Wall clock time and date at job start Mon Mar 30 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47199 * 109.44724 * 2 1 4 4 N 2.60805 * 109.44832 * 359.97438 * 2 1 3 5 5 C 1.53036 * 109.46209 * 240.03130 * 2 1 3 6 6 C 1.53187 * 109.33909 * 178.63045 * 5 2 1 7 7 N 1.46928 * 108.77623 * 54.61900 * 6 5 2 8 8 C 1.34777 * 120.63052 * 126.36901 * 7 6 5 9 9 O 1.21280 * 120.00172 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99915 * 179.97438 * 8 7 6 11 11 S 1.81004 * 109.47315 * 179.97438 * 10 8 7 12 12 C 1.76203 * 99.99945 * 180.02562 * 11 10 8 13 13 H 1.07995 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31638 * 119.99891 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 119.99873 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47489 * 59.99837 * 16 14 12 18 18 H 1.48503 * 109.47393 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47364 * 299.99554 * 16 14 12 20 20 C 1.46927 * 118.73615 * 306.39196 * 7 6 5 21 21 C 1.53042 * 109.48686 * 119.94235 * 2 1 3 22 22 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47188 * 299.96929 * 1 2 3 24 24 H 1.08996 * 109.47348 * 59.96742 * 1 2 3 25 25 H 1.09002 * 109.49886 * 58.66167 * 5 2 1 26 26 H 1.09000 * 109.49395 * 298.59644 * 5 2 1 27 27 H 1.09000 * 109.58836 * 174.40473 * 6 5 2 28 28 H 1.09005 * 109.59054 * 294.68564 * 6 5 2 29 29 H 1.09010 * 109.47401 * 300.00325 * 10 8 7 30 30 H 1.09002 * 109.47305 * 59.99565 * 10 8 7 31 31 H 0.97001 * 119.99751 * 180.02562 * 15 14 12 32 32 H 1.08999 * 109.58621 * 173.39948 * 20 7 6 33 33 H 1.09003 * 109.58297 * 293.67513 * 20 7 6 34 34 H 1.09003 * 109.46473 * 61.40247 * 21 2 1 35 35 H 1.09000 * 109.52301 * 301.34354 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0201 1.3880 0.0000 4 7 2.3984 2.4592 -0.0011 5 6 2.0399 -0.7208 -1.2500 6 6 3.5714 -0.6893 -1.2645 7 7 4.0679 -1.2494 -0.0002 8 6 4.9610 -2.2588 -0.0002 9 8 5.3628 -2.7131 -1.0505 10 6 5.4613 -2.8222 1.3049 11 16 6.6397 -4.1557 0.9743 12 6 7.0498 -4.6177 2.6245 13 1 6.5959 -4.1026 3.4581 14 6 7.9571 -5.6430 2.8529 15 7 8.5107 -6.2705 1.8368 16 14 8.3913 -6.1333 4.6023 17 1 7.1640 -6.5757 5.3116 18 1 9.3757 -7.2449 4.5750 19 1 8.9802 -4.9688 5.3111 20 6 3.5719 -0.6886 1.2640 21 6 2.0405 -0.7201 1.2502 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5134 0.8903 24 1 -0.3634 0.5143 -0.8896 25 1 1.6572 -0.2208 -2.1398 26 1 1.6974 -1.7555 -1.2384 27 1 3.9412 -1.2856 -2.0986 28 1 3.9148 0.3398 -1.3706 29 1 5.9537 -2.0348 1.8757 30 1 4.6207 -3.2143 1.8774 31 1 9.1445 -6.9873 1.9964 32 1 3.9422 -1.2844 2.0982 33 1 3.9175 0.3399 1.3679 34 1 1.6979 -1.7549 1.2387 35 1 1.6583 -0.2202 2.1402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701261390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:28 Heat of formation + Delta-G solvation = -17.074670 kcal Electronic energy + Delta-G solvation = -17982.435347 eV Core-core repulsion = 15106.485120 eV Total energy + Delta-G solvation = -2875.950227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44499 -38.34470 -35.92961 -34.07913 -32.43815 -31.78948 -29.58752 -28.04206 -25.50435 -24.04172 -23.56283 -22.39081 -19.58288 -17.81580 -16.88168 -16.34733 -15.72737 -15.35011 -15.24659 -14.81366 -14.73395 -14.18921 -13.96068 -13.74942 -13.31536 -13.06120 -12.72480 -12.61032 -12.45890 -12.38286 -12.19274 -12.02157 -11.65137 -11.53140 -11.06147 -11.04686 -10.98000 -10.83346 -10.75340 -9.82479 -9.39675 -9.06916 -8.61047 -8.24548 -6.51602 -6.22517 -3.93475 2.51620 2.53721 2.87619 3.00286 3.22732 3.24573 3.28367 3.52322 3.57113 4.18723 4.26136 4.31614 4.43755 4.70132 4.87860 4.99958 5.10858 5.12631 5.19799 5.24470 5.31805 5.37661 5.49903 5.53877 5.58425 5.69493 5.72207 5.80115 5.84944 5.90504 6.08895 6.55570 7.30993 7.48982 7.58187 8.33798 8.51411 9.22658 10.84833 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035500 B = 0.004091 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.544820 B = 6842.324037 C = 7188.708432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 C 0.216 3.784 4 N -0.434 5.434 5 C -0.122 4.122 6 C 0.108 3.892 7 N -0.620 5.620 8 C 0.537 3.463 9 O -0.515 6.515 10 C -0.152 4.152 11 S -0.060 6.060 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.103 3.897 21 C -0.124 4.124 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.269 0.731 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.127 10.901 -1.616 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.032 3.968 3 C -0.102 4.102 4 N -0.109 5.109 5 C -0.161 4.161 6 C -0.015 4.015 7 N -0.356 5.356 8 C 0.325 3.675 9 O -0.389 6.389 10 C -0.302 4.302 11 S 0.166 5.834 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.021 4.021 21 C -0.163 4.163 22 H 0.098 0.902 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.804 11.708 -3.246 19.935 hybrid contribution -0.322 -0.040 2.422 2.443 sum -16.126 11.668 -0.825 19.922 Atomic orbital electron populations 1.21878 0.91068 1.03828 1.03081 1.18394 0.96711 0.83201 0.98515 1.29078 0.93190 0.94609 0.93307 1.81235 1.08845 1.12568 1.08202 1.22073 0.96241 1.01922 0.95881 1.21540 0.92704 0.99102 0.88166 1.48084 1.44862 1.36391 1.06303 1.20342 0.77617 0.78152 0.91405 1.90694 1.56195 1.58627 1.33353 1.23564 1.04734 1.04762 0.97141 1.85416 1.49972 1.36626 1.11364 1.22816 1.30775 1.22792 0.92057 0.90982 1.24984 0.95042 0.95226 0.98245 1.70010 1.27590 1.22217 1.30455 0.86233 0.78345 0.78214 0.82759 1.19912 1.20812 1.19950 1.21754 0.93366 0.99651 0.87304 1.22085 0.96013 1.02136 0.96081 0.90170 0.91562 0.91588 0.89815 0.88911 0.88027 0.92184 0.89285 0.89112 0.92115 0.88316 0.91786 0.88761 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.43 37.16 0.31 -0.34 16 2 C 0.04 0.25 0.72 -157.26 -0.11 0.14 16 3 C 0.22 2.14 11.43 -20.76 -0.24 1.91 16 4 N -0.43 -5.53 18.54 42.16 0.78 -4.74 16 5 C -0.12 -0.93 4.88 -26.62 -0.13 -1.06 16 6 C 0.11 1.23 6.08 -3.71 -0.02 1.21 16 7 N -0.62 -8.30 2.97 -172.77 -0.51 -8.82 16 8 C 0.54 9.81 7.72 -10.99 -0.08 9.73 16 9 O -0.51 -11.40 15.27 5.56 0.08 -11.32 16 10 C -0.15 -2.97 4.50 36.00 0.16 -2.81 16 11 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 12 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 16 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C 0.10 1.06 5.99 -3.72 -0.02 1.04 16 21 C -0.12 -0.88 4.88 -26.62 -0.13 -1.01 16 22 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 1.32 7.00 -51.93 -0.36 0.95 16 28 H 0.06 0.70 7.39 -51.93 -0.38 0.31 16 29 H 0.09 1.64 7.95 -51.91 -0.41 1.23 16 30 H 0.09 1.60 7.69 -51.91 -0.40 1.20 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 33 H 0.06 0.68 7.39 -51.93 -0.38 0.29 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -34.74 307.53 -6.33 -41.07 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -4.75 Total: -3.98 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.07 Total: -3.93 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 1.00 Total: -38.74 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.74 -6.33 -41.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701261390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.999 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds