Wall clock time and date at job start Mon Mar 30 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47199 * 109.44724 * 2 1 4 4 N 2.60805 * 109.44832 * 359.97438 * 2 1 3 5 5 C 1.53036 * 109.46209 * 240.03130 * 2 1 3 6 6 C 1.53187 * 109.33909 * 178.63045 * 5 2 1 7 7 N 1.46928 * 108.77623 * 54.61900 * 6 5 2 8 8 C 1.34777 * 120.63052 * 126.36901 * 7 6 5 9 9 O 1.21280 * 120.00172 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99915 * 179.97438 * 8 7 6 11 11 S 1.81004 * 109.47315 * 179.97438 * 10 8 7 12 12 C 1.76203 * 99.99945 * 180.02562 * 11 10 8 13 13 H 1.07995 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31638 * 119.99891 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 119.99873 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47489 * 59.99837 * 16 14 12 18 18 H 1.48503 * 109.47393 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47364 * 299.99554 * 16 14 12 20 20 C 1.46927 * 118.73615 * 306.39196 * 7 6 5 21 21 C 1.53042 * 109.48686 * 119.94235 * 2 1 3 22 22 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47188 * 299.96929 * 1 2 3 24 24 H 1.08996 * 109.47348 * 59.96742 * 1 2 3 25 25 H 1.09002 * 109.49886 * 58.66167 * 5 2 1 26 26 H 1.09000 * 109.49395 * 298.59644 * 5 2 1 27 27 H 1.09000 * 109.58836 * 174.40473 * 6 5 2 28 28 H 1.09005 * 109.59054 * 294.68564 * 6 5 2 29 29 H 1.09010 * 109.47401 * 300.00325 * 10 8 7 30 30 H 1.09002 * 109.47305 * 59.99565 * 10 8 7 31 31 H 0.97001 * 119.99751 * 180.02562 * 15 14 12 32 32 H 1.08999 * 109.58621 * 173.39948 * 20 7 6 33 33 H 1.09003 * 109.58297 * 293.67513 * 20 7 6 34 34 H 1.09003 * 109.46473 * 61.40247 * 21 2 1 35 35 H 1.09000 * 109.52301 * 301.34354 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0201 1.3880 0.0000 4 7 2.3984 2.4592 -0.0011 5 6 2.0399 -0.7208 -1.2500 6 6 3.5714 -0.6893 -1.2645 7 7 4.0679 -1.2494 -0.0002 8 6 4.9610 -2.2588 -0.0002 9 8 5.3628 -2.7131 -1.0505 10 6 5.4613 -2.8222 1.3049 11 16 6.6397 -4.1557 0.9743 12 6 7.0498 -4.6177 2.6245 13 1 6.5959 -4.1026 3.4581 14 6 7.9571 -5.6430 2.8529 15 7 8.5107 -6.2705 1.8368 16 14 8.3913 -6.1333 4.6023 17 1 7.1640 -6.5757 5.3116 18 1 9.3757 -7.2449 4.5750 19 1 8.9802 -4.9688 5.3111 20 6 3.5719 -0.6886 1.2640 21 6 2.0405 -0.7201 1.2502 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5134 0.8903 24 1 -0.3634 0.5143 -0.8896 25 1 1.6572 -0.2208 -2.1398 26 1 1.6974 -1.7555 -1.2384 27 1 3.9412 -1.2856 -2.0986 28 1 3.9148 0.3398 -1.3706 29 1 5.9537 -2.0348 1.8757 30 1 4.6207 -3.2143 1.8774 31 1 9.1445 -6.9873 1.9964 32 1 3.9422 -1.2844 2.0982 33 1 3.9175 0.3399 1.3679 34 1 1.6979 -1.7549 1.2387 35 1 1.6583 -0.2202 2.1402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701261390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:28 Heat of formation + Delta-G solvation = -40.104036 kcal Electronic energy + Delta-G solvation = -17983.433975 eV Core-core repulsion = 15106.485120 eV Total energy + Delta-G solvation = -2876.948856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45843 -39.48043 -36.91320 -35.03223 -34.56067 -32.67949 -30.81438 -28.94806 -27.62764 -24.76899 -24.37188 -23.24158 -20.83010 -19.65115 -18.25950 -17.24725 -16.98146 -16.85162 -16.47878 -15.96331 -15.80805 -15.46621 -15.03085 -14.65577 -14.59309 -14.44601 -13.76442 -13.55692 -13.53888 -13.39518 -13.14974 -12.85189 -12.80605 -12.74889 -12.60329 -12.42997 -12.23958 -11.72219 -11.70638 -11.48416 -11.10717 -10.85615 -10.23960 -9.74260 -8.65027 -8.32410 -6.10639 1.27080 1.45688 1.47483 1.56792 1.57514 1.74666 1.78452 2.08309 2.29588 2.85639 3.01901 3.25861 3.58976 3.64201 3.81909 3.84356 4.01703 4.22434 4.26968 4.34776 4.46639 4.57295 4.66742 4.71893 4.80329 4.89475 5.01448 5.04204 5.13083 5.19350 5.40137 5.43762 5.53339 6.21497 6.25727 6.56253 7.08911 7.13520 8.76532 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035500 B = 0.004091 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.544820 B = 6842.324037 C = 7188.708432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.040 3.960 3 C 0.238 3.762 4 N -0.488 5.488 5 C -0.114 4.114 6 C 0.103 3.897 7 N -0.606 5.606 8 C 0.536 3.464 9 O -0.564 6.564 10 C -0.125 4.125 11 S -0.153 6.153 12 C -0.546 4.546 13 H 0.084 0.916 14 C 0.015 3.985 15 N -0.912 5.912 16 Si 0.997 3.003 17 H -0.259 1.259 18 H -0.280 1.280 19 H -0.264 1.264 20 C 0.093 3.907 21 C -0.119 4.119 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.271 0.729 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 11.445 0.315 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 C -0.079 4.079 4 N -0.164 5.164 5 C -0.153 4.153 6 C -0.020 4.020 7 N -0.340 5.340 8 C 0.324 3.676 9 O -0.443 6.443 10 C -0.276 4.276 11 S 0.075 5.925 12 C -0.693 4.693 13 H 0.102 0.898 14 C -0.190 4.190 15 N -0.548 5.548 16 Si 0.819 3.181 17 H -0.184 1.184 18 H -0.206 1.206 19 H -0.189 1.189 20 C -0.030 4.030 21 C -0.158 4.158 22 H 0.117 0.883 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.305 12.303 -1.300 22.093 hybrid contribution 0.374 -0.090 1.768 1.810 sum -17.931 12.213 0.469 21.700 Atomic orbital electron populations 1.21899 0.88417 1.05326 1.03793 1.18592 0.98561 0.81151 0.98068 1.29640 0.91717 0.94853 0.91707 1.81265 1.10704 1.14447 1.09943 1.22066 0.92779 1.03148 0.97293 1.21698 0.95644 0.98088 0.86545 1.48063 1.43011 1.34472 1.08450 1.20122 0.78303 0.79160 0.90064 1.90679 1.58310 1.60751 1.34517 1.23387 1.03453 1.02255 0.98478 1.85608 1.53306 1.40632 1.12996 1.23168 1.30968 1.23053 0.92145 0.89790 1.26109 0.94724 0.95044 1.03146 1.70183 1.28458 1.22970 1.33224 0.85023 0.78468 0.77995 0.76636 1.18366 1.20564 1.18851 1.22058 0.96011 0.99248 0.85647 1.22131 0.93035 1.03475 0.97114 0.88261 0.90780 0.91117 0.87818 0.87667 0.90008 0.92544 0.87931 0.86595 0.92037 0.87971 0.91973 0.87189 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.43 71.98 0.61 -0.07 16 2 C 0.04 0.43 0.72 -53.96 -0.04 0.39 16 3 C 0.24 4.19 11.43 89.44 1.02 5.22 16 4 N -0.49 -11.89 18.54 20.01 0.37 -11.52 16 5 C -0.11 -1.43 4.88 30.67 0.15 -1.28 16 6 C 0.10 2.26 6.08 86.36 0.53 2.78 16 7 N -0.61 -15.50 2.97 -818.93 -2.43 -17.94 16 8 C 0.54 19.57 7.72 87.66 0.68 20.25 16 9 O -0.56 -25.85 15.27 -3.03 -0.05 -25.89 16 10 C -0.12 -4.82 4.50 71.24 0.32 -4.50 16 11 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 12 C -0.55 -30.62 9.50 67.95 0.65 -29.98 16 13 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 14 C 0.01 0.82 5.49 84.86 0.47 1.28 16 15 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 16 Si 1.00 42.88 29.55 68.60 2.03 44.91 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 20 C 0.09 1.68 5.99 86.36 0.52 2.19 16 21 C -0.12 -1.23 4.88 30.67 0.15 -1.08 16 22 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 23 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 24 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 2.16 7.00 -2.39 -0.02 2.14 16 28 H 0.06 1.29 7.39 -2.38 -0.02 1.27 16 29 H 0.10 3.67 7.95 -2.39 -0.02 3.65 16 30 H 0.12 3.87 7.69 -2.39 -0.02 3.85 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.10 1.79 5.93 -2.39 -0.01 1.78 16 33 H 0.06 1.19 7.39 -2.39 -0.02 1.17 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -79.04 307.53 5.17 -73.87 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.09 Total: 6.23 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.04 Total: -4.80 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.78 Total: -84.79 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -79.04 5.17 -73.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701261390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.768 kcal (2) G-P(sol) polarization free energy of solvation -79.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds