Wall clock time and date at job start Mon Mar 30 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.54034 * 2 1 4 4 C 1.53094 * 109.50697 * 239.89698 * 2 1 3 5 5 N 1.47015 * 109.25521 * 296.91300 * 4 2 1 6 6 C 1.46900 * 111.00114 * 177.61009 * 5 4 2 7 7 C 1.47016 * 110.75403 * 301.38239 * 5 4 2 8 8 C 1.53102 * 109.25750 * 58.61354 * 7 5 4 9 9 H 1.09010 * 109.50332 * 63.13128 * 8 7 5 10 10 C 1.50695 * 109.50801 * 183.21523 * 8 7 5 11 11 N 1.28795 * 124.99676 * 254.72216 * 10 8 7 12 12 C 1.33648 * 116.06603 * 179.85269 * 11 10 8 13 13 C 1.41154 * 122.86690 * 180.20581 * 12 11 10 14 14 H 1.08000 * 120.00043 * 172.16020 * 13 12 11 15 15 C 1.39724 * 119.99720 * 352.15922 * 13 12 11 16 16 N 1.31025 * 119.99633 * 169.92226 * 15 13 12 17 17 Si 1.86799 * 120.00249 * 349.92766 * 15 13 12 18 18 H 1.48501 * 109.47213 * 84.86215 * 17 15 13 19 19 H 1.48496 * 109.46819 * 204.86331 * 17 15 13 20 20 H 1.48497 * 109.47201 * 324.86452 * 17 15 13 21 21 C 1.37702 * 114.26874 * 0.43640 * 12 11 10 22 22 S 1.70993 * 108.84070 * 359.77099 * 21 12 11 23 23 O 1.43011 * 109.26004 * 303.15923 * 8 7 5 24 24 H 1.09006 * 109.46846 * 299.88812 * 1 2 3 25 25 H 1.08997 * 109.47234 * 59.88854 * 1 2 3 26 26 H 1.08993 * 109.47564 * 179.89237 * 1 2 3 27 27 H 1.08997 * 109.50984 * 56.84410 * 4 2 1 28 28 H 1.08997 * 109.50740 * 176.93386 * 4 2 1 29 29 H 1.08999 * 109.47229 * 179.68340 * 6 5 4 30 30 H 1.09000 * 109.46854 * 299.68042 * 6 5 4 31 31 H 1.08991 * 109.47359 * 59.67762 * 6 5 4 32 32 H 1.08998 * 109.50554 * 298.68218 * 7 5 4 33 33 H 1.09000 * 109.50769 * 178.54604 * 7 5 4 34 34 H 0.96998 * 119.99591 * 180.02562 * 16 15 13 35 35 H 1.07999 * 125.57925 * 179.75215 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2484 5 7 1.6109 -2.1289 -1.2045 6 6 2.0335 -2.8469 -2.4144 7 6 2.1185 -2.7916 0.0056 8 6 1.6066 -2.0470 1.2415 9 1 0.5188 -2.1071 1.2781 10 6 2.1872 -2.6736 2.4830 11 7 1.5401 -3.4296 3.3006 12 6 2.2328 -3.8929 4.3455 13 6 1.6673 -4.7355 5.3266 14 1 2.2968 -5.1852 6.0802 15 6 0.2930 -4.9878 5.3228 16 7 -0.2046 -5.9168 6.1014 17 14 -0.8348 -4.0010 4.2077 18 1 -0.8590 -4.6179 2.8571 19 1 -2.2077 -3.9939 4.7734 20 1 -0.3340 -2.6067 4.1060 21 6 3.5439 -3.4740 4.3860 22 16 3.8461 -2.4739 3.0323 23 8 2.0075 -0.6763 1.1661 24 1 -0.3633 0.5121 0.8910 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3634 -1.0276 -0.0019 27 1 1.6331 -0.2459 -2.1390 28 1 3.1298 -0.6765 -1.2764 29 1 1.7073 -3.8851 -2.3534 30 1 1.5870 -2.3767 -3.2906 31 1 3.1197 -2.8116 -2.4971 32 1 3.2084 -2.7780 -0.0019 33 1 1.7668 -3.8230 0.0305 34 1 -1.1586 -6.0922 6.0985 35 1 4.2635 -3.7342 5.1481 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700368116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:27 Heat of formation + Delta-G solvation = -4.432842 kcal Electronic energy + Delta-G solvation = -18837.652041 eV Core-core repulsion = 15962.250005 eV Total energy + Delta-G solvation = -2875.402037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99414 -38.19697 -35.74593 -33.49241 -32.58539 -30.32632 -28.62090 -27.12826 -26.09569 -24.93668 -23.14882 -21.53816 -19.58306 -19.08493 -17.96987 -16.63729 -16.20749 -15.42508 -15.22149 -15.21001 -14.92589 -14.54850 -13.82558 -13.49431 -13.16221 -12.89207 -12.70853 -12.24900 -12.15116 -11.95937 -11.78207 -11.77479 -11.38374 -11.26998 -10.93680 -10.65736 -10.40619 -10.32607 -9.87964 -9.60468 -9.26765 -8.50959 -8.34723 -8.09029 -7.64588 -6.81951 -4.46558 1.84378 2.53858 3.31076 3.37118 3.43702 3.58594 3.67874 3.72923 4.05351 4.33735 4.73591 4.76926 4.91638 5.00180 5.21314 5.28138 5.31142 5.32511 5.38462 5.47779 5.50123 5.68965 5.72239 5.89233 5.95389 6.01093 6.33085 6.38627 6.80486 6.83274 6.91389 7.00032 7.25378 7.41605 8.19845 8.46505 8.56381 9.12335 10.17068 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.007022 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.016386 B = 3986.784280 C = 4461.650566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 H 0.108 0.892 4 C 0.022 3.978 5 N -0.539 5.539 6 C 0.026 3.974 7 C 0.031 3.969 8 C 0.176 3.824 9 H 0.091 0.909 10 C 0.066 3.934 11 N -0.469 5.469 12 C 0.205 3.795 13 C -0.414 4.414 14 H 0.096 0.904 15 C 0.082 3.918 16 N -0.816 5.816 17 Si 0.972 3.028 18 H -0.274 1.274 19 H -0.319 1.319 20 H -0.258 1.258 21 C -0.443 4.443 22 S 0.050 5.950 23 O -0.367 6.367 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.285 0.715 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 9.171 -15.528 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.032 3.968 3 H 0.125 0.875 4 C -0.106 4.106 5 N -0.264 5.264 6 C -0.122 4.122 7 C -0.098 4.098 8 C 0.114 3.886 9 H 0.108 0.892 10 C -0.215 4.215 11 N -0.190 5.190 12 C 0.084 3.916 13 C -0.448 4.448 14 H 0.114 0.886 15 C -0.138 4.138 16 N -0.440 5.440 17 Si 0.804 3.196 18 H -0.200 1.200 19 H -0.250 1.250 20 H -0.184 1.184 21 C -0.583 4.583 22 S 0.299 5.701 23 O -0.286 6.286 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.605 9.462 -15.645 18.354 hybrid contribution -0.079 -0.497 0.200 0.542 sum 1.525 8.965 -15.445 17.923 Atomic orbital electron populations 1.22315 0.95507 1.03718 1.02045 1.22279 0.94556 0.95881 0.84117 0.87475 1.22832 0.98772 0.89575 0.99465 1.62175 1.59649 1.02105 1.02434 1.22367 0.98339 0.99411 0.92088 1.22786 0.98731 0.99247 0.89015 1.20135 0.98748 0.81110 0.88608 0.89150 1.26598 0.93930 1.01834 0.99096 1.66083 1.35248 1.12969 1.04714 1.18032 0.88715 0.94220 0.90663 1.18792 0.93280 1.22710 1.09994 0.88630 1.26206 0.99492 0.93472 0.94647 1.69733 1.15456 1.25405 1.33452 0.85122 0.73846 0.81898 0.78717 1.20030 1.25012 1.18373 1.25145 1.02378 1.21193 1.09555 1.82694 1.13970 1.50874 1.22573 1.88110 1.75331 1.22360 1.42754 0.92062 0.91782 0.90888 0.89641 0.93775 0.91049 0.91231 0.95451 0.93141 0.88944 0.90512 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.88 37.16 0.33 -1.78 16 2 C 0.09 1.11 3.92 -26.68 -0.10 1.00 16 3 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.02 0.24 5.08 -3.71 -0.02 0.22 16 5 N -0.54 -6.78 4.35 -242.60 -1.06 -7.84 16 6 C 0.03 0.26 9.61 60.06 0.58 0.84 16 7 C 0.03 0.48 4.93 -3.71 -0.02 0.46 16 8 C 0.18 3.19 2.94 -27.83 -0.08 3.11 16 9 H 0.09 1.71 6.50 -51.92 -0.34 1.37 16 10 C 0.07 1.45 6.51 -13.55 -0.09 1.36 16 11 N -0.47 -12.00 5.38 -8.36 -0.04 -12.05 16 12 C 0.20 5.54 6.21 -86.16 -0.53 5.01 16 13 C -0.41 -11.89 9.79 -37.92 -0.37 -12.27 16 14 H 0.10 2.83 8.06 -52.49 -0.42 2.40 16 15 C 0.08 2.28 5.51 -17.34 -0.10 2.19 16 16 N -0.82 -22.85 13.94 55.54 0.77 -22.07 16 17 Si 0.97 24.29 25.64 -169.99 -4.36 19.93 16 18 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.32 -7.68 7.11 56.52 0.40 -7.28 16 20 H -0.26 -6.64 6.43 56.52 0.36 -6.27 16 21 C -0.44 -10.97 10.98 30.54 0.34 -10.63 16 22 S 0.05 1.06 23.03 -107.50 -2.48 -1.42 16 23 O -0.37 -6.19 10.16 -35.23 -0.36 -6.54 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.99 6.13 -51.93 -0.32 0.67 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.28 7.28 8.30 -40.82 -0.34 6.94 16 35 H 0.15 3.46 8.06 -52.49 -0.42 3.04 16 LS Contribution 295.95 15.07 4.46 4.46 Total: -1.00 -30.29 295.95 -8.03 -38.32 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.90 Total: -2.32 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.07 Total: -10.48 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.33 Total: -41.96 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.36 Total: -6.54 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.36 Total: 19.93 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.48 Total: -1.42 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.29 -8.03 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700368116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.891 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds