Wall clock time and date at job start Mon Mar 30 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40308 * 126.64565 * 2 1 4 4 C 1.35169 * 107.12179 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.61036 * 180.02562 * 4 3 2 6 6 O 1.42895 * 109.47239 * 89.99539 * 5 4 3 7 7 O 1.33909 * 108.78438 * 359.76881 * 4 3 2 8 8 C 1.34937 * 109.38036 * 0.38075 * 7 4 3 9 9 C 1.46471 * 125.99994 * 179.88655 * 8 7 4 10 10 O 1.21623 * 120.00284 * 179.68895 * 9 8 7 11 11 O 1.34904 * 119.99769 * 359.68971 * 9 8 7 12 12 C 1.45196 * 116.99901 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47070 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47242 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99992 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00322 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99714 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47381 * 90.00067 * 19 17 15 21 21 H 1.48507 * 109.46695 * 209.99596 * 19 17 15 22 22 H 1.48500 * 109.47578 * 329.99398 * 19 17 15 23 23 H 1.09000 * 109.47794 * 269.96173 * 1 2 3 24 24 H 1.09005 * 109.47303 * 29.96096 * 1 2 3 25 25 H 1.09006 * 109.47304 * 149.95558 * 1 2 3 26 26 H 1.08000 * 126.44053 * 0.05100 * 3 2 1 27 27 H 1.09003 * 109.47407 * 209.99958 * 5 4 3 28 28 H 1.09000 * 109.46661 * 329.99672 * 5 4 3 29 29 H 0.96696 * 114.00546 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47465 * 300.00088 * 12 11 9 31 31 H 1.08999 * 109.47008 * 60.00097 * 12 11 9 32 32 H 1.08998 * 109.47592 * 300.00297 * 13 12 11 33 33 H 1.09007 * 109.46935 * 60.00470 * 13 12 11 34 34 H 1.09004 * 109.47100 * 299.99832 * 14 13 12 35 35 H 1.08999 * 109.47046 * 60.00020 * 14 13 12 36 36 H 0.96998 * 120.00470 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6184 0.6740 -0.0006 5 6 4.8549 1.5355 -0.0002 6 8 5.2460 1.8070 1.3471 7 8 3.6011 -0.6650 0.0042 8 6 2.3226 -1.0963 -0.0006 9 6 1.8856 -2.4943 0.0000 10 8 0.6989 -2.7605 0.0011 11 8 2.7995 -3.4866 -0.0007 12 6 2.2944 -4.8479 0.0005 13 6 3.4694 -5.8278 -0.0011 14 6 2.9372 -7.2622 -0.0005 15 6 4.0946 -8.2275 -0.0014 16 1 5.1082 -7.8550 -0.0020 17 6 3.8593 -9.5860 -0.0006 18 7 4.8692 -10.4284 -0.0019 19 14 2.1058 -10.2301 0.0011 20 1 1.6401 -10.4016 -1.3985 21 1 2.0599 -11.5387 0.7018 22 1 1.2235 -9.2625 0.7014 23 1 -0.3635 -0.0007 1.0276 24 1 -0.3634 0.8904 -0.5132 25 1 -0.3634 -0.8896 -0.5145 26 1 2.0302 2.1590 0.0008 27 1 5.6617 1.0134 -0.5146 28 1 4.6441 2.4737 -0.5134 29 1 6.0367 2.3583 1.4237 30 1 1.6873 -5.0095 0.8912 31 1 1.6852 -5.0102 -0.8887 32 1 4.0762 -5.6662 -0.8920 33 1 4.0789 -5.6657 0.8880 34 1 2.3303 -7.4242 0.8903 35 1 2.3279 -7.4241 -0.8897 36 1 4.7037 -11.3841 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801425156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:09 Heat of formation + Delta-G solvation = -132.436581 kcal Electronic energy + Delta-G solvation = -19507.030256 eV Core-core repulsion = 16151.031939 eV Total energy + Delta-G solvation = -3355.998317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.05135 -40.09812 -37.33646 -36.71714 -34.42147 -34.04123 -31.95220 -31.58572 -28.37969 -27.73711 -26.74980 -23.42136 -22.00076 -21.72309 -20.38404 -19.82280 -18.22386 -18.15418 -17.06521 -16.82079 -16.48623 -15.93430 -15.79416 -15.14017 -14.26629 -14.13670 -14.07339 -13.46088 -13.36468 -13.22008 -12.97825 -12.73784 -12.59850 -12.40012 -11.97283 -11.93244 -11.07500 -10.98933 -10.79633 -10.63907 -10.47971 -10.04027 -9.98430 -9.82271 -9.72927 -9.24499 -8.93013 -8.56278 -6.06375 -4.05478 0.59598 1.84841 2.15936 2.77127 2.85904 3.30431 3.37989 3.41466 3.87388 4.34168 4.41835 4.43504 4.58039 4.72369 4.81273 5.06398 5.21136 5.26787 5.39888 5.43744 5.44671 5.46443 5.70127 5.79287 5.84780 6.08018 6.26017 6.38856 6.57333 6.63602 6.78094 7.04967 7.21335 7.32654 7.67809 7.76132 8.50497 8.98067 9.54969 11.06840 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.003316 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.355795 B = 8441.919369 C = 9315.612499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.081 4.081 3 C -0.198 4.198 4 C 0.021 3.979 5 C 0.154 3.846 6 O -0.564 6.564 7 O -0.139 6.139 8 C -0.054 4.054 9 C 0.548 3.452 10 O -0.488 6.488 11 O -0.344 6.344 12 C 0.066 3.934 13 C -0.102 4.102 14 C -0.010 4.010 15 C -0.522 4.522 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.161 0.839 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.390 0.610 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.015 0.985 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 27.765 -0.957 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 C -0.217 4.217 4 C -0.032 4.032 5 C 0.077 3.923 6 O -0.371 6.371 7 O -0.034 6.034 8 C -0.105 4.105 9 C 0.393 3.607 10 O -0.378 6.378 11 O -0.260 6.260 12 C -0.007 4.007 13 C -0.140 4.140 14 C -0.047 4.047 15 C -0.560 4.560 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.178 0.822 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.239 0.761 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.729 26.857 -0.829 27.283 hybrid contribution -0.481 -0.137 -0.139 0.519 sum -5.210 26.720 -0.968 27.241 Atomic orbital electron populations 1.20487 0.87698 1.03904 1.03291 1.20646 0.97800 0.90477 0.99364 1.21489 0.91148 1.00194 1.08902 1.22397 0.96786 0.80850 1.03131 1.20371 0.91338 0.95690 0.84935 1.86560 1.50419 1.74913 1.25244 1.84127 1.28050 1.21513 1.69719 1.20729 0.81681 0.92101 1.15946 1.19139 0.84217 0.83719 0.73666 1.90902 1.16993 1.83255 1.46638 1.86682 1.39041 1.17405 1.82877 1.23614 0.99157 0.75513 1.02410 1.21581 0.95553 0.93843 1.03015 1.19522 0.97613 0.90885 0.96723 1.21057 0.93512 0.90216 1.51197 0.90781 1.25016 0.97026 0.96917 0.94456 1.69906 1.30708 1.02569 1.50858 0.86778 0.85537 0.78403 0.78591 1.20199 1.21283 1.18944 0.90370 0.91022 0.89358 0.82176 0.90955 0.89636 0.76101 0.91120 0.91138 0.91434 0.91385 0.96208 0.96647 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.81 36.01 0.35 -0.62 16 2 C -0.08 -0.98 6.20 -104.42 -0.65 -1.62 16 3 C -0.20 -1.97 10.72 -39.90 -0.43 -2.40 16 4 C 0.02 0.23 6.94 -35.40 -0.25 -0.02 16 5 C 0.15 1.02 7.57 36.01 0.27 1.30 16 6 O -0.56 -4.26 13.64 -35.23 -0.48 -4.74 16 7 O -0.14 -1.99 10.67 4.75 0.05 -1.94 16 8 C -0.05 -0.79 7.18 -36.85 -0.26 -1.06 16 9 C 0.55 9.09 7.93 34.05 0.27 9.36 16 10 O -0.49 -8.45 14.54 -19.36 -0.28 -8.73 16 11 O -0.34 -6.13 10.23 -42.49 -0.43 -6.56 16 12 C 0.07 1.18 5.48 37.16 0.20 1.39 16 13 C -0.10 -2.09 5.53 -26.73 -0.15 -2.24 16 14 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 15 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 16 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 19 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 1.02 6.45 -51.93 -0.33 0.68 16 26 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.39 0.77 9.12 45.56 0.42 1.18 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 34 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 35 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -34.81 317.63 -5.51 -40.32 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -4.08 Total: -3.36 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.18 Total: -9.73 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 0.77 Total: -27.19 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -1.15 Total: -21.97 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.81 -5.51 -40.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801425156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.114 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds