Wall clock time and date at job start Mon Mar 30 2020 05:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35726 * 117.00030 * 2 1 4 4 C 1.39357 * 120.35613 * 359.97438 * 3 2 1 5 5 N 1.31300 * 120.87827 * 179.76523 * 4 3 2 6 6 C 1.32885 * 121.71459 * 0.52320 * 5 4 3 7 7 C 1.47760 * 119.68586 * 179.75483 * 6 5 4 8 8 O 1.21565 * 119.99989 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99946 * 359.72093 * 7 6 5 10 10 C 1.46504 * 120.00062 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47187 * 35.00608 * 10 9 7 12 12 C 1.52996 * 109.47374 * 275.00440 * 10 9 7 13 13 C 1.50700 * 109.46844 * 155.00378 * 10 9 7 14 14 H 1.07999 * 120.00265 * 35.00208 * 13 10 9 15 15 C 1.37880 * 119.99949 * 215.00160 * 13 10 9 16 16 N 1.31513 * 120.00273 * 184.91521 * 15 13 10 17 17 Si 1.86799 * 119.99757 * 4.92059 * 15 13 10 18 18 H 1.48500 * 109.47426 * 84.83290 * 17 15 13 19 19 H 1.48507 * 109.47038 * 204.82864 * 17 15 13 20 20 H 1.48498 * 109.47235 * 324.82848 * 17 15 13 21 21 C 1.39717 * 120.63110 * 359.47662 * 6 5 4 22 22 F 1.35098 * 120.47105 * 180.27656 * 21 6 5 23 23 C 1.38692 * 119.06464 * 0.25355 * 21 6 5 24 24 H 1.09005 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47414 * 300.00233 * 1 2 3 26 26 H 1.09005 * 109.46954 * 60.00329 * 1 2 3 27 27 H 1.07995 * 119.56280 * 0.04082 * 4 3 2 28 28 H 0.97005 * 120.00033 * 0.02562 * 9 7 6 29 29 H 1.08997 * 109.46992 * 175.03848 * 12 10 9 30 30 H 1.09000 * 109.47246 * 295.03624 * 12 10 9 31 31 H 1.09003 * 109.47256 * 55.03279 * 12 10 9 32 32 H 0.96995 * 120.00349 * 180.02562 * 16 15 13 33 33 H 1.07997 * 120.78645 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2934 2.3828 -0.0005 5 7 1.8788 3.5580 0.0041 6 6 3.2021 3.6794 -0.0009 7 6 3.8137 5.0245 -0.0009 8 8 5.0236 5.1421 -0.0059 9 7 3.0300 6.1210 -0.0015 10 6 3.6363 7.4547 -0.0009 11 1 4.5535 7.4371 -0.5896 12 6 3.9607 7.8668 1.4364 13 6 2.6724 8.4449 -0.6020 14 1 1.6107 8.3317 -0.4398 15 6 3.1460 9.4953 -1.3592 16 7 2.3152 10.4132 -1.8029 17 14 4.9677 9.6147 -1.7550 18 1 5.2681 8.7949 -2.9562 19 1 5.3247 11.0315 -2.0207 20 1 5.7585 9.1127 -0.6027 21 6 4.0208 2.5472 -0.0004 22 9 5.3658 2.6743 0.0002 23 6 3.4332 1.2909 0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 0.2151 2.3247 -0.0003 28 1 2.0645 6.0271 -0.0016 29 1 4.4910 8.8191 1.4303 30 1 3.0350 7.9701 2.0025 31 1 4.5872 7.1049 1.9003 32 1 2.6482 11.1520 -2.3359 33 1 4.0394 0.3971 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865053722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:08 Heat of formation + Delta-G solvation = -80.661935 kcal Electronic energy + Delta-G solvation = -20009.721849 eV Core-core repulsion = 16564.801095 eV Total energy + Delta-G solvation = -3444.920754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.94779 -40.92918 -39.15772 -37.90376 -34.89002 -32.72494 -32.20235 -30.89189 -29.39770 -27.91218 -25.30412 -24.72436 -23.33777 -21.35469 -19.67188 -18.81600 -18.26426 -17.83167 -16.55269 -16.47422 -16.26942 -15.67560 -15.31318 -15.02744 -14.83967 -14.21191 -13.94217 -13.47332 -13.26146 -13.13971 -12.76454 -12.48982 -12.43805 -12.31184 -11.89647 -11.42439 -11.07924 -10.78851 -10.56681 -10.10549 -9.85201 -9.74472 -9.29730 -9.17727 -8.77230 -8.67289 -8.04694 -6.20562 -4.24136 0.48139 0.78818 2.58563 2.91477 3.29387 3.37031 3.44792 3.64142 3.88201 4.02083 4.13631 4.22984 4.35602 4.60463 4.72180 4.73141 4.84211 5.07082 5.12381 5.22838 5.49824 5.68011 6.15890 6.37099 6.55683 6.69440 6.70368 6.94581 7.21600 7.35812 7.49135 7.54923 8.16106 8.58908 8.79699 8.93815 9.41189 10.91111 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028628 B = 0.004818 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.843170 B = 5809.751900 C = 6380.225634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.305 6.305 3 C 0.121 3.879 4 C 0.009 3.991 5 N -0.389 5.389 6 C 0.021 3.979 7 C 0.554 3.446 8 O -0.543 6.543 9 N -0.677 5.677 10 C 0.229 3.771 11 H 0.052 0.948 12 C -0.147 4.147 13 C -0.529 4.529 14 H 0.080 0.920 15 C 0.082 3.918 16 N -0.889 5.889 17 Si 0.873 3.127 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.259 1.259 21 C 0.150 3.850 22 F -0.098 7.098 23 C -0.162 4.162 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.171 0.829 28 H 0.403 0.597 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 -20.422 3.978 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.216 6.216 3 C 0.072 3.928 4 C -0.154 4.154 5 N -0.100 5.100 6 C -0.119 4.119 7 C 0.337 3.663 8 O -0.421 6.421 9 N -0.325 5.325 10 C 0.127 3.873 11 H 0.070 0.930 12 C -0.206 4.206 13 C -0.567 4.567 14 H 0.098 0.902 15 C -0.123 4.123 16 N -0.525 5.525 17 Si 0.700 3.300 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.184 1.184 21 C 0.127 3.873 22 F -0.076 7.076 23 C -0.188 4.188 24 H 0.124 0.876 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.188 0.812 28 H 0.239 0.761 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.468 -19.517 3.871 20.197 hybrid contribution 0.806 -0.615 -0.325 1.065 sum -2.662 -20.133 3.545 20.615 Atomic orbital electron populations 1.23244 0.77135 1.04791 1.02237 1.86043 1.22322 1.25614 1.87663 1.19982 0.92045 0.86020 0.94708 1.23082 1.01058 0.86488 1.04739 1.67567 1.09553 1.26553 1.06336 1.21720 0.89184 0.94939 1.06102 1.17643 0.86739 0.83178 0.78781 1.90804 1.13281 1.86216 1.51836 1.46533 1.10467 1.05972 1.69553 1.19230 0.95334 0.78810 0.93965 0.93045 1.22217 0.99990 0.99844 0.98584 1.21001 0.94686 1.08570 1.32429 0.90154 1.24930 0.97880 0.95094 0.94356 1.69878 1.35109 1.12283 1.35217 0.86909 0.85788 0.77261 0.80078 1.19810 1.21154 1.18378 1.18289 0.78853 0.92766 0.97438 1.91641 1.27191 1.96423 1.92336 1.20785 0.92848 0.97641 1.07559 0.87562 0.91823 0.91785 0.81167 0.76128 0.92727 0.93269 0.95157 0.92241 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.65 10.50 -18.88 -0.20 -2.84 16 3 C 0.12 1.29 6.72 -38.87 -0.26 1.03 16 4 C 0.01 0.10 10.21 -17.36 -0.18 -0.08 16 5 N -0.39 -5.86 9.52 -9.63 -0.09 -5.95 16 6 C 0.02 0.36 6.75 -82.97 -0.56 -0.20 16 7 C 0.55 11.82 7.76 -12.37 -0.10 11.73 16 8 O -0.54 -13.14 14.96 5.31 0.08 -13.07 16 9 N -0.68 -14.84 5.06 -55.91 -0.28 -15.12 16 10 C 0.23 5.65 2.22 -69.08 -0.15 5.49 16 11 H 0.05 1.37 4.72 -51.93 -0.25 1.13 16 12 C -0.15 -3.33 9.47 37.16 0.35 -2.98 16 13 C -0.53 -14.52 9.05 -34.44 -0.31 -14.83 16 14 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 15 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 16 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 17 Si 0.87 21.86 26.99 -169.99 -4.59 17.27 16 18 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.26 -6.39 6.82 56.52 0.39 -6.01 16 21 C 0.15 2.30 7.31 -38.86 -0.28 2.02 16 22 F -0.10 -1.68 15.54 2.25 0.03 -1.64 16 23 C -0.16 -1.90 10.10 -39.11 -0.40 -2.29 16 24 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 26 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 27 H 0.17 1.30 6.31 -52.49 -0.33 0.97 16 28 H 0.40 8.18 7.91 -40.82 -0.32 7.86 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -32.94 293.71 -4.22 -37.16 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.38 Total: 2.20 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.99 Total: 3.19 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.40 Total: -46.69 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.12 Total: -15.91 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.03 Total: -1.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.94 -4.22 -37.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865053722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.502 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds