Wall clock time and date at job start Mon Mar 30 2020 04:37:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.32306 * 119.94972 * 2 1
4 4 C 1.32458 * 120.16132 * 179.97438 * 3 2 1
5 5 Cl 1.73600 * 119.97275 * 179.97438 * 4 3 2
6 6 N 1.32221 * 120.05511 * 359.97438 * 4 3 2
7 7 C 1.32980 * 119.89582 * 359.97438 * 6 4 3
8 8 N 1.37980 * 120.08016 * 180.02562 * 7 6 4
9 9 C 1.46500 * 120.00122 * 174.87352 * 8 7 6
10 10 C 1.50703 * 109.47404 * 89.99980 * 9 8 7
11 11 H 1.07998 * 119.99768 * 359.97438 * 10 9 8
12 12 C 1.37877 * 120.00117 * 180.02562 * 10 9 8
13 13 N 1.31514 * 119.99858 * 0.02562 * 12 10 9
14 14 Si 1.86801 * 119.99938 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.46594 * 90.00144 * 14 12 10
16 16 H 1.48498 * 109.46954 * 209.99874 * 14 12 10
17 17 H 1.48497 * 109.47205 * 330.00614 * 14 12 10
18 18 C 1.46497 * 120.00133 * 354.87432 * 8 7 6
19 19 C 1.53002 * 117.50071 * 193.67022 * 18 8 7
20 20 C 1.53001 * 117.50433 * 125.01165 * 18 8 7
21 21 N 1.32071 * 119.94741 * 179.97438 * 2 1 3
22 22 H 1.09006 * 109.46746 * 90.00700 * 1 2 3
23 23 H 1.09000 * 109.47131 * 210.00192 * 1 2 3
24 24 H 1.08998 * 109.47268 * 330.00486 * 1 2 3
25 25 H 1.09001 * 109.47489 * 210.00036 * 9 8 7
26 26 H 1.09002 * 109.46994 * 329.99662 * 9 8 7
27 27 H 0.97005 * 119.99774 * 180.02562 * 13 12 10
28 28 H 1.09001 * 115.55034 * 339.33731 * 18 8 7
29 29 H 1.08999 * 117.49826 * 359.97438 * 19 18 8
30 30 H 1.08999 * 117.49975 * 145.01392 * 19 18 8
31 31 H 1.08996 * 117.50002 * 214.97840 * 20 18 8
32 32 H 1.09004 * 117.49171 * 359.97438 * 20 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1675 1.1464 0.0000
4 6 3.4921 1.1513 0.0005
5 17 4.3538 2.6583 -0.0002
6 7 4.1585 0.0093 0.0015
7 6 3.4969 -1.1442 0.0026
8 7 4.1885 -2.3382 0.0042
9 6 3.4622 -3.6053 0.1187
10 6 3.1038 -4.1051 -1.2572
11 1 3.3882 -3.5355 -2.1296
12 6 2.4119 -5.2888 -1.4021
13 7 2.0643 -5.9816 -0.3396
14 14 1.9671 -5.9079 -3.1075
15 1 3.0601 -6.7721 -3.6209
16 1 0.7079 -6.6919 -3.0366
17 1 1.7798 -4.7518 -4.0205
18 6 5.6491 -2.3388 -0.1086
19 6 6.3330 -3.6711 -0.4220
20 6 6.4415 -3.0658 0.9797
21 7 2.1663 -1.1444 0.0005
22 1 -0.3633 -0.0001 -1.0277
23 1 -0.3633 -0.8900 0.5139
24 1 -0.3634 0.8900 0.5137
25 1 4.0914 -4.3408 0.6199
26 1 2.5517 -3.4511 0.6979
27 1 1.5778 -6.8146 -0.4416
28 1 6.0883 -1.4357 -0.5325
29 1 5.6961 -4.5472 -0.5439
30 1 7.2221 -3.6445 -1.0519
31 1 7.4021 -2.6413 1.2715
32 1 5.8760 -3.5434 1.7799
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000694806819.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:37:45
Heat of formation + Delta-G solvation = 82.392724 kcal
Electronic energy + Delta-G solvation = -18155.502754 eV
Core-core repulsion = 15178.281707 eV
Total energy + Delta-G solvation = -2977.221047 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 268.079 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-42.64755 -39.52810 -38.15691 -36.06035 -35.46194 -34.78380 -32.92960 -30.40129
-29.40117 -25.94264 -24.64797 -24.46168 -23.21159 -21.37975 -19.85410 -19.04522
-18.51367 -17.31166 -17.07061 -16.70057 -15.74945 -15.48569 -15.21450 -14.80675
-14.60622 -14.28554 -13.94776 -13.46860 -13.39358 -13.26246 -12.89247 -12.65170
-12.61224 -12.50434 -12.28172 -12.15582 -11.61065 -11.48646 -11.43350 -11.35188
-10.79877 -10.65430 -10.54407 -9.08584 -8.19763 -6.33781 -0.23502 -0.00972
0.11830 1.38257 1.39805 1.48918 1.61608 2.38343 2.62842 2.70961
3.04450 3.09448 3.14890 3.55938 3.87013 4.05570 4.13471 4.45811
4.66352 4.70281 4.77195 4.80798 4.99132 5.02119 5.19780 5.25103
5.32042 5.34571 5.53148 5.65677 6.00685 6.12085 6.32397 6.72246
7.24263 7.35739 8.85399
Molecular weight = 268.08amu
Principal moments of inertia in cm(-1)
A = 0.018225 B = 0.006702 C = 0.005406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1536.008729 B = 4176.896857 C = 5178.127766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.398 3.602
3 N -0.602 5.602
4 C 0.432 3.568
5 Cl 0.052 6.948
6 N -0.611 5.611
7 C 0.601 3.399
8 N -0.522 5.522
9 C 0.275 3.725
10 C -0.526 4.526
11 H 0.043 0.957
12 C 0.022 3.978
13 N -0.921 5.921
14 Si 0.959 3.041
15 H -0.270 1.270
16 H -0.279 1.279
17 H -0.278 1.278
18 C 0.068 3.932
19 C -0.172 4.172
20 C -0.174 4.174
21 N -0.609 5.609
22 H 0.107 0.893
23 H 0.091 0.909
24 H 0.115 0.885
25 H 0.031 0.969
26 H 0.020 0.980
27 H 0.268 0.732
28 H 0.137 0.863
29 H 0.086 0.914
30 H 0.127 0.873
31 H 0.131 0.869
32 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.530 11.345 1.100 11.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.123 3.877
3 N -0.334 5.334
4 C 0.127 3.873
5 Cl 0.079 6.921
6 N -0.346 5.346
7 C 0.239 3.761
8 N -0.232 5.232
9 C 0.155 3.845
10 C -0.565 4.565
11 H 0.061 0.939
12 C -0.178 4.178
13 N -0.561 5.561
14 Si 0.784 3.216
15 H -0.195 1.195
16 H -0.204 1.204
17 H -0.203 1.203
18 C -0.037 4.037
19 C -0.210 4.210
20 C -0.213 4.213
21 N -0.339 5.339
22 H 0.125 0.875
23 H 0.110 0.890
24 H 0.134 0.866
25 H 0.049 0.951
26 H 0.038 0.962
27 H 0.077 0.923
28 H 0.155 0.845
29 H 0.104 0.896
30 H 0.145 0.855
31 H 0.149 0.851
32 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 3.633 11.018 1.166 11.660
hybrid contribution -0.177 -0.447 -0.743 0.885
sum 3.456 10.571 0.423 11.129
Atomic orbital electron populations
1.20787 0.81570 1.05645 1.05621 1.24299 0.99813 0.81063 0.82522
1.68485 1.07474 1.31612 1.25836 1.23204 0.87005 0.88840 0.88243
1.98415 1.74377 1.23637 1.95634 1.67972 1.41660 0.97273 1.27710
1.19397 0.85425 0.86015 0.85279 1.46410 1.05664 1.02470 1.68655
1.18976 0.90898 0.77875 0.96745 1.21380 1.36493 1.06297 0.92311
0.93889 1.25597 0.95193 0.96557 1.00467 1.70014 1.39876 1.15829
1.30364 0.85551 0.78081 0.78120 0.79845 1.19493 1.20384 1.20306
1.21803 0.77458 0.98651 1.05749 1.23410 1.02500 0.95966 0.99120
1.23436 1.02259 1.03347 0.92239 1.68741 1.07903 1.32199 1.25099
0.87492 0.88983 0.86632 0.95099 0.96167 0.92321 0.84506 0.89567
0.85534 0.85082 0.90185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.99 10.37 71.24 0.74 -1.25 16
2 C 0.40 14.43 7.69 138.51 1.07 15.50 16
3 N -0.60 -21.11 10.41 -182.94 -1.91 -23.02 16
4 C 0.43 15.27 8.25 180.56 1.49 16.76 16
5 Cl 0.05 1.39 29.30 -2.72 -0.08 1.31 16
6 N -0.61 -24.00 9.36 -193.10 -1.81 -25.81 16
7 C 0.60 26.45 8.17 261.23 2.14 28.58 16
8 N -0.52 -23.17 2.89 -690.61 -2.00 -25.16 16
9 C 0.28 13.99 4.40 85.63 0.38 14.37 16
10 C -0.53 -28.61 8.91 25.60 0.23 -28.38 16
11 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16
12 C 0.02 1.18 5.46 84.65 0.46 1.64 16
13 N -0.92 -52.20 13.29 21.45 0.28 -51.92 16
14 Si 0.96 43.15 29.54 68.60 2.03 45.18 16
15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16
17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
18 C 0.07 2.45 6.28 44.99 0.28 2.73 16
19 C -0.17 -5.67 9.73 30.62 0.30 -5.37 16
20 C -0.17 -5.25 10.02 30.62 0.31 -4.94 16
21 N -0.61 -26.81 9.25 -190.26 -1.76 -28.57 16
22 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16
23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16
24 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16
25 H 0.03 1.62 6.25 -2.39 -0.01 1.61 16
26 H 0.02 1.15 7.45 -2.39 -0.02 1.13 16
27 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16
28 H 0.14 4.63 7.57 -2.39 -0.02 4.61 16
29 H 0.09 3.48 6.29 -2.39 -0.02 3.47 16
30 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16
31 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16
32 H 0.08 2.66 7.82 -2.38 -0.02 2.65 16
Total: -1.00 -63.24 296.87 3.29 -59.94
By element:
Atomic # 1 Polarization: 7.26 SS G_CDS: 1.15 Total: 8.40 kcal
Atomic # 6 Polarization: 32.26 SS G_CDS: 7.38 Total: 39.64 kcal
Atomic # 7 Polarization: -147.29 SS G_CDS: -7.18 Total: -154.47 kcal
Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal
Atomic # 17 Polarization: 1.39 SS G_CDS: -0.08 Total: 1.31 kcal
Total: -63.24 3.29 -59.94 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000694806819.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 142.336 kcal
(2) G-P(sol) polarization free energy of solvation -63.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.393 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds