Wall clock time and date at job start Mon Mar 30 2020 04:52:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.47199 * 109.44724 * 2 1
4 4 N 2.60805 * 109.44832 * 359.97438 * 2 1 3
5 5 C 1.53036 * 109.46209 * 240.03130 * 2 1 3
6 6 C 1.53187 * 109.33909 * 178.63045 * 5 2 1
7 7 N 1.46928 * 108.77623 * 54.61900 * 6 5 2
8 8 C 1.34777 * 120.63052 * 126.36901 * 7 6 5
9 9 O 1.21280 * 120.00172 * 0.02562 * 8 7 6
10 10 C 1.50698 * 119.99915 * 179.97438 * 8 7 6
11 11 S 1.81004 * 109.47315 * 179.97438 * 10 8 7
12 12 C 1.76203 * 99.99945 * 180.02562 * 11 10 8
13 13 H 1.07995 * 119.99928 * 359.97438 * 12 11 10
14 14 C 1.38800 * 119.99736 * 180.02562 * 12 11 10
15 15 N 1.31638 * 119.99891 * 359.97438 * 14 12 11
16 16 Si 1.86791 * 119.99873 * 180.02562 * 14 12 11
17 17 H 1.48501 * 109.47489 * 59.99837 * 16 14 12
18 18 H 1.48503 * 109.47393 * 180.02562 * 16 14 12
19 19 H 1.48504 * 109.47364 * 299.99554 * 16 14 12
20 20 C 1.46927 * 118.73615 * 306.39196 * 7 6 5
21 21 C 1.53042 * 109.48686 * 119.94235 * 2 1 3
22 22 H 1.08997 * 109.46888 * 179.97438 * 1 2 3
23 23 H 1.09001 * 109.47188 * 299.96929 * 1 2 3
24 24 H 1.08996 * 109.47348 * 59.96742 * 1 2 3
25 25 H 1.09002 * 109.49886 * 58.66167 * 5 2 1
26 26 H 1.09000 * 109.49395 * 298.59644 * 5 2 1
27 27 H 1.09000 * 109.58836 * 174.40473 * 6 5 2
28 28 H 1.09005 * 109.59054 * 294.68564 * 6 5 2
29 29 H 1.09010 * 109.47401 * 300.00325 * 10 8 7
30 30 H 1.09002 * 109.47305 * 59.99565 * 10 8 7
31 31 H 0.97001 * 119.99751 * 180.02562 * 15 14 12
32 32 H 1.08999 * 109.58621 * 173.39948 * 20 7 6
33 33 H 1.09003 * 109.58297 * 293.67513 * 20 7 6
34 34 H 1.09003 * 109.46473 * 61.40247 * 21 2 1
35 35 H 1.09000 * 109.52301 * 301.34354 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0201 1.3880 0.0000
4 7 2.3984 2.4592 -0.0011
5 6 2.0399 -0.7208 -1.2500
6 6 3.5714 -0.6893 -1.2645
7 7 4.0679 -1.2494 -0.0002
8 6 4.9610 -2.2588 -0.0002
9 8 5.3628 -2.7131 -1.0505
10 6 5.4613 -2.8222 1.3049
11 16 6.6397 -4.1557 0.9743
12 6 7.0498 -4.6177 2.6245
13 1 6.5959 -4.1026 3.4581
14 6 7.9571 -5.6430 2.8529
15 7 8.5107 -6.2705 1.8368
16 14 8.3913 -6.1333 4.6023
17 1 7.1640 -6.5757 5.3116
18 1 9.3757 -7.2449 4.5750
19 1 8.9802 -4.9688 5.3111
20 6 3.5719 -0.6886 1.2640
21 6 2.0405 -0.7201 1.2502
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5134 0.8903
24 1 -0.3634 0.5143 -0.8896
25 1 1.6572 -0.2208 -2.1398
26 1 1.6974 -1.7555 -1.2384
27 1 3.9412 -1.2856 -2.0986
28 1 3.9148 0.3398 -1.3706
29 1 5.9537 -2.0348 1.8757
30 1 4.6207 -3.2143 1.8774
31 1 9.1445 -6.9873 1.9964
32 1 3.9422 -1.2844 2.0982
33 1 3.9175 0.3399 1.3679
34 1 1.6979 -1.7549 1.2387
35 1 1.6583 -0.2202 2.1402
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701261390.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:28
Heat of formation + Delta-G solvation = -17.074670 kcal
Electronic energy + Delta-G solvation = -17982.435347 eV
Core-core repulsion = 15106.485120 eV
Total energy + Delta-G solvation = -2875.950227 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.44499 -38.34470 -35.92961 -34.07913 -32.43815 -31.78948 -29.58752 -28.04206
-25.50435 -24.04172 -23.56283 -22.39081 -19.58288 -17.81580 -16.88168 -16.34733
-15.72737 -15.35011 -15.24659 -14.81366 -14.73395 -14.18921 -13.96068 -13.74942
-13.31536 -13.06120 -12.72480 -12.61032 -12.45890 -12.38286 -12.19274 -12.02157
-11.65137 -11.53140 -11.06147 -11.04686 -10.98000 -10.83346 -10.75340 -9.82479
-9.39675 -9.06916 -8.61047 -8.24548 -6.51602 -6.22517 -3.93475 2.51620
2.53721 2.87619 3.00286 3.22732 3.24573 3.28367 3.52322 3.57113
4.18723 4.26136 4.31614 4.43755 4.70132 4.87860 4.99958 5.10858
5.12631 5.19799 5.24470 5.31805 5.37661 5.49903 5.53877 5.58425
5.69493 5.72207 5.80115 5.84944 5.90504 6.08895 6.55570 7.30993
7.48982 7.58187 8.33798 8.51411 9.22658 10.84833
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.035500 B = 0.004091 C = 0.003894
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 788.544820 B = 6842.324037 C = 7188.708432
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.035 3.965
3 C 0.216 3.784
4 N -0.434 5.434
5 C -0.122 4.122
6 C 0.108 3.892
7 N -0.620 5.620
8 C 0.537 3.463
9 O -0.515 6.515
10 C -0.152 4.152
11 S -0.060 6.060
12 C -0.536 4.536
13 H 0.072 0.928
14 C 0.074 3.926
15 N -0.868 5.868
16 Si 0.918 3.082
17 H -0.274 1.274
18 H -0.283 1.283
19 H -0.274 1.274
20 C 0.103 3.897
21 C -0.124 4.124
22 H 0.079 0.921
23 H 0.065 0.935
24 H 0.065 0.935
25 H 0.083 0.917
26 H 0.092 0.908
27 H 0.101 0.899
28 H 0.060 0.940
29 H 0.089 0.911
30 H 0.091 0.909
31 H 0.269 0.731
32 H 0.099 0.901
33 H 0.064 0.936
34 H 0.094 0.906
35 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.127 10.901 -1.616 20.366
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.032 3.968
3 C -0.102 4.102
4 N -0.109 5.109
5 C -0.161 4.161
6 C -0.015 4.015
7 N -0.356 5.356
8 C 0.325 3.675
9 O -0.389 6.389
10 C -0.302 4.302
11 S 0.166 5.834
12 C -0.684 4.684
13 H 0.090 0.910
14 C -0.135 4.135
15 N -0.503 5.503
16 Si 0.744 3.256
17 H -0.199 1.199
18 H -0.208 1.208
19 H -0.199 1.199
20 C -0.021 4.021
21 C -0.163 4.163
22 H 0.098 0.902
23 H 0.084 0.916
24 H 0.084 0.916
25 H 0.102 0.898
26 H 0.111 0.889
27 H 0.120 0.880
28 H 0.078 0.922
29 H 0.107 0.893
30 H 0.109 0.891
31 H 0.079 0.921
32 H 0.117 0.883
33 H 0.082 0.918
34 H 0.112 0.888
35 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -15.804 11.708 -3.246 19.935
hybrid contribution -0.322 -0.040 2.422 2.443
sum -16.126 11.668 -0.825 19.922
Atomic orbital electron populations
1.21878 0.91068 1.03828 1.03081 1.18394 0.96711 0.83201 0.98515
1.29078 0.93190 0.94609 0.93307 1.81235 1.08845 1.12568 1.08202
1.22073 0.96241 1.01922 0.95881 1.21540 0.92704 0.99102 0.88166
1.48084 1.44862 1.36391 1.06303 1.20342 0.77617 0.78152 0.91405
1.90694 1.56195 1.58627 1.33353 1.23564 1.04734 1.04762 0.97141
1.85416 1.49972 1.36626 1.11364 1.22816 1.30775 1.22792 0.92057
0.90982 1.24984 0.95042 0.95226 0.98245 1.70010 1.27590 1.22217
1.30455 0.86233 0.78345 0.78214 0.82759 1.19912 1.20812 1.19950
1.21754 0.93366 0.99651 0.87304 1.22085 0.96013 1.02136 0.96081
0.90170 0.91562 0.91588 0.89815 0.88911 0.88027 0.92184 0.89285
0.89112 0.92115 0.88316 0.91786 0.88761 0.89619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.66 8.43 37.16 0.31 -0.34 16
2 C 0.04 0.25 0.72 -157.26 -0.11 0.14 16
3 C 0.22 2.14 11.43 -20.76 -0.24 1.91 16
4 N -0.43 -5.53 18.54 42.16 0.78 -4.74 16
5 C -0.12 -0.93 4.88 -26.62 -0.13 -1.06 16
6 C 0.11 1.23 6.08 -3.71 -0.02 1.21 16
7 N -0.62 -8.30 2.97 -172.77 -0.51 -8.82 16
8 C 0.54 9.81 7.72 -10.99 -0.08 9.73 16
9 O -0.51 -11.40 15.27 5.56 0.08 -11.32 16
10 C -0.15 -2.97 4.50 36.00 0.16 -2.81 16
11 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16
12 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16
13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16
14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
15 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16
16 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16
17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
20 C 0.10 1.06 5.99 -3.72 -0.02 1.04 16
21 C -0.12 -0.88 4.88 -26.62 -0.13 -1.01 16
22 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16
23 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16
24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
27 H 0.10 1.32 7.00 -51.93 -0.36 0.95 16
28 H 0.06 0.70 7.39 -51.93 -0.38 0.31 16
29 H 0.09 1.64 7.95 -51.91 -0.41 1.23 16
30 H 0.09 1.60 7.69 -51.91 -0.40 1.20 16
31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
32 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16
33 H 0.06 0.68 7.39 -51.93 -0.38 0.29 16
34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 307.53 15.07 4.63 4.63
Total: -1.00 -34.74 307.53 -6.33 -41.07
By element:
Atomic # 1 Polarization: 0.77 SS G_CDS: -4.75 Total: -3.98 kcal
Atomic # 6 Polarization: -3.87 SS G_CDS: -0.07 Total: -3.93 kcal
Atomic # 7 Polarization: -39.74 SS G_CDS: 1.00 Total: -38.74 kcal
Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -34.74 -6.33 -41.07 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701261390.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.999 kcal
(2) G-P(sol) polarization free energy of solvation -34.739 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.740 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds