Wall clock time and date at job start Mon Mar 30 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47113 * 2 1 4 4 N 1.28511 * 124.43567 * 90.02514 * 3 2 1 5 5 C 1.31120 * 109.07627 * 180.02562 * 4 3 2 6 6 C 1.40976 * 105.76877 * 359.97438 * 5 4 3 7 7 C 1.47675 * 127.24544 * 180.02562 * 6 5 4 8 8 O 1.21483 * 120.00024 * 0.02562 * 7 6 5 9 9 O 1.34705 * 120.00194 * 179.72385 * 7 6 5 10 10 C 1.45196 * 117.00323 * 180.27311 * 9 7 6 11 11 C 1.50709 * 109.47429 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99376 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99802 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99581 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00079 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99722 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00093 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99739 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47140 * 60.00002 * 18 16 14 20 20 H 1.48501 * 109.46843 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46999 * 299.99874 * 18 16 14 22 22 N 1.28581 * 124.43639 * 270.33442 * 3 2 1 23 23 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47477 * 300.00020 * 1 2 3 25 25 H 1.09001 * 109.46891 * 60.00626 * 1 2 3 26 26 H 1.09003 * 109.47192 * 239.99676 * 2 1 3 27 27 H 1.09000 * 109.46729 * 119.99904 * 2 1 3 28 28 H 1.08001 * 127.11804 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47461 * 300.00612 * 10 9 7 30 30 H 1.09010 * 109.46796 * 60.00402 * 10 9 7 31 31 H 0.96999 * 120.00243 * 0.02562 * 13 11 10 32 32 H 0.97004 * 119.99735 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2610 2.0662 1.0599 5 6 2.6818 3.2585 0.7126 6 6 2.6848 3.2681 -0.6971 7 6 3.0785 4.3825 -1.5825 8 8 3.4513 5.4354 -1.1046 9 8 3.0301 4.2297 -2.9199 10 6 3.4373 5.3649 -3.7284 11 6 3.3172 5.0108 -5.1884 12 8 2.9263 3.9102 -5.5152 13 7 3.6441 5.9173 -6.1307 14 6 3.5343 5.5953 -7.4588 15 1 3.1863 4.6153 -7.7499 16 6 3.8718 6.5296 -8.4303 17 7 4.2958 7.7219 -8.0761 18 14 3.7229 6.0907 -10.2400 19 1 2.3130 5.7434 -10.5507 20 1 4.1412 7.2512 -11.0668 21 1 4.5969 4.9285 -10.5409 22 7 2.2549 2.0688 -1.0605 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9678 4.0659 1.3704 29 1 2.7950 6.2173 -3.5076 30 1 4.4721 5.6209 -3.5002 31 1 3.9570 6.7974 -5.8692 32 1 4.5318 8.3740 -8.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815429090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:43 Heat of formation + Delta-G solvation = -32.989689 kcal Electronic energy + Delta-G solvation = -19322.832010 eV Core-core repulsion = 15899.898441 eV Total energy + Delta-G solvation = -3422.933569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.85414 -41.55187 -40.01075 -37.60475 -36.03646 -35.90362 -33.91809 -33.41564 -31.66022 -30.10748 -27.05096 -26.11386 -24.95295 -22.67956 -22.13028 -21.44072 -20.07744 -19.14929 -18.59320 -18.12386 -17.80156 -17.44355 -17.28952 -16.50596 -16.04948 -15.79408 -15.70100 -15.11554 -14.75235 -14.08369 -13.75643 -13.67412 -13.55157 -13.21198 -13.06606 -12.93465 -12.48714 -12.39760 -12.15595 -12.12099 -12.02461 -11.92173 -11.66217 -11.57287 -10.65519 -10.52222 -10.11675 -8.51936 -6.02688 -0.10866 0.74006 0.89865 1.38026 1.40010 1.46201 1.56305 1.74088 1.87761 2.29294 2.70458 3.08357 3.13513 3.60256 3.77258 3.89398 3.94942 4.08124 4.15825 4.22200 4.23259 4.48675 4.64855 4.72151 4.88739 5.08436 5.14858 5.37086 5.45691 5.88732 6.37169 6.50989 6.95666 7.03084 7.39820 7.94035 8.64862 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.034181 B = 0.003445 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.978649 B = 8124.948552 C = 8849.138390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.126 5.126 4 N -0.290 5.290 5 C 0.052 3.948 6 C -0.060 4.060 7 C 0.561 3.439 8 O -0.505 6.505 9 O -0.333 6.333 10 C 0.070 3.930 11 C 0.436 3.564 12 O -0.619 6.619 13 N -0.556 5.556 14 C -0.341 4.341 15 H 0.083 0.917 16 C -0.007 4.007 17 N -0.914 5.914 18 Si 0.998 3.002 19 H -0.270 1.270 20 H -0.268 1.268 21 H -0.270 1.270 22 N -0.241 5.241 23 H 0.119 0.881 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.124 0.876 27 H 0.143 0.857 28 H 0.240 0.760 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.401 0.599 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 -10.409 17.803 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.001 4.001 3 N -0.032 5.032 4 N -0.130 5.130 5 C -0.131 4.131 6 C -0.218 4.218 7 C 0.403 3.597 8 O -0.392 6.392 9 O -0.247 6.247 10 C -0.007 4.007 11 C 0.222 3.778 12 O -0.505 6.505 13 N -0.193 5.193 14 C -0.470 4.470 15 H 0.101 0.899 16 C -0.208 4.208 17 N -0.554 5.554 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.193 1.193 21 H -0.195 1.195 22 N -0.092 5.092 23 H 0.138 0.862 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.142 0.858 27 H 0.161 0.839 28 H 0.257 0.743 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.236 0.764 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.740 -11.892 17.575 21.743 hybrid contribution 0.490 1.481 -0.891 1.796 sum -4.250 -10.411 16.684 20.120 Atomic orbital electron populations 1.22188 0.91878 1.05778 1.02606 1.22743 0.97087 0.71885 1.08396 1.48968 1.41444 1.14473 0.98364 1.74024 1.18010 1.05273 1.15643 1.25319 0.99896 0.96059 0.91784 1.21804 1.13123 0.92800 0.94094 1.19513 0.74105 0.85345 0.80719 1.90848 1.44420 1.27313 1.76585 1.86659 1.77936 1.42388 1.17711 1.22674 1.03685 0.87154 0.87144 1.20090 0.84415 0.85873 0.87400 1.90538 1.52654 1.24239 1.83109 1.41704 1.57710 1.14607 1.05304 1.19693 1.44528 1.00964 0.81765 0.89855 1.26116 0.95443 0.94572 1.04680 1.69664 1.43438 1.05460 1.36861 0.84922 0.78990 0.78046 0.75988 1.19506 1.19282 1.19515 1.74652 1.13381 1.04681 1.16516 0.86226 0.91718 0.93229 0.85754 0.83887 0.74342 0.86778 0.86741 0.76420 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 71.98 0.74 -0.96 16 2 C 0.12 1.37 7.24 86.38 0.63 2.00 16 3 N -0.13 -2.80 3.94 -187.49 -0.74 -3.54 16 4 N -0.29 -6.34 12.00 -56.14 -0.67 -7.02 16 5 C 0.05 1.17 12.04 85.47 1.03 2.20 16 6 C -0.06 -1.78 7.26 42.21 0.31 -1.47 16 7 C 0.56 19.13 7.97 70.32 0.56 19.69 16 8 O -0.50 -17.15 16.74 19.89 0.33 -16.82 16 9 O -0.33 -13.37 9.76 -49.76 -0.49 -13.86 16 10 C 0.07 2.71 5.95 71.24 0.42 3.13 16 11 C 0.44 21.78 7.86 87.66 0.69 22.47 16 12 O -0.62 -36.36 16.08 15.75 0.25 -36.11 16 13 N -0.56 -28.80 5.29 -306.98 -1.62 -30.42 16 14 C -0.34 -19.32 9.68 84.04 0.81 -18.50 16 15 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 16 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 17 N -0.91 -48.66 13.05 21.66 0.28 -48.38 16 18 Si 1.00 42.24 29.55 68.60 2.03 44.26 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 N -0.24 -7.19 12.10 -48.20 -0.58 -7.77 16 23 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.24 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.11 3.84 8.14 -2.38 -0.02 3.82 16 31 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 32 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -74.94 302.00 4.88 -70.05 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.44 Total: 20.96 kcal Atomic # 6 Polarization: 22.98 SS G_CDS: 5.65 Total: 28.63 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.34 Total: -97.13 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: 0.10 Total: -66.79 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -74.94 4.88 -70.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815429090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.065 kcal (2) G-P(sol) polarization free energy of solvation -74.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds