Wall clock time and date at job start Mon Mar 30 2020 05:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35950 * 117.00100 * 2 1 4 4 N 1.30346 * 121.63924 * 359.97438 * 3 2 1 5 5 S 1.69583 * 107.17671 * 180.02562 * 4 3 2 6 6 C 1.72029 * 95.77876 * 359.80977 * 5 4 3 7 7 C 1.35054 * 105.60134 * 0.32163 * 6 5 4 8 8 C 1.50706 * 122.64040 * 179.88588 * 7 6 5 9 9 N 1.46893 * 109.47176 * 259.72030 * 8 7 6 10 10 C 1.47439 * 111.00357 * 69.87223 * 9 8 7 11 11 C 1.54321 * 107.23713 * 123.25923 * 10 9 8 12 12 C 1.55147 * 103.01469 * 22.28151 * 11 10 9 13 13 H 1.08999 * 110.99199 * 82.44356 * 12 11 10 14 14 C 1.50706 * 110.98670 * 206.25778 * 12 11 10 15 15 H 1.07992 * 119.99974 * 118.54897 * 14 12 11 16 16 C 1.37878 * 119.99886 * 298.54550 * 14 12 11 17 17 N 1.31516 * 120.00400 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99818 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47115 * 90.00162 * 18 16 14 20 20 H 1.48507 * 109.47304 * 210.00242 * 18 16 14 21 21 H 1.48496 * 109.47434 * 330.00276 * 18 16 14 22 22 C 1.47847 * 110.99886 * 190.71703 * 9 8 7 23 23 H 1.09003 * 109.46708 * 299.99535 * 1 2 3 24 24 H 1.08999 * 109.47527 * 59.99788 * 1 2 3 25 25 H 1.08998 * 109.46959 * 180.02562 * 1 2 3 26 26 H 1.08000 * 127.20067 * 180.23735 * 6 5 4 27 27 H 1.09001 * 109.46953 * 19.71490 * 8 7 6 28 28 H 1.09000 * 109.47318 * 139.71088 * 8 7 6 29 29 H 1.09005 * 109.88764 * 242.66234 * 10 9 8 30 30 H 1.08998 * 109.88859 * 3.68936 * 10 9 8 31 31 H 1.08999 * 110.70760 * 140.66373 * 11 10 9 32 32 H 1.09002 * 110.70457 * 263.90176 * 11 10 9 33 33 H 0.96992 * 120.00238 * 179.97438 * 17 16 14 34 34 H 1.08995 * 110.37157 * 332.46184 * 22 9 8 35 35 H 1.08996 * 110.37604 * 94.80766 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 7 1.3679 2.3244 -0.0005 5 16 2.4908 3.5952 -0.0010 6 6 3.8880 2.5917 0.0051 7 6 3.4243 1.3233 0.0000 8 6 4.3371 0.1241 0.0004 9 7 4.4423 -0.4117 -1.3633 10 6 5.2007 0.5050 -2.2341 11 6 6.3847 -0.2939 -2.8183 12 6 5.9078 -1.7652 -2.6958 13 1 5.2589 -2.0359 -3.5287 14 6 7.0807 -2.7066 -2.6000 15 1 7.2106 -3.3195 -1.7204 16 6 7.9878 -2.7854 -3.6353 17 7 7.8299 -2.0387 -4.7063 18 14 9.4412 -3.9528 -3.5168 19 1 9.0619 -5.2742 -4.0782 20 1 10.5852 -3.3987 -4.2846 21 1 9.8322 -4.1137 -2.0932 22 6 5.1160 -1.7277 -1.3649 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 4.9202 2.9095 0.0104 27 1 5.3256 0.4200 0.3517 28 1 3.9308 -0.6416 0.6614 29 1 4.5614 0.8637 -3.0409 30 1 5.5709 1.3486 -1.6516 31 1 6.5512 -0.0283 -3.8622 32 1 7.2874 -0.1311 -2.2294 33 1 8.4682 -2.0939 -5.4345 34 1 5.7958 -1.8071 -0.5166 35 1 4.3798 -2.5310 -1.3388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712036673.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:41 Heat of formation + Delta-G solvation = 11.664870 kcal Electronic energy + Delta-G solvation = -18341.284132 eV Core-core repulsion = 15466.580144 eV Total energy + Delta-G solvation = -2874.703987 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25400 -38.08855 -36.57110 -33.36754 -31.85705 -29.72205 -28.25067 -27.86053 -25.77815 -24.09359 -22.91397 -20.24876 -19.88235 -19.58875 -17.91138 -16.97078 -16.39121 -16.08081 -15.15177 -14.90066 -14.68038 -14.40628 -14.00983 -13.35412 -13.15195 -12.59985 -12.39293 -12.18532 -11.99579 -11.60340 -11.23537 -11.10840 -11.02468 -10.86712 -10.78547 -10.62161 -10.47481 -10.19242 -9.64954 -9.52866 -9.22186 -8.84034 -8.39719 -8.17668 -7.58525 -6.02550 -4.06135 0.73579 1.44960 1.74829 2.51767 3.26631 3.29720 3.36565 3.39310 4.41671 4.68291 4.81994 5.08398 5.15246 5.22757 5.30885 5.40535 5.49555 5.57596 5.78837 5.87165 5.99282 6.16631 6.24591 6.31402 6.50525 6.54408 6.86020 7.14202 7.18519 7.20084 7.65213 7.70771 7.76386 7.88464 8.02402 8.42146 8.96060 9.58275 11.07014 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.004365 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.254339 B = 6413.127521 C = 6848.301247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.278 6.278 3 C 0.333 3.667 4 N -0.538 5.538 5 S 0.261 5.739 6 C -0.185 4.185 7 C -0.146 4.146 8 C 0.122 3.878 9 N -0.526 5.526 10 C 0.040 3.960 11 C -0.116 4.116 12 C 0.049 3.951 13 H 0.036 0.964 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.048 3.952 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.187 0.813 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 9.271 9.964 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.183 6.183 3 C 0.118 3.882 4 N -0.378 5.378 5 S 0.411 5.589 6 C -0.332 4.332 7 C -0.164 4.164 8 C -0.009 4.009 9 N -0.250 5.250 10 C -0.088 4.088 11 C -0.155 4.155 12 C 0.030 3.970 13 H 0.054 0.946 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.078 4.078 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.118 0.882 26 H 0.204 0.796 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.765 10.595 9.603 18.518 hybrid contribution 2.510 -1.833 0.237 3.117 sum -9.255 8.762 9.841 16.102 Atomic orbital electron populations 1.22938 0.77467 1.03412 1.02034 1.86402 1.22159 1.22213 1.87538 1.19989 0.89787 0.85018 0.93382 1.76525 1.26147 1.01148 1.34001 1.83748 0.90720 1.13458 1.70990 1.26319 1.06157 0.96688 1.04082 1.19250 0.91773 0.96717 1.08685 1.20676 0.95183 0.92339 0.92749 1.63605 1.50716 1.03781 1.06902 1.22917 0.95436 0.94542 0.95883 1.22681 0.94577 0.97478 1.00776 1.19729 0.93919 0.92233 0.91131 0.94579 1.21047 1.08581 1.22686 1.03033 0.92571 1.24961 0.97889 0.95643 0.95282 1.69964 1.36530 1.39422 1.06732 0.86621 0.82289 0.81188 0.78048 1.20648 1.21294 1.19959 1.23170 0.95535 0.88701 1.00425 0.92640 0.92333 0.88185 0.79560 0.93799 0.89959 0.92271 0.94706 0.90879 0.93411 0.93044 0.94517 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.47 101.05 1.06 1.47 16 2 O -0.28 -4.20 10.13 -19.58 -0.20 -4.40 16 3 C 0.33 5.09 7.40 -18.17 -0.13 4.96 16 4 N -0.54 -7.87 11.14 28.92 0.32 -7.55 16 5 S 0.26 3.09 23.71 -107.50 -2.55 0.55 16 6 C -0.18 -2.26 10.32 29.60 0.31 -1.95 16 7 C -0.15 -2.15 4.88 -105.74 -0.52 -2.67 16 8 C 0.12 1.95 4.58 -4.98 -0.02 1.92 16 9 N -0.53 -10.07 5.15 -232.69 -1.20 -11.27 16 10 C 0.04 0.78 6.41 -2.84 -0.02 0.76 16 11 C -0.12 -2.70 5.64 -24.90 -0.14 -2.84 16 12 C 0.05 1.22 2.96 -89.63 -0.27 0.96 16 13 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.51 -13.99 8.55 -34.44 -0.29 -14.28 16 15 H 0.06 1.50 7.79 -52.49 -0.41 1.09 16 16 C 0.06 1.76 5.34 -17.82 -0.10 1.67 16 17 N -0.89 -25.32 12.12 55.43 0.67 -24.65 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.05 1.02 6.12 -2.30 -0.01 1.01 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.19 1.82 8.02 -52.49 -0.42 1.40 16 27 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 28 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.03 0.60 6.58 -51.93 -0.34 0.26 16 31 H 0.07 1.83 7.54 -51.93 -0.39 1.44 16 32 H 0.05 1.14 8.03 -51.93 -0.42 0.72 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.04 0.76 7.70 -51.93 -0.40 0.36 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -29.66 304.47 -8.40 -38.06 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.88 Total: -2.38 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.14 Total: -8.99 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.20 Total: -43.47 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.55 Total: 0.55 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.66 -8.40 -38.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712036673.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.721 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds