Wall clock time and date at job start Mon Mar 30 2020 05:31:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35950 * 117.00100 * 2 1
4 4 N 1.30346 * 121.63924 * 359.97438 * 3 2 1
5 5 S 1.69583 * 107.17671 * 180.02562 * 4 3 2
6 6 C 1.72029 * 95.77876 * 359.80977 * 5 4 3
7 7 C 1.35054 * 105.60134 * 0.32163 * 6 5 4
8 8 C 1.50706 * 122.64040 * 179.88588 * 7 6 5
9 9 N 1.46893 * 109.47176 * 259.72030 * 8 7 6
10 10 C 1.47439 * 111.00357 * 69.87223 * 9 8 7
11 11 C 1.54321 * 107.23713 * 123.25923 * 10 9 8
12 12 C 1.55147 * 103.01469 * 22.28151 * 11 10 9
13 13 H 1.08999 * 110.99199 * 82.44356 * 12 11 10
14 14 C 1.50706 * 110.98670 * 206.25778 * 12 11 10
15 15 H 1.07992 * 119.99974 * 118.54897 * 14 12 11
16 16 C 1.37878 * 119.99886 * 298.54550 * 14 12 11
17 17 N 1.31516 * 120.00400 * 0.02562 * 16 14 12
18 18 Si 1.86798 * 119.99818 * 180.02562 * 16 14 12
19 19 H 1.48499 * 109.47115 * 90.00162 * 18 16 14
20 20 H 1.48507 * 109.47304 * 210.00242 * 18 16 14
21 21 H 1.48496 * 109.47434 * 330.00276 * 18 16 14
22 22 C 1.47847 * 110.99886 * 190.71703 * 9 8 7
23 23 H 1.09003 * 109.46708 * 299.99535 * 1 2 3
24 24 H 1.08999 * 109.47527 * 59.99788 * 1 2 3
25 25 H 1.08998 * 109.46959 * 180.02562 * 1 2 3
26 26 H 1.08000 * 127.20067 * 180.23735 * 6 5 4
27 27 H 1.09001 * 109.46953 * 19.71490 * 8 7 6
28 28 H 1.09000 * 109.47318 * 139.71088 * 8 7 6
29 29 H 1.09005 * 109.88764 * 242.66234 * 10 9 8
30 30 H 1.08998 * 109.88859 * 3.68936 * 10 9 8
31 31 H 1.08999 * 110.70760 * 140.66373 * 11 10 9
32 32 H 1.09002 * 110.70457 * 263.90176 * 11 10 9
33 33 H 0.96992 * 120.00238 * 179.97438 * 17 16 14
34 34 H 1.08995 * 110.37157 * 332.46184 * 22 9 8
35 35 H 1.08996 * 110.37604 * 94.80766 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0462 1.2113 0.0000
4 7 1.3679 2.3244 -0.0005
5 16 2.4908 3.5952 -0.0010
6 6 3.8880 2.5917 0.0051
7 6 3.4243 1.3233 0.0000
8 6 4.3371 0.1241 0.0004
9 7 4.4423 -0.4117 -1.3633
10 6 5.2007 0.5050 -2.2341
11 6 6.3847 -0.2939 -2.8183
12 6 5.9078 -1.7652 -2.6958
13 1 5.2589 -2.0359 -3.5287
14 6 7.0807 -2.7066 -2.6000
15 1 7.2106 -3.3195 -1.7204
16 6 7.9878 -2.7854 -3.6353
17 7 7.8299 -2.0387 -4.7063
18 14 9.4412 -3.9528 -3.5168
19 1 9.0619 -5.2742 -4.0782
20 1 10.5852 -3.3987 -4.2846
21 1 9.8322 -4.1137 -2.0932
22 6 5.1160 -1.7277 -1.3649
23 1 -0.3633 0.5138 0.8901
24 1 -0.3634 0.5138 -0.8899
25 1 -0.3633 -1.0277 0.0005
26 1 4.9202 2.9095 0.0104
27 1 5.3256 0.4200 0.3517
28 1 3.9308 -0.6416 0.6614
29 1 4.5614 0.8637 -3.0409
30 1 5.5709 1.3486 -1.6516
31 1 6.5512 -0.0283 -3.8622
32 1 7.2874 -0.1311 -2.2294
33 1 8.4682 -2.0939 -5.4345
34 1 5.7958 -1.8071 -0.5166
35 1 4.3798 -2.5310 -1.3388
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000712036673.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:31:41
Heat of formation + Delta-G solvation = 11.664870 kcal
Electronic energy + Delta-G solvation = -18341.284132 eV
Core-core repulsion = 15466.580144 eV
Total energy + Delta-G solvation = -2874.703987 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.25400 -38.08855 -36.57110 -33.36754 -31.85705 -29.72205 -28.25067 -27.86053
-25.77815 -24.09359 -22.91397 -20.24876 -19.88235 -19.58875 -17.91138 -16.97078
-16.39121 -16.08081 -15.15177 -14.90066 -14.68038 -14.40628 -14.00983 -13.35412
-13.15195 -12.59985 -12.39293 -12.18532 -11.99579 -11.60340 -11.23537 -11.10840
-11.02468 -10.86712 -10.78547 -10.62161 -10.47481 -10.19242 -9.64954 -9.52866
-9.22186 -8.84034 -8.39719 -8.17668 -7.58525 -6.02550 -4.06135 0.73579
1.44960 1.74829 2.51767 3.26631 3.29720 3.36565 3.39310 4.41671
4.68291 4.81994 5.08398 5.15246 5.22757 5.30885 5.40535 5.49555
5.57596 5.78837 5.87165 5.99282 6.16631 6.24591 6.31402 6.50525
6.54408 6.86020 7.14202 7.18519 7.20084 7.65213 7.70771 7.76386
7.88464 8.02402 8.42146 8.96060 9.58275 11.07014
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.034893 B = 0.004365 C = 0.004088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 802.254339 B = 6413.127521 C = 6848.301247
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.278 6.278
3 C 0.333 3.667
4 N -0.538 5.538
5 S 0.261 5.739
6 C -0.185 4.185
7 C -0.146 4.146
8 C 0.122 3.878
9 N -0.526 5.526
10 C 0.040 3.960
11 C -0.116 4.116
12 C 0.049 3.951
13 H 0.036 0.964
14 C -0.515 4.515
15 H 0.056 0.944
16 C 0.064 3.936
17 N -0.888 5.888
18 Si 0.891 3.109
19 H -0.280 1.280
20 H -0.287 1.287
21 H -0.275 1.275
22 C 0.048 3.952
23 H 0.055 0.945
24 H 0.058 0.942
25 H 0.100 0.900
26 H 0.187 0.813
27 H 0.044 0.956
28 H 0.082 0.918
29 H 0.059 0.941
30 H 0.035 0.965
31 H 0.073 0.927
32 H 0.047 0.953
33 H 0.260 0.740
34 H 0.036 0.964
35 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.999 9.271 9.964 16.888
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.183 6.183
3 C 0.118 3.882
4 N -0.378 5.378
5 S 0.411 5.589
6 C -0.332 4.332
7 C -0.164 4.164
8 C -0.009 4.009
9 N -0.250 5.250
10 C -0.088 4.088
11 C -0.155 4.155
12 C 0.030 3.970
13 H 0.054 0.946
14 C -0.553 4.553
15 H 0.074 0.926
16 C -0.138 4.138
17 N -0.526 5.526
18 Si 0.719 3.281
19 H -0.206 1.206
20 H -0.213 1.213
21 H -0.200 1.200
22 C -0.078 4.078
23 H 0.074 0.926
24 H 0.077 0.923
25 H 0.118 0.882
26 H 0.204 0.796
27 H 0.062 0.938
28 H 0.100 0.900
29 H 0.077 0.923
30 H 0.053 0.947
31 H 0.091 0.909
32 H 0.066 0.934
33 H 0.070 0.930
34 H 0.055 0.945
35 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -11.765 10.595 9.603 18.518
hybrid contribution 2.510 -1.833 0.237 3.117
sum -9.255 8.762 9.841 16.102
Atomic orbital electron populations
1.22938 0.77467 1.03412 1.02034 1.86402 1.22159 1.22213 1.87538
1.19989 0.89787 0.85018 0.93382 1.76525 1.26147 1.01148 1.34001
1.83748 0.90720 1.13458 1.70990 1.26319 1.06157 0.96688 1.04082
1.19250 0.91773 0.96717 1.08685 1.20676 0.95183 0.92339 0.92749
1.63605 1.50716 1.03781 1.06902 1.22917 0.95436 0.94542 0.95883
1.22681 0.94577 0.97478 1.00776 1.19729 0.93919 0.92233 0.91131
0.94579 1.21047 1.08581 1.22686 1.03033 0.92571 1.24961 0.97889
0.95643 0.95282 1.69964 1.36530 1.39422 1.06732 0.86621 0.82289
0.81188 0.78048 1.20648 1.21294 1.19959 1.23170 0.95535 0.88701
1.00425 0.92640 0.92333 0.88185 0.79560 0.93799 0.89959 0.92271
0.94706 0.90879 0.93411 0.93044 0.94517 0.91900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.41 10.47 101.05 1.06 1.47 16
2 O -0.28 -4.20 10.13 -19.58 -0.20 -4.40 16
3 C 0.33 5.09 7.40 -18.17 -0.13 4.96 16
4 N -0.54 -7.87 11.14 28.92 0.32 -7.55 16
5 S 0.26 3.09 23.71 -107.50 -2.55 0.55 16
6 C -0.18 -2.26 10.32 29.60 0.31 -1.95 16
7 C -0.15 -2.15 4.88 -105.74 -0.52 -2.67 16
8 C 0.12 1.95 4.58 -4.98 -0.02 1.92 16
9 N -0.53 -10.07 5.15 -232.69 -1.20 -11.27 16
10 C 0.04 0.78 6.41 -2.84 -0.02 0.76 16
11 C -0.12 -2.70 5.64 -24.90 -0.14 -2.84 16
12 C 0.05 1.22 2.96 -89.63 -0.27 0.96 16
13 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16
14 C -0.51 -13.99 8.55 -34.44 -0.29 -14.28 16
15 H 0.06 1.50 7.79 -52.49 -0.41 1.09 16
16 C 0.06 1.76 5.34 -17.82 -0.10 1.67 16
17 N -0.89 -25.32 12.12 55.43 0.67 -24.65 16
18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16
19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16
20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
22 C 0.05 1.02 6.12 -2.30 -0.01 1.01 16
23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16
26 H 0.19 1.82 8.02 -52.49 -0.42 1.40 16
27 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16
28 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16
29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
30 H 0.03 0.60 6.58 -51.93 -0.34 0.26 16
31 H 0.07 1.83 7.54 -51.93 -0.39 1.44 16
32 H 0.05 1.14 8.03 -51.93 -0.42 0.72 16
33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
34 H 0.04 0.76 7.70 -51.93 -0.40 0.36 16
35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
LS Contribution 304.47 15.07 4.59 4.59
Total: -1.00 -29.66 304.47 -8.40 -38.06
By element:
Atomic # 1 Polarization: 2.50 SS G_CDS: -4.88 Total: -2.38 kcal
Atomic # 6 Polarization: -8.86 SS G_CDS: -0.14 Total: -8.99 kcal
Atomic # 7 Polarization: -43.27 SS G_CDS: -0.20 Total: -43.47 kcal
Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.40 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal
Atomic # 16 Polarization: 3.09 SS G_CDS: -2.55 Total: 0.55 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -29.66 -8.40 -38.06 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000712036673.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.721 kcal
(2) G-P(sol) polarization free energy of solvation -29.659 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.062 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds