Wall clock time and date at job start Mon Mar 30 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.50699 * 109.47389 * 120.00069 * 2 1 3 5 5 H 1.07996 * 120.00370 * 119.99774 * 4 2 1 6 6 C 1.37882 * 119.99790 * 300.00156 * 4 2 1 7 7 N 1.31516 * 119.99980 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99622 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47409 * 59.99864 * 8 6 4 10 10 H 1.48506 * 109.46650 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47066 * 299.99495 * 8 6 4 12 12 C 1.50696 * 109.46999 * 240.00243 * 2 1 3 13 13 O 1.21284 * 120.00109 * 239.99682 * 12 2 1 14 14 N 1.34777 * 120.00137 * 59.99467 * 12 2 1 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.46684 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47317 * 55.00694 * 16 15 14 18 18 C 1.53002 * 109.47645 * 294.99878 * 16 15 14 19 19 C 1.50710 * 109.46737 * 175.00092 * 16 15 14 20 20 N 1.29025 * 124.91499 * 59.70192 * 19 16 15 21 21 C 1.31776 * 117.12216 * 179.81535 * 20 19 16 22 22 C 1.33637 * 114.50398 * 0.46633 * 21 20 19 23 23 S 1.70973 * 124.91672 * 239.99906 * 19 16 15 24 24 H 1.09001 * 109.47142 * 59.99947 * 1 2 3 25 25 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46838 * 299.99496 * 1 2 3 27 27 H 0.97002 * 119.99804 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00018 * 0.27749 * 14 12 2 29 29 H 1.09000 * 109.47212 * 300.00355 * 15 14 12 30 30 H 1.09001 * 109.46577 * 60.00430 * 15 14 12 31 31 H 1.09006 * 109.46455 * 60.00000 * 18 16 15 32 32 H 1.08998 * 109.47381 * 179.97438 * 18 16 15 33 33 H 1.08993 * 109.47092 * 300.00720 * 18 16 15 34 34 H 1.08003 * 122.74677 * 180.22294 * 21 20 19 35 35 H 1.08001 * 126.04213 * 179.72549 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.8077 -1.1189 4.0076 10 1 1.8280 -0.4192 5.2204 11 1 1.8282 -2.5198 4.0081 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1954 -0.9402 -3.6508 16 6 1.6857 -0.2187 -4.8999 17 1 1.9741 0.8316 -4.8560 18 6 0.1609 -0.3267 -4.9650 19 6 2.2871 -0.8537 -6.1273 20 7 2.1402 -2.0898 -6.4665 21 6 2.7327 -2.4828 -7.5760 22 6 3.4255 -1.5273 -8.2028 23 16 3.2686 -0.0420 -7.2680 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7089 1.1614 3.4844 28 1 1.1523 0.5410 -2.5435 29 1 3.2854 -0.9398 -3.6506 30 1 1.8325 -1.9680 -3.6509 31 1 -0.2740 0.1325 -4.0772 32 1 -0.2022 0.1877 -5.8547 33 1 -0.1273 -1.3769 -5.0089 34 1 2.6671 -3.4953 -7.9463 35 1 3.9835 -1.6448 -9.1201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597500484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:18 Heat of formation + Delta-G solvation = -6.451996 kcal Electronic energy + Delta-G solvation = -17802.167626 eV Core-core repulsion = 14926.678032 eV Total energy + Delta-G solvation = -2875.489594 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00683 -38.77656 -35.97998 -33.68677 -32.58187 -30.39805 -29.51881 -26.53160 -25.40783 -25.07704 -22.65885 -21.70949 -19.58447 -19.39926 -18.04983 -16.34111 -16.08895 -15.72285 -15.17563 -15.06188 -14.61659 -14.21299 -13.95878 -13.80235 -13.32287 -12.85732 -12.65981 -12.38054 -11.85526 -11.75092 -11.53078 -11.29494 -11.13829 -10.96192 -10.70066 -10.65035 -10.20972 -9.93183 -9.76803 -9.60433 -9.11354 -8.94773 -8.57239 -8.40470 -8.28268 -5.99829 -4.02602 0.49803 1.14176 1.53444 2.65909 3.39184 3.41150 3.47009 3.74751 3.79413 4.11628 4.50825 4.73678 4.78692 4.91398 4.96805 5.22957 5.28128 5.33513 5.63921 5.74461 5.90690 5.92082 6.02902 6.21618 6.36470 6.65584 6.86650 6.96468 7.09799 7.51370 7.56522 7.79503 8.02540 8.18618 8.48989 9.06336 9.29194 9.62866 11.07808 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.042958 B = 0.003609 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.644381 B = 7757.121128 C = 8006.304716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.519 3.481 13 O -0.545 6.545 14 N -0.746 5.746 15 C 0.136 3.864 16 C -0.026 4.026 17 H 0.095 0.905 18 C -0.139 4.139 19 C 0.066 3.934 20 N -0.468 5.468 21 C 0.042 3.958 22 C -0.266 4.266 23 S 0.117 5.883 24 H 0.012 0.988 25 H 0.031 0.969 26 H 0.093 0.907 27 H 0.261 0.739 28 H 0.395 0.605 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.176 0.824 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 1.316 -21.367 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.421 6.421 14 N -0.402 5.402 15 C 0.010 3.990 16 C -0.048 4.048 17 H 0.113 0.887 18 C -0.198 4.198 19 C -0.213 4.213 20 N -0.181 5.181 21 C -0.109 4.109 22 C -0.405 4.405 23 S 0.372 5.628 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.229 0.771 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.193 0.807 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.034 1.359 -20.918 20.988 hybrid contribution 0.100 -0.973 0.205 1.000 sum 1.134 0.385 -20.713 20.748 Atomic orbital electron populations 1.21740 0.96527 0.99843 1.00876 1.18867 0.94157 0.96804 0.89311 0.93003 1.21122 1.30947 1.12802 0.89047 0.90853 1.24945 0.95137 0.95071 0.99078 1.69862 1.37177 1.23102 1.23590 0.86512 0.79284 0.79738 0.81636 1.20211 1.21405 1.20196 1.21976 0.78456 0.84309 0.84354 1.90539 1.37892 1.26884 1.86742 1.46280 1.55874 1.32535 1.05474 1.21089 0.98736 0.96679 0.82528 1.20096 0.96877 0.99048 0.88786 0.88666 1.21814 0.92093 1.03616 1.02280 1.26967 1.00409 0.92631 1.01250 1.66215 1.22381 1.13950 1.15599 1.21851 0.96548 1.01307 0.91199 1.27072 1.10255 0.95860 1.07349 1.84053 1.46449 1.14444 1.17837 0.96913 0.94981 0.88886 0.92948 0.77057 0.92221 0.90906 0.90948 0.92470 0.91184 0.80744 0.80651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.87 37.16 0.33 -2.69 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 11.97 7.15 -10.99 -0.08 11.89 16 13 O -0.54 -14.60 15.46 5.55 0.09 -14.52 16 14 N -0.75 -12.87 5.17 -60.29 -0.31 -13.18 16 15 C 0.14 2.09 5.04 -4.04 -0.02 2.07 16 16 C -0.03 -0.29 2.86 -91.77 -0.26 -0.56 16 17 H 0.10 0.92 8.12 -51.93 -0.42 0.49 16 18 C -0.14 -1.47 9.04 37.16 0.34 -1.14 16 19 C 0.07 0.77 5.91 -13.45 -0.08 0.69 16 20 N -0.47 -6.00 10.53 -11.86 -0.12 -6.12 16 21 C 0.04 0.43 11.35 -19.19 -0.22 0.21 16 22 C -0.27 -2.28 11.37 29.12 0.33 -1.95 16 23 S 0.12 1.09 23.17 -107.50 -2.49 -1.40 16 24 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.40 5.70 7.09 -40.82 -0.29 5.41 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 0.74 7.19 -51.93 -0.37 0.36 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -32.64 310.47 -7.51 -40.15 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.66 Total: 2.12 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.29 Total: -4.09 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.19 Total: -43.96 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.09 Total: -14.52 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.64 -7.51 -40.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597500484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.696 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds