 1 1.5327 -0.5682 -7.0151 34 1 0.6121 -0.0415 -4.7945 35 1 2.1985 0.7390 -4.9923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597439671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:20 Heat of formation + Delta-G solvation = -13.880537 kcal Electronic energy + Delta-G solvation = -18735.147343 eV Core-core repulsion = 15859.335624 eV Total energy + Delta-G solvation = -2875.811719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18075 -37.57585 -35.28167 -33.87097 -32.88952 -31.88196 -30.45556 -26.91370 -25.21076 -23.56804 -22.78040 -22.43997 -19.61057 -17.68542 -17.27902 -16.25539 -15.96348 -15.58135 -15.14416 -14.55148 -14.26813 -13.92126 -13.51701 -13.45328 -13.28031 -12.98393 -12.79712 -12.58226 -12.29834 -12.22617 -11.79374 -11.68849 -11.48426 -11.08329 -10.84972 -10.76938 -10.67829 -10.35775 -10.03622 -9.96107 -9.08704 -8.97604 -8.73655 -8.40777 -7.87724 -6.09792 -4.13482 1.53828 2.28133 2.64764 2.86469 3.32399 3.35483 3.35981 3.41036 3.63524 3.90340 4.31026 4.41430 4.50923 4.64659 4.90748 4.94054 5.08295 5.23319 5.24239 5.39883 5.57057 5.59979 5.81504 6.01243 6.13309 6.51066 6.65260 6.72019 6.82659 7.35957 7.62114 7.66253 7.84700 8.00610 8.26538 8.93527 8.98005 9.52452 10.97622 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.036178 B = 0.004902 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.760169 B = 5711.029429 C = 5913.995567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.033 3.967 3 H 0.057 0.943 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.530 6.530 14 N -0.735 5.735 15 C 0.273 3.727 16 C 0.206 3.794 17 N -0.418 5.418 18 C -0.134 4.134 19 C -0.080 4.080 20 S -0.263 6.263 21 C -0.084 4.084 22 C -0.122 4.122 23 H 0.030 0.970 24 H 0.095 0.905 25 H 0.013 0.987 26 H 0.262 0.738 27 H 0.407 0.593 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 2.871 -16.003 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.075 0.925 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.404 6.404 14 N -0.392 5.392 15 C 0.182 3.818 16 C -0.114 4.114 17 N -0.094 5.094 18 C -0.174 4.174 19 C -0.228 4.228 20 S -0.036 6.036 21 C -0.233 4.233 22 C -0.162 4.162 23 H 0.049 0.951 24 H 0.114 0.886 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.243 0.757 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.237 0.853 -16.632 16.803 hybrid contribution -0.678 -0.011 1.888 2.006 sum 1.559 0.842 -14.744 14.850 Atomic orbital electron populations 1.21774 0.96432 0.99889 1.01146 1.18892 0.94168 0.96967 0.88761 0.92512 1.21069 1.31266 1.12994 0.88917 0.90832 1.24926 0.94999 0.95026 0.99109 1.69843 1.36805 1.23024 1.23778 0.86508 0.79293 0.79755 0.81609 1.20126 1.21307 1.20237 1.22245 0.78129 0.84201 0.84214 1.90533 1.37240 1.26379 1.86294 1.46537 1.56038 1.32541 1.04034 1.17579 0.94339 0.81706 0.88167 1.29322 0.93632 0.95159 0.93282 1.81097 1.08418 1.12099 1.07759 1.22241 0.91900 1.01509 1.01792 1.23528 1.05188 1.01422 0.92704 1.86810 1.08167 1.86474 1.22193 1.23458 0.94905 1.03500 1.01412 1.22017 1.03562 0.99747 0.90859 0.95083 0.88598 0.96815 0.92809 0.75696 0.88479 0.86757 0.89884 0.86729 0.89794 0.86554 0.88921 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.86 37.16 0.33 -2.60 16 2 C 0.03 0.77 2.64 -92.92 -0.25 0.52 16 3 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -13.74 8.38 -34.44 -0.29 -14.03 16 5 H 0.07 2.13 6.75 -52.49 -0.35 1.77 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.31 11.31 55.43 0.63 -23.68 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.52 10.73 6.50 -10.98 -0.07 10.66 16 13 O -0.53 -12.58 12.55 5.56 0.07 -12.51 16 14 N -0.74 -10.94 4.96 -50.63 -0.25 -11.19 16 15 C 0.27 3.57 0.76 -135.03 -0.10 3.47 16 16 C 0.21 3.38 9.21 -20.77 -0.19 3.19 16 17 N -0.42 -7.85 18.53 42.14 0.78 -7.06 16 18 C -0.13 -1.71 4.69 -26.89 -0.13 -1.83 16 19 C -0.08 -0.93 6.15 37.21 0.23 -0.70 16 20 S -0.26 -2.80 22.33 -107.50 -2.40 -5.20 16 21 C -0.08 -0.76 6.15 37.21 0.23 -0.53 16 22 C -0.12 -1.07 4.74 -26.89 -0.13 -1.20 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.10 2.33 6.06 -51.93 -0.31 2.01 16 25 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 26 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.41 4.84 7.88 -40.82 -0.32 4.52 16 28 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 29 H 0.11 1.84 5.79 -51.93 -0.30 1.54 16 30 H 0.08 1.11 6.86 -51.93 -0.36 0.76 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 0.89 6.86 -51.93 -0.36 0.53 16 33 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 0.74 8.05 -51.93 -0.42 0.33 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -31.29 296.84 -6.66 -37.96 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.48 Total: 2.30 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.46 Total: -1.52 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 1.16 Total: -41.94 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.40 Total: -5.20 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.29 -6.66 -37.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597439671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.076 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds