Wall clock time and date at job start Mon Mar 30 2020 05:24:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35726 * 117.00030 * 2 1
4 4 C 1.39357 * 120.35613 * 359.97438 * 3 2 1
5 5 N 1.31300 * 120.87827 * 179.76523 * 4 3 2
6 6 C 1.32885 * 121.71459 * 0.52320 * 5 4 3
7 7 C 1.47760 * 119.68586 * 179.75483 * 6 5 4
8 8 O 1.21565 * 119.99989 * 180.02562 * 7 6 5
9 9 N 1.34774 * 119.99946 * 359.72093 * 7 6 5
10 10 C 1.46504 * 120.00062 * 179.97438 * 9 7 6
11 11 H 1.08999 * 109.47187 * 35.00608 * 10 9 7
12 12 C 1.52996 * 109.47374 * 275.00440 * 10 9 7
13 13 C 1.50700 * 109.46844 * 155.00378 * 10 9 7
14 14 H 1.07999 * 120.00265 * 35.00208 * 13 10 9
15 15 C 1.37880 * 119.99949 * 215.00160 * 13 10 9
16 16 N 1.31513 * 120.00273 * 184.91521 * 15 13 10
17 17 Si 1.86799 * 119.99757 * 4.92059 * 15 13 10
18 18 H 1.48500 * 109.47426 * 84.83290 * 17 15 13
19 19 H 1.48507 * 109.47038 * 204.82864 * 17 15 13
20 20 H 1.48498 * 109.47235 * 324.82848 * 17 15 13
21 21 C 1.39717 * 120.63110 * 359.47662 * 6 5 4
22 22 F 1.35098 * 120.47105 * 180.27656 * 21 6 5
23 23 C 1.38692 * 119.06464 * 0.25355 * 21 6 5
24 24 H 1.09005 * 109.47122 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47414 * 300.00233 * 1 2 3
26 26 H 1.09005 * 109.46954 * 60.00329 * 1 2 3
27 27 H 1.07995 * 119.56280 * 0.04082 * 4 3 2
28 28 H 0.97005 * 120.00033 * 0.02562 * 9 7 6
29 29 H 1.08997 * 109.46992 * 175.03848 * 12 10 9
30 30 H 1.09000 * 109.47246 * 295.03624 * 12 10 9
31 31 H 1.09003 * 109.47256 * 55.03279 * 12 10 9
32 32 H 0.96995 * 120.00349 * 180.02562 * 16 15 13
33 33 H 1.07997 * 120.78645 * 179.97438 * 23 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2093 0.0000
4 6 1.2934 2.3828 -0.0005
5 7 1.8788 3.5580 0.0041
6 6 3.2021 3.6794 -0.0009
7 6 3.8137 5.0245 -0.0009
8 8 5.0236 5.1421 -0.0059
9 7 3.0300 6.1210 -0.0015
10 6 3.6363 7.4547 -0.0009
11 1 4.5535 7.4371 -0.5896
12 6 3.9607 7.8668 1.4364
13 6 2.6724 8.4449 -0.6020
14 1 1.6107 8.3317 -0.4398
15 6 3.1460 9.4953 -1.3592
16 7 2.3152 10.4132 -1.8029
17 14 4.9677 9.6147 -1.7550
18 1 5.2681 8.7949 -2.9562
19 1 5.3247 11.0315 -2.0207
20 1 5.7585 9.1127 -0.6027
21 6 4.0208 2.5472 -0.0004
22 9 5.3658 2.6743 0.0002
23 6 3.4332 1.2909 0.0001
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5139 0.8900
26 1 -0.3633 0.5138 -0.8901
27 1 0.2151 2.3247 -0.0003
28 1 2.0645 6.0271 -0.0016
29 1 4.4910 8.8191 1.4303
30 1 3.0350 7.9701 2.0025
31 1 4.5872 7.1049 1.9003
32 1 2.6482 11.1520 -2.3359
33 1 4.0394 0.3971 0.0001
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000865053722.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:24:08
Heat of formation + Delta-G solvation = -80.661935 kcal
Electronic energy + Delta-G solvation = -20009.721849 eV
Core-core repulsion = 16564.801095 eV
Total energy + Delta-G solvation = -3444.920754 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.101 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-48.94779 -40.92918 -39.15772 -37.90376 -34.89002 -32.72494 -32.20235 -30.89189
-29.39770 -27.91218 -25.30412 -24.72436 -23.33777 -21.35469 -19.67188 -18.81600
-18.26426 -17.83167 -16.55269 -16.47422 -16.26942 -15.67560 -15.31318 -15.02744
-14.83967 -14.21191 -13.94217 -13.47332 -13.26146 -13.13971 -12.76454 -12.48982
-12.43805 -12.31184 -11.89647 -11.42439 -11.07924 -10.78851 -10.56681 -10.10549
-9.85201 -9.74472 -9.29730 -9.17727 -8.77230 -8.67289 -8.04694 -6.20562
-4.24136 0.48139 0.78818 2.58563 2.91477 3.29387 3.37031 3.44792
3.64142 3.88201 4.02083 4.13631 4.22984 4.35602 4.60463 4.72180
4.73141 4.84211 5.07082 5.12381 5.22838 5.49824 5.68011 6.15890
6.37099 6.55683 6.69440 6.70368 6.94581 7.21600 7.35812 7.49135
7.54923 8.16106 8.58908 8.79699 8.93815 9.41189 10.91111
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.028628 B = 0.004818 C = 0.004388
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 977.843170 B = 5809.751900 C = 6380.225634
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.305 6.305
3 C 0.121 3.879
4 C 0.009 3.991
5 N -0.389 5.389
6 C 0.021 3.979
7 C 0.554 3.446
8 O -0.543 6.543
9 N -0.677 5.677
10 C 0.229 3.771
11 H 0.052 0.948
12 C -0.147 4.147
13 C -0.529 4.529
14 H 0.080 0.920
15 C 0.082 3.918
16 N -0.889 5.889
17 Si 0.873 3.127
18 H -0.273 1.273
19 H -0.286 1.286
20 H -0.259 1.259
21 C 0.150 3.850
22 F -0.098 7.098
23 C -0.162 4.162
24 H 0.106 0.894
25 H 0.063 0.937
26 H 0.064 0.936
27 H 0.171 0.829
28 H 0.403 0.597
29 H 0.054 0.946
30 H 0.048 0.952
31 H 0.029 0.971
32 H 0.268 0.732
33 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.952 -20.422 3.978 21.177
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.216 6.216
3 C 0.072 3.928
4 C -0.154 4.154
5 N -0.100 5.100
6 C -0.119 4.119
7 C 0.337 3.663
8 O -0.421 6.421
9 N -0.325 5.325
10 C 0.127 3.873
11 H 0.070 0.930
12 C -0.206 4.206
13 C -0.567 4.567
14 H 0.098 0.902
15 C -0.123 4.123
16 N -0.525 5.525
17 Si 0.700 3.300
18 H -0.198 1.198
19 H -0.212 1.212
20 H -0.184 1.184
21 C 0.127 3.873
22 F -0.076 7.076
23 C -0.188 4.188
24 H 0.124 0.876
25 H 0.082 0.918
26 H 0.082 0.918
27 H 0.188 0.812
28 H 0.239 0.761
29 H 0.073 0.927
30 H 0.067 0.933
31 H 0.048 0.952
32 H 0.078 0.922
33 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -3.468 -19.517 3.871 20.197
hybrid contribution 0.806 -0.615 -0.325 1.065
sum -2.662 -20.133 3.545 20.615
Atomic orbital electron populations
1.23244 0.77135 1.04791 1.02237 1.86043 1.22322 1.25614 1.87663
1.19982 0.92045 0.86020 0.94708 1.23082 1.01058 0.86488 1.04739
1.67567 1.09553 1.26553 1.06336 1.21720 0.89184 0.94939 1.06102
1.17643 0.86739 0.83178 0.78781 1.90804 1.13281 1.86216 1.51836
1.46533 1.10467 1.05972 1.69553 1.19230 0.95334 0.78810 0.93965
0.93045 1.22217 0.99990 0.99844 0.98584 1.21001 0.94686 1.08570
1.32429 0.90154 1.24930 0.97880 0.95094 0.94356 1.69878 1.35109
1.12283 1.35217 0.86909 0.85788 0.77261 0.80078 1.19810 1.21154
1.18378 1.18289 0.78853 0.92766 0.97438 1.91641 1.27191 1.96423
1.92336 1.20785 0.92848 0.97641 1.07559 0.87562 0.91823 0.91785
0.81167 0.76128 0.92727 0.93269 0.95157 0.92241 0.82255
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.10 9.82 101.05 0.99 1.09 16
2 O -0.31 -2.65 10.50 -18.88 -0.20 -2.84 16
3 C 0.12 1.29 6.72 -38.87 -0.26 1.03 16
4 C 0.01 0.10 10.21 -17.36 -0.18 -0.08 16
5 N -0.39 -5.86 9.52 -9.63 -0.09 -5.95 16
6 C 0.02 0.36 6.75 -82.97 -0.56 -0.20 16
7 C 0.55 11.82 7.76 -12.37 -0.10 11.73 16
8 O -0.54 -13.14 14.96 5.31 0.08 -13.07 16
9 N -0.68 -14.84 5.06 -55.91 -0.28 -15.12 16
10 C 0.23 5.65 2.22 -69.08 -0.15 5.49 16
11 H 0.05 1.37 4.72 -51.93 -0.25 1.13 16
12 C -0.15 -3.33 9.47 37.16 0.35 -2.98 16
13 C -0.53 -14.52 9.05 -34.44 -0.31 -14.83 16
14 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16
15 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16
16 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16
17 Si 0.87 21.86 26.99 -169.99 -4.59 17.27 16
18 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16
19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
20 H -0.26 -6.39 6.82 56.52 0.39 -6.01 16
21 C 0.15 2.30 7.31 -38.86 -0.28 2.02 16
22 F -0.10 -1.68 15.54 2.25 0.03 -1.64 16
23 C -0.16 -1.90 10.10 -39.11 -0.40 -2.29 16
24 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16
25 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16
26 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16
27 H 0.17 1.30 6.31 -52.49 -0.33 0.97 16
28 H 0.40 8.18 7.91 -40.82 -0.32 7.86 16
29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16
30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
33 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16
LS Contribution 293.71 15.07 4.43 4.43
Total: -1.00 -32.94 293.71 -4.22 -37.16
By element:
Atomic # 1 Polarization: 5.58 SS G_CDS: -3.38 Total: 2.20 kcal
Atomic # 6 Polarization: 4.18 SS G_CDS: -0.99 Total: 3.19 kcal
Atomic # 7 Polarization: -47.09 SS G_CDS: 0.40 Total: -46.69 kcal
Atomic # 8 Polarization: -15.79 SS G_CDS: -0.12 Total: -15.91 kcal
Atomic # 9 Polarization: -1.68 SS G_CDS: 0.03 Total: -1.64 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -32.94 -4.22 -37.16 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865053722.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.502 kcal
(2) G-P(sol) polarization free energy of solvation -32.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.439 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.662 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds