Wall clock time and date at job start Mon Mar 30 2020 04:52:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.47199 * 109.44724 * 2 1
4 4 N 2.60805 * 109.44832 * 359.97438 * 2 1 3
5 5 C 1.53036 * 109.46209 * 240.03130 * 2 1 3
6 6 C 1.53187 * 109.33909 * 178.63045 * 5 2 1
7 7 N 1.46928 * 108.77623 * 54.61900 * 6 5 2
8 8 C 1.34777 * 120.63052 * 126.36901 * 7 6 5
9 9 O 1.21280 * 120.00172 * 0.02562 * 8 7 6
10 10 C 1.50698 * 119.99915 * 179.97438 * 8 7 6
11 11 S 1.81004 * 109.47315 * 179.97438 * 10 8 7
12 12 C 1.76203 * 99.99945 * 180.02562 * 11 10 8
13 13 H 1.07995 * 119.99928 * 359.97438 * 12 11 10
14 14 C 1.38800 * 119.99736 * 180.02562 * 12 11 10
15 15 N 1.31638 * 119.99891 * 359.97438 * 14 12 11
16 16 Si 1.86791 * 119.99873 * 180.02562 * 14 12 11
17 17 H 1.48501 * 109.47489 * 59.99837 * 16 14 12
18 18 H 1.48503 * 109.47393 * 180.02562 * 16 14 12
19 19 H 1.48504 * 109.47364 * 299.99554 * 16 14 12
20 20 C 1.46927 * 118.73615 * 306.39196 * 7 6 5
21 21 C 1.53042 * 109.48686 * 119.94235 * 2 1 3
22 22 H 1.08997 * 109.46888 * 179.97438 * 1 2 3
23 23 H 1.09001 * 109.47188 * 299.96929 * 1 2 3
24 24 H 1.08996 * 109.47348 * 59.96742 * 1 2 3
25 25 H 1.09002 * 109.49886 * 58.66167 * 5 2 1
26 26 H 1.09000 * 109.49395 * 298.59644 * 5 2 1
27 27 H 1.09000 * 109.58836 * 174.40473 * 6 5 2
28 28 H 1.09005 * 109.59054 * 294.68564 * 6 5 2
29 29 H 1.09010 * 109.47401 * 300.00325 * 10 8 7
30 30 H 1.09002 * 109.47305 * 59.99565 * 10 8 7
31 31 H 0.97001 * 119.99751 * 180.02562 * 15 14 12
32 32 H 1.08999 * 109.58621 * 173.39948 * 20 7 6
33 33 H 1.09003 * 109.58297 * 293.67513 * 20 7 6
34 34 H 1.09003 * 109.46473 * 61.40247 * 21 2 1
35 35 H 1.09000 * 109.52301 * 301.34354 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0201 1.3880 0.0000
4 7 2.3984 2.4592 -0.0011
5 6 2.0399 -0.7208 -1.2500
6 6 3.5714 -0.6893 -1.2645
7 7 4.0679 -1.2494 -0.0002
8 6 4.9610 -2.2588 -0.0002
9 8 5.3628 -2.7131 -1.0505
10 6 5.4613 -2.8222 1.3049
11 16 6.6397 -4.1557 0.9743
12 6 7.0498 -4.6177 2.6245
13 1 6.5959 -4.1026 3.4581
14 6 7.9571 -5.6430 2.8529
15 7 8.5107 -6.2705 1.8368
16 14 8.3913 -6.1333 4.6023
17 1 7.1640 -6.5757 5.3116
18 1 9.3757 -7.2449 4.5750
19 1 8.9802 -4.9688 5.3111
20 6 3.5719 -0.6886 1.2640
21 6 2.0405 -0.7201 1.2502
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5134 0.8903
24 1 -0.3634 0.5143 -0.8896
25 1 1.6572 -0.2208 -2.1398
26 1 1.6974 -1.7555 -1.2384
27 1 3.9412 -1.2856 -2.0986
28 1 3.9148 0.3398 -1.3706
29 1 5.9537 -2.0348 1.8757
30 1 4.6207 -3.2143 1.8774
31 1 9.1445 -6.9873 1.9964
32 1 3.9422 -1.2844 2.0982
33 1 3.9175 0.3399 1.3679
34 1 1.6979 -1.7549 1.2387
35 1 1.6583 -0.2202 2.1402
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701261390.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:28
Heat of formation + Delta-G solvation = -40.104036 kcal
Electronic energy + Delta-G solvation = -17983.433975 eV
Core-core repulsion = 15106.485120 eV
Total energy + Delta-G solvation = -2876.948856 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.45843 -39.48043 -36.91320 -35.03223 -34.56067 -32.67949 -30.81438 -28.94806
-27.62764 -24.76899 -24.37188 -23.24158 -20.83010 -19.65115 -18.25950 -17.24725
-16.98146 -16.85162 -16.47878 -15.96331 -15.80805 -15.46621 -15.03085 -14.65577
-14.59309 -14.44601 -13.76442 -13.55692 -13.53888 -13.39518 -13.14974 -12.85189
-12.80605 -12.74889 -12.60329 -12.42997 -12.23958 -11.72219 -11.70638 -11.48416
-11.10717 -10.85615 -10.23960 -9.74260 -8.65027 -8.32410 -6.10639 1.27080
1.45688 1.47483 1.56792 1.57514 1.74666 1.78452 2.08309 2.29588
2.85639 3.01901 3.25861 3.58976 3.64201 3.81909 3.84356 4.01703
4.22434 4.26968 4.34776 4.46639 4.57295 4.66742 4.71893 4.80329
4.89475 5.01448 5.04204 5.13083 5.19350 5.40137 5.43762 5.53339
6.21497 6.25727 6.56253 7.08911 7.13520 8.76532
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.035500 B = 0.004091 C = 0.003894
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 788.544820 B = 6842.324037 C = 7188.708432
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.040 3.960
3 C 0.238 3.762
4 N -0.488 5.488
5 C -0.114 4.114
6 C 0.103 3.897
7 N -0.606 5.606
8 C 0.536 3.464
9 O -0.564 6.564
10 C -0.125 4.125
11 S -0.153 6.153
12 C -0.546 4.546
13 H 0.084 0.916
14 C 0.015 3.985
15 N -0.912 5.912
16 Si 0.997 3.003
17 H -0.259 1.259
18 H -0.280 1.280
19 H -0.264 1.264
20 C 0.093 3.907
21 C -0.119 4.119
22 H 0.099 0.901
23 H 0.073 0.927
24 H 0.070 0.930
25 H 0.103 0.897
26 H 0.105 0.895
27 H 0.081 0.919
28 H 0.056 0.944
29 H 0.102 0.898
30 H 0.116 0.884
31 H 0.271 0.729
32 H 0.102 0.898
33 H 0.062 0.938
34 H 0.110 0.890
35 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.578 11.445 0.315 22.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.036 3.964
3 C -0.079 4.079
4 N -0.164 5.164
5 C -0.153 4.153
6 C -0.020 4.020
7 N -0.340 5.340
8 C 0.324 3.676
9 O -0.443 6.443
10 C -0.276 4.276
11 S 0.075 5.925
12 C -0.693 4.693
13 H 0.102 0.898
14 C -0.190 4.190
15 N -0.548 5.548
16 Si 0.819 3.181
17 H -0.184 1.184
18 H -0.206 1.206
19 H -0.189 1.189
20 C -0.030 4.030
21 C -0.158 4.158
22 H 0.117 0.883
23 H 0.092 0.908
24 H 0.089 0.911
25 H 0.122 0.878
26 H 0.123 0.877
27 H 0.100 0.900
28 H 0.075 0.925
29 H 0.121 0.879
30 H 0.134 0.866
31 H 0.080 0.920
32 H 0.120 0.880
33 H 0.080 0.920
34 H 0.128 0.872
35 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -18.305 12.303 -1.300 22.093
hybrid contribution 0.374 -0.090 1.768 1.810
sum -17.931 12.213 0.469 21.700
Atomic orbital electron populations
1.21899 0.88417 1.05326 1.03793 1.18592 0.98561 0.81151 0.98068
1.29640 0.91717 0.94853 0.91707 1.81265 1.10704 1.14447 1.09943
1.22066 0.92779 1.03148 0.97293 1.21698 0.95644 0.98088 0.86545
1.48063 1.43011 1.34472 1.08450 1.20122 0.78303 0.79160 0.90064
1.90679 1.58310 1.60751 1.34517 1.23387 1.03453 1.02255 0.98478
1.85608 1.53306 1.40632 1.12996 1.23168 1.30968 1.23053 0.92145
0.89790 1.26109 0.94724 0.95044 1.03146 1.70183 1.28458 1.22970
1.33224 0.85023 0.78468 0.77995 0.76636 1.18366 1.20564 1.18851
1.22058 0.96011 0.99248 0.85647 1.22131 0.93035 1.03475 0.97114
0.88261 0.90780 0.91117 0.87818 0.87667 0.90008 0.92544 0.87931
0.86595 0.92037 0.87971 0.91973 0.87189 0.87145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.68 8.43 71.98 0.61 -0.07 16
2 C 0.04 0.43 0.72 -53.96 -0.04 0.39 16
3 C 0.24 4.19 11.43 89.44 1.02 5.22 16
4 N -0.49 -11.89 18.54 20.01 0.37 -11.52 16
5 C -0.11 -1.43 4.88 30.67 0.15 -1.28 16
6 C 0.10 2.26 6.08 86.36 0.53 2.78 16
7 N -0.61 -15.50 2.97 -818.93 -2.43 -17.94 16
8 C 0.54 19.57 7.72 87.66 0.68 20.25 16
9 O -0.56 -25.85 15.27 -3.03 -0.05 -25.89 16
10 C -0.12 -4.82 4.50 71.24 0.32 -4.50 16
11 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16
12 C -0.55 -30.62 9.50 67.95 0.65 -29.98 16
13 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16
14 C 0.01 0.82 5.49 84.86 0.47 1.28 16
15 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16
16 Si 1.00 42.88 29.55 68.60 2.03 44.91 16
17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16
18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
19 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16
20 C 0.09 1.68 5.99 86.36 0.52 2.19 16
21 C -0.12 -1.23 4.88 30.67 0.15 -1.08 16
22 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16
23 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16
24 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16
25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16
26 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
27 H 0.08 2.16 7.00 -2.39 -0.02 2.14 16
28 H 0.06 1.29 7.39 -2.38 -0.02 1.27 16
29 H 0.10 3.67 7.95 -2.39 -0.02 3.65 16
30 H 0.12 3.87 7.69 -2.39 -0.02 3.85 16
31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16
32 H 0.10 1.79 5.93 -2.39 -0.01 1.78 16
33 H 0.06 1.19 7.39 -2.39 -0.02 1.17 16
34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16
35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16
Total: -1.00 -79.04 307.53 5.17 -73.87
By element:
Atomic # 1 Polarization: 5.15 SS G_CDS: 1.09 Total: 6.23 kcal
Atomic # 6 Polarization: -9.84 SS G_CDS: 5.04 Total: -4.80 kcal
Atomic # 7 Polarization: -83.01 SS G_CDS: -1.78 Total: -84.79 kcal
Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.89 kcal
Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal
Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal
Total: -79.04 5.17 -73.87 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701261390.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.768 kcal
(2) G-P(sol) polarization free energy of solvation -79.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.274 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds