Wall clock time and date at job start Mon Mar 30 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.54034 * 2 1 4 4 C 1.53094 * 109.50697 * 239.89698 * 2 1 3 5 5 N 1.47015 * 109.25521 * 296.91300 * 4 2 1 6 6 C 1.46900 * 111.00114 * 177.61009 * 5 4 2 7 7 C 1.47016 * 110.75403 * 301.38239 * 5 4 2 8 8 C 1.53102 * 109.25750 * 58.61354 * 7 5 4 9 9 H 1.09010 * 109.50332 * 63.13128 * 8 7 5 10 10 C 1.50695 * 109.50801 * 183.21523 * 8 7 5 11 11 N 1.28795 * 124.99676 * 254.72216 * 10 8 7 12 12 C 1.33648 * 116.06603 * 179.85269 * 11 10 8 13 13 C 1.41154 * 122.86690 * 180.20581 * 12 11 10 14 14 H 1.08000 * 120.00043 * 172.16020 * 13 12 11 15 15 C 1.39724 * 119.99720 * 352.15922 * 13 12 11 16 16 N 1.31025 * 119.99633 * 169.92226 * 15 13 12 17 17 Si 1.86799 * 120.00249 * 349.92766 * 15 13 12 18 18 H 1.48501 * 109.47213 * 84.86215 * 17 15 13 19 19 H 1.48496 * 109.46819 * 204.86331 * 17 15 13 20 20 H 1.48497 * 109.47201 * 324.86452 * 17 15 13 21 21 C 1.37702 * 114.26874 * 0.43640 * 12 11 10 22 22 S 1.70993 * 108.84070 * 359.77099 * 21 12 11 23 23 O 1.43011 * 109.26004 * 303.15923 * 8 7 5 24 24 H 1.09006 * 109.46846 * 299.88812 * 1 2 3 25 25 H 1.08997 * 109.47234 * 59.88854 * 1 2 3 26 26 H 1.08993 * 109.47564 * 179.89237 * 1 2 3 27 27 H 1.08997 * 109.50984 * 56.84410 * 4 2 1 28 28 H 1.08997 * 109.50740 * 176.93386 * 4 2 1 29 29 H 1.08999 * 109.47229 * 179.68340 * 6 5 4 30 30 H 1.09000 * 109.46854 * 299.68042 * 6 5 4 31 31 H 1.08991 * 109.47359 * 59.67762 * 6 5 4 32 32 H 1.08998 * 109.50554 * 298.68218 * 7 5 4 33 33 H 1.09000 * 109.50769 * 178.54604 * 7 5 4 34 34 H 0.96998 * 119.99591 * 180.02562 * 16 15 13 35 35 H 1.07999 * 125.57925 * 179.75215 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2484 5 7 1.6109 -2.1289 -1.2045 6 6 2.0335 -2.8469 -2.4144 7 6 2.1185 -2.7916 0.0056 8 6 1.6066 -2.0470 1.2415 9 1 0.5188 -2.1071 1.2781 10 6 2.1872 -2.6736 2.4830 11 7 1.5401 -3.4296 3.3006 12 6 2.2328 -3.8929 4.3455 13 6 1.6673 -4.7355 5.3266 14 1 2.2968 -5.1852 6.0802 15 6 0.2930 -4.9878 5.3228 16 7 -0.2046 -5.9168 6.1014 17 14 -0.8348 -4.0010 4.2077 18 1 -0.8590 -4.6179 2.8571 19 1 -2.2077 -3.9939 4.7734 20 1 -0.3340 -2.6067 4.1060 21 6 3.5439 -3.4740 4.3860 22 16 3.8461 -2.4739 3.0323 23 8 2.0075 -0.6763 1.1661 24 1 -0.3633 0.5121 0.8910 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3634 -1.0276 -0.0019 27 1 1.6331 -0.2459 -2.1390 28 1 3.1298 -0.6765 -1.2764 29 1 1.7073 -3.8851 -2.3534 30 1 1.5870 -2.3767 -3.2906 31 1 3.1197 -2.8116 -2.4971 32 1 3.2084 -2.7780 -0.0019 33 1 1.7668 -3.8230 0.0305 34 1 -1.1586 -6.0922 6.0985 35 1 4.2635 -3.7342 5.1481 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700368116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:27 Heat of formation + Delta-G solvation = -25.553193 kcal Electronic energy + Delta-G solvation = -18838.567888 eV Core-core repulsion = 15962.250005 eV Total energy + Delta-G solvation = -2876.317884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18410 -40.03852 -36.78910 -35.44129 -33.94520 -31.80097 -30.10443 -28.14316 -27.96503 -26.29044 -24.12214 -23.17938 -21.03332 -20.80785 -19.73304 -18.01503 -17.44106 -17.18254 -16.84805 -16.48288 -16.15895 -15.66357 -15.07430 -14.93984 -14.79936 -14.72553 -14.03472 -13.82191 -13.48275 -13.10842 -13.03584 -12.87183 -12.75003 -12.70549 -12.46338 -12.36451 -12.20858 -11.83295 -11.44028 -11.36094 -10.75665 -10.24195 -9.98084 -9.57609 -9.41486 -8.91093 -6.58455 0.00720 0.74684 1.31566 1.38122 1.47061 1.60006 1.93337 2.31170 2.44780 2.78603 3.17463 3.53763 3.69803 3.85572 3.95799 4.14680 4.16538 4.38773 4.54009 4.54567 4.59212 4.65601 4.72442 4.81384 4.91874 4.93338 5.00695 5.01886 5.07649 5.37380 5.38735 5.82201 5.96243 5.97873 6.09011 6.39635 6.52348 7.13538 8.13573 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.007022 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.016386 B = 3986.784280 C = 4461.650566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 H 0.134 0.866 4 C 0.024 3.976 5 N -0.546 5.546 6 C 0.026 3.974 7 C 0.040 3.960 8 C 0.179 3.821 9 H 0.080 0.920 10 C 0.064 3.936 11 N -0.503 5.503 12 C 0.187 3.813 13 C -0.451 4.451 14 H 0.068 0.932 15 C 0.050 3.950 16 N -0.848 5.848 17 Si 1.025 2.975 18 H -0.274 1.274 19 H -0.306 1.306 20 H -0.271 1.271 21 C -0.454 4.454 22 S 0.128 5.872 23 O -0.386 6.386 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.117 0.883 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.294 0.706 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 11.300 -18.590 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.023 3.977 3 H 0.152 0.848 4 C -0.104 4.104 5 N -0.271 5.271 6 C -0.122 4.122 7 C -0.089 4.089 8 C 0.117 3.883 9 H 0.098 0.902 10 C -0.216 4.216 11 N -0.224 5.224 12 C 0.065 3.935 13 C -0.486 4.486 14 H 0.086 0.914 15 C -0.166 4.166 16 N -0.475 5.475 17 Si 0.856 3.144 18 H -0.200 1.200 19 H -0.236 1.236 20 H -0.198 1.198 21 C -0.593 4.593 22 S 0.379 5.621 23 O -0.305 6.305 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.135 0.865 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.987 11.602 -18.726 22.118 hybrid contribution 0.003 -1.002 1.034 1.440 sum 1.990 10.600 -17.691 20.720 Atomic orbital electron populations 1.22283 0.95212 1.02679 1.03035 1.22696 0.94945 0.96838 0.83235 0.84806 1.22905 0.99066 0.88504 0.99875 1.62184 1.59842 1.03020 1.02062 1.22447 0.98880 0.99338 0.91520 1.22580 0.98438 0.98598 0.89329 1.20074 0.97957 0.82387 0.87880 0.90195 1.27429 0.94616 1.00154 0.99363 1.66032 1.36052 1.15040 1.05308 1.18108 0.89702 0.94552 0.91107 1.18781 0.93848 1.24913 1.11033 0.91386 1.26777 1.00151 0.94060 0.95635 1.69743 1.16325 1.26570 1.34887 0.84316 0.72893 0.79879 0.77315 1.19967 1.23620 1.19782 1.25561 1.01925 1.20810 1.11042 1.82331 1.12374 1.48154 1.19260 1.88058 1.75760 1.21425 1.45301 0.93009 0.88890 0.92879 0.86513 0.93510 0.91313 0.88941 0.94903 0.93212 0.89904 0.89572 0.83199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 8.88 71.98 0.64 -2.99 16 2 C 0.08 1.69 3.92 30.63 0.12 1.81 16 3 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.02 0.43 5.08 86.31 0.44 0.87 16 5 N -0.55 -12.05 4.35 -921.45 -4.01 -16.06 16 6 C 0.03 0.42 9.61 127.69 1.23 1.65 16 7 C 0.04 1.15 4.93 86.32 0.43 1.58 16 8 C 0.18 6.23 2.94 29.88 0.09 6.32 16 9 H 0.08 2.97 6.50 -2.38 -0.02 2.95 16 10 C 0.06 2.76 6.51 88.55 0.58 3.34 16 11 N -0.50 -25.76 5.38 -180.35 -0.97 -26.73 16 12 C 0.19 10.33 6.21 39.46 0.24 10.57 16 13 C -0.45 -27.04 9.79 23.35 0.23 -26.82 16 14 H 0.07 4.28 8.06 -2.91 -0.02 4.26 16 15 C 0.05 2.87 5.51 85.17 0.47 3.34 16 16 N -0.85 -49.02 13.94 21.80 0.30 -48.72 16 17 Si 1.03 51.11 25.64 68.60 1.76 52.87 16 18 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.31 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.27 -13.96 6.43 99.48 0.64 -13.32 16 21 C -0.45 -22.40 10.98 67.69 0.74 -21.65 16 22 S 0.13 5.19 23.03 -56.49 -1.30 3.88 16 23 O -0.39 -12.07 10.16 -148.98 -1.51 -13.58 16 24 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.33 6.13 -2.39 -0.01 1.31 16 27 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.29 15.37 8.30 -92.71 -0.77 14.60 16 35 H 0.15 7.13 8.06 -2.91 -0.02 7.11 16 Total: -1.00 -66.70 295.95 0.48 -66.22 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.01 Total: 4.09 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.20 Total: -21.98 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -4.67 Total: -91.50 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.51 Total: -13.58 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.76 Total: 52.87 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.30 Total: 3.88 kcal Total: -66.70 0.48 -66.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700368116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.668 kcal (2) G-P(sol) polarization free energy of solvation -66.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds