Wall clock time and date at job start Mon Mar 30 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 119.99947 * 2 1 4 4 C 1.52995 * 109.47164 * 90.00013 * 3 2 1 5 5 C 1.50704 * 109.47075 * 180.02562 * 4 3 2 6 6 N 1.33319 * 126.54901 * 269.68747 * 5 4 3 7 7 N 1.28991 * 107.35546 * 179.83907 * 6 5 4 8 8 N 1.28781 * 108.72537 * 0.42424 * 7 6 5 9 9 H 0.97000 * 125.45088 * 179.72810 * 8 7 6 10 10 N 1.28884 * 109.10334 * 359.73471 * 8 7 6 11 11 C 1.34782 * 119.99786 * 180.27118 * 2 1 3 12 12 O 1.21439 * 119.99609 * 185.06842 * 11 2 1 13 13 C 1.48832 * 119.99853 * 5.07136 * 11 2 1 14 14 O 1.21501 * 120.00107 * 5.98714 * 13 11 2 15 15 N 1.34774 * 119.99554 * 185.98713 * 13 11 2 16 16 C 1.36119 * 119.99877 * 179.97438 * 15 13 11 17 17 H 1.07998 * 119.99940 * 0.02562 * 16 15 13 18 18 C 1.39587 * 120.00215 * 179.97438 * 16 15 13 19 19 N 1.31015 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47219 * 60.00182 * 20 18 16 22 22 H 1.48502 * 109.47416 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47201 * 300.00423 * 20 18 16 24 24 H 1.09002 * 109.47479 * 95.24950 * 1 2 3 25 25 H 1.08997 * 109.47454 * 215.24598 * 1 2 3 26 26 H 1.08998 * 109.47391 * 335.25381 * 1 2 3 27 27 H 1.09009 * 109.46955 * 209.99912 * 3 2 1 28 28 H 1.08998 * 109.47084 * 329.99380 * 3 2 1 29 29 H 1.09003 * 109.47320 * 299.99391 * 4 3 2 30 30 H 1.08998 * 109.47637 * 59.99706 * 4 3 2 31 31 H 0.97001 * 120.00418 * 0.02562 * 15 13 11 32 32 H 0.97001 * 120.00296 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 1.4424 5 6 3.2054 3.0158 1.4424 6 7 4.5298 3.1685 1.4481 7 7 4.7711 4.4356 1.4424 8 7 3.6503 5.0699 1.4424 9 1 3.5499 6.0347 1.4425 10 7 2.6834 4.2178 1.4425 11 6 2.1388 -1.1673 -0.0055 12 8 3.3496 -1.1697 0.0874 13 6 1.3989 -2.4531 -0.1255 14 8 0.2009 -2.4480 -0.3276 15 7 2.0580 -3.6230 -0.0101 16 6 1.3813 -4.7990 -0.1193 17 1 0.3164 -4.7945 -0.2989 18 6 2.0639 -6.0107 -0.0003 19 7 3.3559 -6.0162 0.2171 20 14 1.1354 -7.6246 -0.1509 21 1 0.4944 -7.7039 -1.4880 22 1 2.0817 -8.7573 0.0128 23 1 0.0919 -7.6956 0.9033 24 1 -0.3634 -0.0940 -1.0233 25 1 -0.3634 -0.8392 0.5930 26 1 -0.3634 0.9333 0.4302 27 1 3.1499 1.1383 -0.5139 28 1 1.6084 2.0283 -0.5139 29 1 1.5000 1.8408 1.9563 30 1 3.0414 0.9508 1.9564 31 1 3.0144 -3.6270 0.1516 32 1 3.8303 -6.8582 0.3002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707564129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:17 Heat of formation + Delta-G solvation = 35.966619 kcal Electronic energy + Delta-G solvation = -19722.833223 eV Core-core repulsion = 16335.182575 eV Total energy + Delta-G solvation = -3387.650648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.107 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.50349 -41.44191 -39.19334 -37.38059 -36.20426 -35.38867 -34.71486 -33.39214 -31.65134 -28.09824 -27.58095 -26.25605 -25.56369 -23.74007 -22.60790 -20.70242 -20.15131 -19.95431 -18.34918 -18.16185 -17.71540 -16.94857 -16.83735 -16.10942 -15.79802 -15.63697 -15.08678 -14.88972 -14.54058 -14.18871 -13.94781 -13.65032 -13.51073 -13.21661 -13.12154 -12.87796 -12.51744 -12.34869 -12.24615 -12.10360 -12.07616 -11.93235 -11.58115 -11.43961 -10.22855 -9.94406 -9.77327 -8.60838 -6.05165 0.10746 0.63963 0.96733 1.42610 1.47488 1.51503 1.56431 1.77088 2.29939 2.39949 2.85006 3.16641 3.20613 3.27176 3.92392 4.00151 4.10058 4.20948 4.43234 4.47847 4.58678 4.79245 4.83223 4.98896 5.18463 5.30274 5.52468 5.66425 5.74077 6.08107 6.37343 6.80692 7.01728 7.18928 7.34182 7.85869 8.54866 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.044171 B = 0.003600 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.743363 B = 7776.207334 C = 8284.967537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.586 5.586 3 C 0.126 3.874 4 C -0.034 4.034 5 C 0.177 3.823 6 N -0.307 5.307 7 N -0.063 5.063 8 N -0.202 5.202 9 H 0.493 0.507 10 N -0.291 5.291 11 C 0.513 3.487 12 O -0.562 6.562 13 C 0.393 3.607 14 O -0.599 6.599 15 N -0.515 5.515 16 C -0.342 4.342 17 H 0.101 0.899 18 C -0.007 4.007 19 N -0.899 5.899 20 Si 1.009 2.991 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.263 1.263 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.399 0.601 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 19.195 2.350 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.319 5.319 3 C 0.002 3.998 4 C -0.076 4.076 5 C -0.106 4.106 6 N -0.179 5.179 7 N -0.058 5.058 8 N -0.053 5.053 9 H 0.352 0.648 10 N -0.144 5.144 11 C 0.298 3.702 12 O -0.441 6.441 13 C 0.178 3.822 14 O -0.489 6.489 15 N -0.150 5.150 16 C -0.472 4.472 17 H 0.119 0.881 18 C -0.211 4.211 19 N -0.537 5.537 20 Si 0.830 3.170 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.187 1.187 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.102 0.898 31 H 0.233 0.767 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.873 19.421 2.298 19.767 hybrid contribution 0.080 -0.488 0.006 0.495 sum -2.793 18.933 2.304 19.276 Atomic orbital electron populations 1.22153 0.76164 1.04109 1.03071 1.47604 1.08937 1.04104 1.71221 1.21490 0.98089 0.84441 0.95742 1.20290 1.00502 0.87594 0.99172 1.25514 0.88545 0.95048 1.01519 1.75986 1.15826 1.07369 1.18767 1.78936 1.11659 0.99795 1.15411 1.47870 1.00312 1.13267 1.43855 0.64769 1.74689 1.18429 0.99632 1.21670 1.20282 0.86896 0.86054 0.77001 1.90706 1.14988 1.87897 1.50531 1.19535 0.88063 0.85040 0.89576 1.90524 1.14541 1.86832 1.56962 1.41673 1.11496 1.04820 1.56962 1.19932 0.95209 0.83037 1.49043 0.88085 1.26521 0.96449 1.03433 0.94657 1.69556 1.09058 1.30565 1.44541 0.84767 0.77765 0.74922 0.79567 1.18918 1.19449 1.18724 0.92674 0.90784 0.87783 0.91317 0.86603 0.85979 0.89763 0.76695 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.38 9.23 127.77 1.18 3.56 16 2 N -0.59 -18.88 2.87 -849.07 -2.44 -21.32 16 3 C 0.13 3.19 5.33 86.38 0.46 3.65 16 4 C -0.03 -0.78 6.17 29.85 0.18 -0.60 16 5 C 0.18 4.10 7.62 138.55 1.06 5.15 16 6 N -0.31 -8.36 12.50 -51.26 -0.64 -9.00 16 7 N -0.06 -1.35 13.48 37.02 0.50 -0.85 16 8 N -0.20 -2.79 7.91 37.00 0.29 -2.50 16 9 H 0.49 1.58 8.96 -347.68 -3.12 -1.54 16 10 N -0.29 -5.28 12.36 -51.20 -0.63 -5.91 16 11 C 0.51 22.06 7.70 87.08 0.67 22.73 16 12 O -0.56 -26.57 16.11 -3.52 -0.06 -26.62 16 13 C 0.39 19.64 7.63 87.08 0.66 20.30 16 14 O -0.60 -30.63 12.92 -3.72 -0.05 -30.67 16 15 N -0.52 -28.05 5.24 -308.88 -1.62 -29.67 16 16 C -0.34 -19.04 9.67 84.35 0.82 -18.23 16 17 H 0.10 5.70 7.15 -2.91 -0.02 5.68 16 18 C -0.01 -0.35 5.51 85.14 0.47 0.12 16 19 N -0.90 -48.71 13.03 21.77 0.28 -48.43 16 20 Si 1.01 40.69 29.56 68.60 2.03 42.71 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 24 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 25 H 0.07 2.50 5.95 -2.39 -0.01 2.48 16 26 H 0.10 1.84 8.03 -2.39 -0.02 1.82 16 27 H 0.07 2.06 7.49 -2.38 -0.02 2.05 16 28 H 0.12 2.14 8.07 -2.39 -0.02 2.13 16 29 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.40 22.23 7.36 -92.71 -0.68 21.54 16 32 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 Total: -1.00 -71.25 291.88 0.57 -70.69 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -2.60 Total: 24.89 kcal Atomic # 6 Polarization: 31.19 SS G_CDS: 5.50 Total: 36.69 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -4.26 Total: -117.68 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -0.10 Total: -57.30 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -71.25 0.57 -70.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707564129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.652 kcal (2) G-P(sol) polarization free energy of solvation -71.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds