Wall clock time and date at job start Mon Mar 30 2020 04:37:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.32306 * 119.94972 * 2 1
4 4 C 1.32458 * 120.16132 * 179.97438 * 3 2 1
5 5 Cl 1.73600 * 119.97275 * 179.97438 * 4 3 2
6 6 N 1.32221 * 120.05511 * 359.97438 * 4 3 2
7 7 C 1.32980 * 119.89582 * 359.97438 * 6 4 3
8 8 N 1.37980 * 120.08016 * 180.02562 * 7 6 4
9 9 C 1.46500 * 120.00122 * 174.87352 * 8 7 6
10 10 C 1.50703 * 109.47404 * 89.99980 * 9 8 7
11 11 H 1.07998 * 119.99768 * 359.97438 * 10 9 8
12 12 C 1.37877 * 120.00117 * 180.02562 * 10 9 8
13 13 N 1.31514 * 119.99858 * 0.02562 * 12 10 9
14 14 Si 1.86801 * 119.99938 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.46594 * 90.00144 * 14 12 10
16 16 H 1.48498 * 109.46954 * 209.99874 * 14 12 10
17 17 H 1.48497 * 109.47205 * 330.00614 * 14 12 10
18 18 C 1.46497 * 120.00133 * 354.87432 * 8 7 6
19 19 C 1.53002 * 117.50071 * 193.67022 * 18 8 7
20 20 C 1.53001 * 117.50433 * 125.01165 * 18 8 7
21 21 N 1.32071 * 119.94741 * 179.97438 * 2 1 3
22 22 H 1.09006 * 109.46746 * 90.00700 * 1 2 3
23 23 H 1.09000 * 109.47131 * 210.00192 * 1 2 3
24 24 H 1.08998 * 109.47268 * 330.00486 * 1 2 3
25 25 H 1.09001 * 109.47489 * 210.00036 * 9 8 7
26 26 H 1.09002 * 109.46994 * 329.99662 * 9 8 7
27 27 H 0.97005 * 119.99774 * 180.02562 * 13 12 10
28 28 H 1.09001 * 115.55034 * 339.33731 * 18 8 7
29 29 H 1.08999 * 117.49826 * 359.97438 * 19 18 8
30 30 H 1.08999 * 117.49975 * 145.01392 * 19 18 8
31 31 H 1.08996 * 117.50002 * 214.97840 * 20 18 8
32 32 H 1.09004 * 117.49171 * 359.97438 * 20 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1675 1.1464 0.0000
4 6 3.4921 1.1513 0.0005
5 17 4.3538 2.6583 -0.0002
6 7 4.1585 0.0093 0.0015
7 6 3.4969 -1.1442 0.0026
8 7 4.1885 -2.3382 0.0042
9 6 3.4622 -3.6053 0.1187
10 6 3.1038 -4.1051 -1.2572
11 1 3.3882 -3.5355 -2.1296
12 6 2.4119 -5.2888 -1.4021
13 7 2.0643 -5.9816 -0.3396
14 14 1.9671 -5.9079 -3.1075
15 1 3.0601 -6.7721 -3.6209
16 1 0.7079 -6.6919 -3.0366
17 1 1.7798 -4.7518 -4.0205
18 6 5.6491 -2.3388 -0.1086
19 6 6.3330 -3.6711 -0.4220
20 6 6.4415 -3.0658 0.9797
21 7 2.1663 -1.1444 0.0005
22 1 -0.3633 -0.0001 -1.0277
23 1 -0.3633 -0.8900 0.5139
24 1 -0.3634 0.8900 0.5137
25 1 4.0914 -4.3408 0.6199
26 1 2.5517 -3.4511 0.6979
27 1 1.5778 -6.8146 -0.4416
28 1 6.0883 -1.4357 -0.5325
29 1 5.6961 -4.5472 -0.5439
30 1 7.2221 -3.6445 -1.0519
31 1 7.4021 -2.6413 1.2715
32 1 5.8760 -3.5434 1.7799
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000694806819.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:37:45
Heat of formation + Delta-G solvation = 96.140771 kcal
Electronic energy + Delta-G solvation = -18154.906594 eV
Core-core repulsion = 15178.281707 eV
Total energy + Delta-G solvation = -2976.624887 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 268.079 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.16419 -38.02936 -36.85218 -34.61615 -33.89345 -32.91550 -31.28787 -29.14471
-27.51240 -24.23968 -23.17340 -22.80101 -21.90286 -19.85570 -18.37243 -17.45532
-16.53350 -15.88370 -15.55119 -14.87414 -14.23738 -13.95814 -13.70265 -13.34983
-13.17170 -12.94565 -12.31504 -12.21856 -11.91339 -11.51629 -11.39188 -11.25013
-10.99341 -10.86399 -10.68367 -10.22320 -10.14357 -10.05292 -9.99178 -9.59358
-9.31599 -9.04462 -8.54589 -7.45602 -6.15606 -4.21056 1.21342 1.48488
1.51071 3.13250 3.23342 3.30509 3.35718 4.06425 4.10514 4.31615
4.46323 4.63784 4.91063 5.18368 5.28429 5.39025 5.45973 5.71543
5.73782 5.80876 6.01215 6.11787 6.34236 6.50382 6.63944 6.71387
6.92923 7.03286 7.25329 7.65339 7.82333 7.97161 8.05550 8.71988
8.85571 9.43562 10.91460
Molecular weight = 268.08amu
Principal moments of inertia in cm(-1)
A = 0.018225 B = 0.006702 C = 0.005406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1536.008729 B = 4176.896857 C = 5178.127766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 C 0.405 3.595
3 N -0.606 5.606
4 C 0.443 3.557
5 Cl 0.015 6.985
6 N -0.607 5.607
7 C 0.616 3.384
8 N -0.511 5.511
9 C 0.251 3.749
10 C -0.521 4.521
11 H 0.057 0.943
12 C 0.066 3.934
13 N -0.893 5.893
14 Si 0.898 3.102
15 H -0.280 1.280
16 H -0.285 1.285
17 H -0.275 1.275
18 C 0.091 3.909
19 C -0.175 4.175
20 C -0.197 4.197
21 N -0.570 5.570
22 H 0.091 0.909
23 H 0.093 0.907
24 H 0.087 0.913
25 H 0.042 0.958
26 H 0.052 0.948
27 H 0.265 0.735
28 H 0.128 0.872
29 H 0.120 0.880
30 H 0.095 0.905
31 H 0.095 0.905
32 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.039 10.247 1.718 10.825
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.128 3.872
3 N -0.339 5.339
4 C 0.137 3.863
5 Cl 0.042 6.958
6 N -0.343 5.343
7 C 0.255 3.745
8 N -0.220 5.220
9 C 0.133 3.867
10 C -0.560 4.560
11 H 0.076 0.924
12 C -0.137 4.137
13 N -0.531 5.531
14 Si 0.726 3.274
15 H -0.206 1.206
16 H -0.210 1.210
17 H -0.200 1.200
18 C -0.015 4.015
19 C -0.213 4.213
20 C -0.236 4.236
21 N -0.299 5.299
22 H 0.109 0.891
23 H 0.111 0.889
24 H 0.106 0.894
25 H 0.059 0.941
26 H 0.070 0.930
27 H 0.074 0.926
28 H 0.145 0.855
29 H 0.138 0.862
30 H 0.113 0.887
31 H 0.113 0.887
32 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 3.131 9.875 1.781 10.512
hybrid contribution -0.038 -0.243 -0.967 0.998
sum 3.093 9.633 0.813 10.150
Atomic orbital electron populations
1.20598 0.84761 1.04351 1.04318 1.23385 0.98015 0.81725 0.84067
1.68310 1.07541 1.31998 1.26013 1.22652 0.86506 0.87948 0.89191
1.98406 1.75107 1.26324 1.95950 1.67918 1.41829 0.97366 1.27139
1.19194 0.85007 0.85450 0.84892 1.46527 1.04418 1.03252 1.67774
1.19559 0.92121 0.76725 0.98312 1.21294 1.36467 1.06262 0.92020
0.92441 1.24874 0.95342 0.96422 0.97063 1.69920 1.39257 1.15415
1.28540 0.86496 0.77992 0.78796 0.84160 1.20578 1.21018 1.19970
1.21511 0.79021 0.97608 1.03326 1.23451 1.02231 0.98154 0.97480
1.23393 1.01643 1.05113 0.93446 1.68688 1.07468 1.30341 1.23420
0.89068 0.88863 0.89436 0.94060 0.93043 0.92567 0.85455 0.86167
0.88663 0.88701 0.88710
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.10 10.37 36.00 0.37 -0.73 16
2 C 0.40 7.43 7.69 -156.52 -1.20 6.23 16
3 N -0.61 -10.98 10.41 -9.17 -0.10 -11.07 16
4 C 0.44 8.07 8.25 -91.21 -0.75 7.31 16
5 Cl 0.01 0.21 29.30 -51.86 -1.52 -1.31 16
6 N -0.61 -12.06 9.36 -12.39 -0.12 -12.17 16
7 C 0.62 13.37 8.17 -322.06 -2.63 10.74 16
8 N -0.51 -11.08 2.89 -169.64 -0.49 -11.57 16
9 C 0.25 6.15 4.40 -5.19 -0.02 6.13 16
10 C -0.52 -13.83 8.91 -34.44 -0.31 -14.14 16
11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16
12 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16
13 N -0.89 -24.86 13.29 55.43 0.74 -24.13 16
14 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16
15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
18 C 0.09 1.66 6.28 -67.93 -0.43 1.23 16
19 C -0.18 -2.94 9.73 -26.70 -0.26 -3.20 16
20 C -0.20 -3.09 10.02 -26.70 -0.27 -3.36 16
21 N -0.57 -12.34 9.25 -11.49 -0.11 -12.44 16
22 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16
23 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16
24 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16
25 H 0.04 1.03 6.25 -51.93 -0.32 0.71 16
26 H 0.05 1.38 7.45 -51.93 -0.39 1.00 16
27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
28 H 0.13 2.22 7.57 -51.93 -0.39 1.83 16
29 H 0.12 2.37 6.29 -51.93 -0.33 2.05 16
30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16
31 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16
32 H 0.09 1.58 7.82 -51.93 -0.41 1.18 16
LS Contribution 296.87 15.07 4.47 4.47
Total: -1.00 -29.06 296.87 -11.23 -40.29
By element:
Atomic # 1 Polarization: 3.61 SS G_CDS: -3.50 Total: 0.12 kcal
Atomic # 6 Polarization: 17.48 SS G_CDS: -5.60 Total: 11.88 kcal
Atomic # 7 Polarization: -71.31 SS G_CDS: -0.07 Total: -71.38 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal
Atomic # 17 Polarization: 0.21 SS G_CDS: -1.52 Total: -1.31 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -29.06 -11.23 -40.29 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000694806819.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.429 kcal
(2) G-P(sol) polarization free energy of solvation -29.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.232 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal
(6) G-S(sol) free energy of system = (1) + (5) 96.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds