Wall clock time and date at job start Mon Mar 30 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47113 * 2 1 4 4 N 1.28511 * 124.43567 * 90.02514 * 3 2 1 5 5 C 1.31120 * 109.07627 * 180.02562 * 4 3 2 6 6 C 1.40976 * 105.76877 * 359.97438 * 5 4 3 7 7 C 1.47675 * 127.24544 * 180.02562 * 6 5 4 8 8 O 1.21483 * 120.00024 * 0.02562 * 7 6 5 9 9 O 1.34705 * 120.00194 * 179.72385 * 7 6 5 10 10 C 1.45196 * 117.00323 * 180.27311 * 9 7 6 11 11 C 1.50709 * 109.47429 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99376 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99802 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99581 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00079 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99722 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00093 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99739 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47140 * 60.00002 * 18 16 14 20 20 H 1.48501 * 109.46843 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46999 * 299.99874 * 18 16 14 22 22 N 1.28581 * 124.43639 * 270.33442 * 3 2 1 23 23 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47477 * 300.00020 * 1 2 3 25 25 H 1.09001 * 109.46891 * 60.00626 * 1 2 3 26 26 H 1.09003 * 109.47192 * 239.99676 * 2 1 3 27 27 H 1.09000 * 109.46729 * 119.99904 * 2 1 3 28 28 H 1.08001 * 127.11804 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47461 * 300.00612 * 10 9 7 30 30 H 1.09010 * 109.46796 * 60.00402 * 10 9 7 31 31 H 0.96999 * 120.00243 * 0.02562 * 13 11 10 32 32 H 0.97004 * 119.99735 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2610 2.0662 1.0599 5 6 2.6818 3.2585 0.7126 6 6 2.6848 3.2681 -0.6971 7 6 3.0785 4.3825 -1.5825 8 8 3.4513 5.4354 -1.1046 9 8 3.0301 4.2297 -2.9199 10 6 3.4373 5.3649 -3.7284 11 6 3.3172 5.0108 -5.1884 12 8 2.9263 3.9102 -5.5152 13 7 3.6441 5.9173 -6.1307 14 6 3.5343 5.5953 -7.4588 15 1 3.1863 4.6153 -7.7499 16 6 3.8718 6.5296 -8.4303 17 7 4.2958 7.7219 -8.0761 18 14 3.7229 6.0907 -10.2400 19 1 2.3130 5.7434 -10.5507 20 1 4.1412 7.2512 -11.0668 21 1 4.5969 4.9285 -10.5409 22 7 2.2549 2.0688 -1.0605 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9678 4.0659 1.3704 29 1 2.7950 6.2173 -3.5076 30 1 4.4721 5.6209 -3.5002 31 1 3.9570 6.7974 -5.8692 32 1 4.5318 8.3740 -8.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815429090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:43 Heat of formation + Delta-G solvation = -7.867826 kcal Electronic energy + Delta-G solvation = -19321.742644 eV Core-core repulsion = 15899.898441 eV Total energy + Delta-G solvation = -3421.844203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.88256 -40.11340 -38.09217 -36.13148 -35.16438 -33.97468 -32.90360 -31.36058 -30.81850 -28.48908 -25.69033 -24.62625 -23.91288 -21.80080 -20.90383 -19.55759 -18.07201 -17.91873 -17.50975 -16.97678 -16.35358 -16.11682 -15.57778 -15.26151 -14.58663 -14.46495 -14.02346 -13.96228 -13.22689 -13.01344 -12.62782 -12.30700 -12.14672 -12.03381 -11.82022 -11.59777 -11.16750 -11.09650 -10.72908 -10.64476 -10.47039 -10.41973 -10.27014 -9.71918 -9.57000 -8.49161 -8.05600 -6.47502 -3.89442 1.04523 1.69346 1.82761 2.64101 2.96371 3.17484 3.24361 3.29109 3.71238 3.76886 4.13598 4.40799 4.43505 4.63949 4.69606 4.78804 5.05465 5.14822 5.17270 5.26453 5.45972 5.52599 5.63134 5.71100 5.74040 6.06906 6.28363 6.50403 7.50075 7.70260 7.94497 7.99445 8.51523 9.09649 9.41950 9.92342 10.69746 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.034181 B = 0.003445 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.978649 B = 8124.948552 C = 8849.138390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.131 3.869 3 N -0.139 5.139 4 N -0.293 5.293 5 C 0.041 3.959 6 C -0.031 4.031 7 C 0.557 3.443 8 O -0.499 6.499 9 O -0.308 6.308 10 C 0.060 3.940 11 C 0.439 3.561 12 O -0.573 6.573 13 N -0.553 5.553 14 C -0.303 4.303 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.212 5.212 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.212 0.788 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.395 0.605 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -10.094 16.919 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 N -0.044 5.044 4 N -0.131 5.131 5 C -0.142 4.142 6 C -0.192 4.192 7 C 0.398 3.602 8 O -0.386 6.386 9 O -0.221 6.221 10 C -0.018 4.018 11 C 0.224 3.776 12 O -0.456 6.456 13 N -0.190 5.190 14 C -0.432 4.432 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.538 5.538 18 Si 0.761 3.239 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 N -0.061 5.061 23 H 0.107 0.893 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.228 0.772 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.229 0.771 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.739 -11.613 16.660 20.854 hybrid contribution 0.519 1.465 -0.701 1.705 sum -4.220 -10.148 15.959 19.377 Atomic orbital electron populations 1.22206 0.92714 1.04192 1.03987 1.22175 0.96401 0.73799 1.06374 1.48411 1.43181 1.13600 0.99161 1.73996 1.18011 1.05316 1.15795 1.24857 1.01098 0.95408 0.92871 1.21898 1.11067 0.92964 0.93261 1.19292 0.74528 0.84694 0.81678 1.90868 1.43954 1.26922 1.76832 1.86676 1.77267 1.42027 1.16116 1.22856 1.01621 0.86731 0.90560 1.19287 0.86089 0.86861 0.85403 1.90576 1.50892 1.22384 1.81798 1.41681 1.57646 1.14172 1.05540 1.19681 1.42251 1.01069 0.80168 0.87672 1.25301 0.96662 0.94939 1.00818 1.69608 1.43976 1.04976 1.35286 0.85860 0.79011 0.77852 0.81173 1.19763 1.20886 1.19769 1.74705 1.12483 1.04114 1.14830 0.89291 0.91345 0.90971 0.86705 0.86914 0.77155 0.89179 0.89168 0.77129 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 2 C 0.13 0.90 7.24 -4.04 -0.03 0.87 16 3 N -0.14 -1.63 3.94 -10.61 -0.04 -1.68 16 4 N -0.29 -3.46 12.00 30.91 0.37 -3.09 16 5 C 0.04 0.50 12.04 -16.82 -0.20 0.29 16 6 C -0.03 -0.47 7.26 -82.70 -0.60 -1.07 16 7 C 0.56 9.60 7.97 34.58 0.28 9.88 16 8 O -0.50 -8.75 16.74 -19.25 -0.32 -9.07 16 9 O -0.31 -6.15 9.76 -47.18 -0.46 -6.61 16 10 C 0.06 1.16 5.95 36.01 0.21 1.38 16 11 C 0.44 10.77 7.86 -10.98 -0.09 10.68 16 12 O -0.57 -16.30 16.08 -14.11 -0.23 -16.52 16 13 N -0.55 -14.09 5.29 -10.96 -0.06 -14.15 16 14 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 15 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 18 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 N -0.21 -3.19 12.10 33.41 0.40 -2.79 16 23 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.21 1.86 8.06 -52.49 -0.42 1.43 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 31 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 302.00 15.07 4.55 4.55 Total: -1.00 -34.50 302.00 -3.59 -38.09 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.21 Total: 5.53 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -0.29 Total: 13.40 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 1.40 Total: -45.16 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.01 Total: -32.21 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.50 -3.59 -38.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815429090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.222 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds