Wall clock time and date at job start Mon Mar 30 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 119.99947 * 2 1 4 4 C 1.52995 * 109.47164 * 90.00013 * 3 2 1 5 5 C 1.50704 * 109.47075 * 180.02562 * 4 3 2 6 6 N 1.33319 * 126.54901 * 269.68747 * 5 4 3 7 7 N 1.28991 * 107.35546 * 179.83907 * 6 5 4 8 8 N 1.28781 * 108.72537 * 0.42424 * 7 6 5 9 9 H 0.97000 * 125.45088 * 179.72810 * 8 7 6 10 10 N 1.28884 * 109.10334 * 359.73471 * 8 7 6 11 11 C 1.34782 * 119.99786 * 180.27118 * 2 1 3 12 12 O 1.21439 * 119.99609 * 185.06842 * 11 2 1 13 13 C 1.48832 * 119.99853 * 5.07136 * 11 2 1 14 14 O 1.21501 * 120.00107 * 5.98714 * 13 11 2 15 15 N 1.34774 * 119.99554 * 185.98713 * 13 11 2 16 16 C 1.36119 * 119.99877 * 179.97438 * 15 13 11 17 17 H 1.07998 * 119.99940 * 0.02562 * 16 15 13 18 18 C 1.39587 * 120.00215 * 179.97438 * 16 15 13 19 19 N 1.31015 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47219 * 60.00182 * 20 18 16 22 22 H 1.48502 * 109.47416 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47201 * 300.00423 * 20 18 16 24 24 H 1.09002 * 109.47479 * 95.24950 * 1 2 3 25 25 H 1.08997 * 109.47454 * 215.24598 * 1 2 3 26 26 H 1.08998 * 109.47391 * 335.25381 * 1 2 3 27 27 H 1.09009 * 109.46955 * 209.99912 * 3 2 1 28 28 H 1.08998 * 109.47084 * 329.99380 * 3 2 1 29 29 H 1.09003 * 109.47320 * 299.99391 * 4 3 2 30 30 H 1.08998 * 109.47637 * 59.99706 * 4 3 2 31 31 H 0.97001 * 120.00418 * 0.02562 * 15 13 11 32 32 H 0.97001 * 120.00296 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 1.4424 5 6 3.2054 3.0158 1.4424 6 7 4.5298 3.1685 1.4481 7 7 4.7711 4.4356 1.4424 8 7 3.6503 5.0699 1.4424 9 1 3.5499 6.0347 1.4425 10 7 2.6834 4.2178 1.4425 11 6 2.1388 -1.1673 -0.0055 12 8 3.3496 -1.1697 0.0874 13 6 1.3989 -2.4531 -0.1255 14 8 0.2009 -2.4480 -0.3276 15 7 2.0580 -3.6230 -0.0101 16 6 1.3813 -4.7990 -0.1193 17 1 0.3164 -4.7945 -0.2989 18 6 2.0639 -6.0107 -0.0003 19 7 3.3559 -6.0162 0.2171 20 14 1.1354 -7.6246 -0.1509 21 1 0.4944 -7.7039 -1.4880 22 1 2.0817 -8.7573 0.0128 23 1 0.0919 -7.6956 0.9033 24 1 -0.3634 -0.0940 -1.0233 25 1 -0.3634 -0.8392 0.5930 26 1 -0.3634 0.9333 0.4302 27 1 3.1499 1.1383 -0.5139 28 1 1.6084 2.0283 -0.5139 29 1 1.5000 1.8408 1.9563 30 1 3.0414 0.9508 1.9564 31 1 3.0144 -3.6270 0.1516 32 1 3.8303 -6.8582 0.3002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707564129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:18 Heat of formation + Delta-G solvation = 61.784452 kcal Electronic energy + Delta-G solvation = -19721.713678 eV Core-core repulsion = 16335.182575 eV Total energy + Delta-G solvation = -3386.531103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.107 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.63038 -39.73789 -37.36969 -35.89347 -34.66374 -34.16277 -33.59894 -31.41936 -30.56101 -26.47493 -26.12541 -24.82613 -24.58796 -22.39645 -21.34830 -19.33643 -18.91136 -18.10152 -17.24427 -16.61210 -16.20853 -15.44181 -15.05453 -14.67127 -14.55911 -13.97332 -13.64770 -13.45072 -13.24143 -12.71163 -12.37159 -12.31164 -12.28009 -11.89418 -11.67444 -11.44334 -11.27319 -11.16177 -10.96693 -10.55727 -10.53501 -10.41397 -10.23925 -9.68546 -8.41196 -8.19855 -8.07297 -6.66412 -3.98702 0.95265 1.91950 2.12685 2.43968 3.11550 3.17430 3.17578 3.24973 3.82749 4.05531 4.16877 4.25201 4.79612 5.04542 5.11213 5.19149 5.20427 5.39660 5.52407 5.60422 5.83163 5.93572 6.05752 6.14356 6.23643 6.45301 6.85630 7.31268 7.59686 7.78019 8.07335 8.30339 8.57742 8.95884 9.32367 9.85438 10.48249 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.044171 B = 0.003600 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.743363 B = 7776.207334 C = 8284.967537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.602 5.602 3 C 0.125 3.875 4 C -0.042 4.042 5 C 0.186 3.814 6 N -0.267 5.267 7 N -0.055 5.055 8 N -0.234 5.234 9 H 0.473 0.527 10 N -0.302 5.302 11 C 0.512 3.488 12 O -0.539 6.539 13 C 0.393 3.607 14 O -0.591 6.591 15 N -0.498 5.498 16 C -0.306 4.306 17 H 0.112 0.888 18 C 0.031 3.969 19 N -0.868 5.868 20 Si 0.939 3.061 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.269 1.269 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.405 0.595 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 17.554 2.266 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.337 5.337 3 C 0.000 4.000 4 C -0.084 4.084 5 C -0.097 4.097 6 N -0.140 5.140 7 N -0.051 5.051 8 N -0.080 5.080 9 H 0.326 0.674 10 N -0.154 5.154 11 C 0.298 3.702 12 O -0.415 6.415 13 C 0.178 3.822 14 O -0.480 6.480 15 N -0.132 5.132 16 C -0.437 4.437 17 H 0.130 0.870 18 C -0.176 4.176 19 N -0.506 5.506 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.194 1.194 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.240 0.760 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.583 17.714 2.213 17.922 hybrid contribution -0.258 -0.249 0.030 0.360 sum -1.841 17.465 2.243 17.705 Atomic orbital electron populations 1.22077 0.77730 1.02438 1.03182 1.47566 1.07959 1.04420 1.73716 1.21283 0.98655 0.85588 0.94443 1.20457 0.99656 0.87948 1.00362 1.25627 0.88898 0.94576 1.00620 1.75996 1.14692 1.06150 1.17164 1.78989 1.10880 1.00284 1.14917 1.47801 1.01379 1.12325 1.46496 0.67385 1.74725 1.18362 1.00134 1.22168 1.20829 0.87357 0.85720 0.76281 1.90712 1.14259 1.87566 1.48968 1.18870 0.87958 0.84146 0.91217 1.90537 1.14030 1.86163 1.57252 1.41570 1.11792 1.04188 1.55640 1.19825 0.95372 0.81906 1.46570 0.86986 1.25587 0.95647 1.00450 0.95889 1.69476 1.07727 1.29356 1.44014 0.85784 0.78904 0.79361 0.79469 1.19397 1.20619 1.19382 0.92563 0.88152 0.92934 0.89395 0.90273 0.88467 0.87550 0.76002 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 9.23 59.84 0.55 1.87 16 2 N -0.60 -10.13 2.87 -182.33 -0.52 -10.66 16 3 C 0.13 1.72 5.33 -4.05 -0.02 1.70 16 4 C -0.04 -0.53 6.17 -27.88 -0.17 -0.70 16 5 C 0.19 2.33 7.62 -156.62 -1.19 1.14 16 6 N -0.27 -3.76 12.50 32.45 0.41 -3.36 16 7 N -0.06 -0.64 13.48 60.35 0.81 0.18 16 8 N -0.23 -1.94 7.91 60.34 0.48 -1.46 16 9 H 0.47 1.51 8.96 -340.53 -3.05 -1.54 16 10 N -0.30 -3.19 12.36 32.47 0.40 -2.79 16 11 C 0.51 10.92 7.70 -11.87 -0.09 10.83 16 12 O -0.54 -12.44 16.11 5.42 0.09 -12.35 16 13 C 0.39 9.62 7.63 -11.88 -0.09 9.52 16 14 O -0.59 -14.90 12.92 5.36 0.07 -14.83 16 15 N -0.50 -13.08 5.24 -11.59 -0.06 -13.14 16 16 C -0.31 -8.27 9.67 -15.15 -0.15 -8.42 16 17 H 0.11 3.06 7.15 -52.49 -0.38 2.69 16 18 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 19 N -0.87 -23.09 13.03 55.53 0.72 -22.37 16 20 Si 0.94 19.85 29.56 -169.99 -5.02 14.83 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 25 H 0.10 1.75 5.95 -51.93 -0.31 1.44 16 26 H 0.05 0.58 8.03 -51.93 -0.42 0.17 16 27 H 0.09 1.36 7.49 -51.92 -0.39 0.97 16 28 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.40 10.79 7.36 -40.82 -0.30 10.49 16 32 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -32.13 291.88 -5.15 -37.29 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.66 Total: 7.61 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: -1.26 Total: 16.65 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 2.24 Total: -53.59 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: 0.16 Total: -27.18 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.13 -5.15 -37.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707564129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.070 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds