Wall clock time and date at job start Mon Mar 30 2020 05:24:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35726 * 117.00030 * 2 1
4 4 C 1.39357 * 120.35613 * 359.97438 * 3 2 1
5 5 N 1.31300 * 120.87827 * 179.76523 * 4 3 2
6 6 C 1.32885 * 121.71459 * 0.52320 * 5 4 3
7 7 C 1.47760 * 119.68586 * 179.75483 * 6 5 4
8 8 O 1.21565 * 119.99989 * 180.02562 * 7 6 5
9 9 N 1.34774 * 119.99946 * 359.72093 * 7 6 5
10 10 C 1.46504 * 120.00062 * 179.97438 * 9 7 6
11 11 H 1.08999 * 109.47187 * 35.00608 * 10 9 7
12 12 C 1.52996 * 109.47374 * 275.00440 * 10 9 7
13 13 C 1.50700 * 109.46844 * 155.00378 * 10 9 7
14 14 H 1.07999 * 120.00265 * 35.00208 * 13 10 9
15 15 C 1.37880 * 119.99949 * 215.00160 * 13 10 9
16 16 N 1.31513 * 120.00273 * 184.91521 * 15 13 10
17 17 Si 1.86799 * 119.99757 * 4.92059 * 15 13 10
18 18 H 1.48500 * 109.47426 * 84.83290 * 17 15 13
19 19 H 1.48507 * 109.47038 * 204.82864 * 17 15 13
20 20 H 1.48498 * 109.47235 * 324.82848 * 17 15 13
21 21 C 1.39717 * 120.63110 * 359.47662 * 6 5 4
22 22 F 1.35098 * 120.47105 * 180.27656 * 21 6 5
23 23 C 1.38692 * 119.06464 * 0.25355 * 21 6 5
24 24 H 1.09005 * 109.47122 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47414 * 300.00233 * 1 2 3
26 26 H 1.09005 * 109.46954 * 60.00329 * 1 2 3
27 27 H 1.07995 * 119.56280 * 0.04082 * 4 3 2
28 28 H 0.97005 * 120.00033 * 0.02562 * 9 7 6
29 29 H 1.08997 * 109.46992 * 175.03848 * 12 10 9
30 30 H 1.09000 * 109.47246 * 295.03624 * 12 10 9
31 31 H 1.09003 * 109.47256 * 55.03279 * 12 10 9
32 32 H 0.96995 * 120.00349 * 180.02562 * 16 15 13
33 33 H 1.07997 * 120.78645 * 179.97438 * 23 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2093 0.0000
4 6 1.2934 2.3828 -0.0005
5 7 1.8788 3.5580 0.0041
6 6 3.2021 3.6794 -0.0009
7 6 3.8137 5.0245 -0.0009
8 8 5.0236 5.1421 -0.0059
9 7 3.0300 6.1210 -0.0015
10 6 3.6363 7.4547 -0.0009
11 1 4.5535 7.4371 -0.5896
12 6 3.9607 7.8668 1.4364
13 6 2.6724 8.4449 -0.6020
14 1 1.6107 8.3317 -0.4398
15 6 3.1460 9.4953 -1.3592
16 7 2.3152 10.4132 -1.8029
17 14 4.9677 9.6147 -1.7550
18 1 5.2681 8.7949 -2.9562
19 1 5.3247 11.0315 -2.0207
20 1 5.7585 9.1127 -0.6027
21 6 4.0208 2.5472 -0.0004
22 9 5.3658 2.6743 0.0002
23 6 3.4332 1.2909 0.0001
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5139 0.8900
26 1 -0.3633 0.5138 -0.8901
27 1 0.2151 2.3247 -0.0003
28 1 2.0645 6.0271 -0.0016
29 1 4.4910 8.8191 1.4303
30 1 3.0350 7.9701 2.0025
31 1 4.5872 7.1049 1.9003
32 1 2.6482 11.1520 -2.3359
33 1 4.0394 0.3971 0.0001
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000865053722.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:24:08
Heat of formation + Delta-G solvation = -105.671477 kcal
Electronic energy + Delta-G solvation = -20010.806344 eV
Core-core repulsion = 16564.801095 eV
Total energy + Delta-G solvation = -3446.005249 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.101 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-50.15401 -41.91973 -40.55583 -38.99110 -36.78009 -34.45122 -33.54618 -32.26856
-30.92665 -28.45892 -27.35403 -25.89322 -24.39262 -22.92138 -21.45435 -19.98294
-19.57319 -18.95090 -18.31684 -17.41513 -17.36789 -17.05817 -16.58487 -16.46456
-15.84837 -15.81145 -15.46886 -14.81487 -14.54597 -14.44040 -14.32454 -14.19870
-13.85942 -13.30514 -13.05257 -12.90890 -12.81098 -12.50958 -12.46169 -11.87588
-11.34123 -11.25599 -10.87738 -10.74439 -10.73077 -9.99236 -9.62540 -8.39642
-6.46279 -0.62721 -0.18265 1.29387 1.33708 1.44906 1.62935 1.83856
2.21938 2.27194 2.55394 2.89803 2.98003 3.10736 3.35105 3.64422
3.75371 4.03689 4.37715 4.42947 4.44743 4.49275 4.68911 4.72374
4.79208 4.83057 5.04781 5.15372 5.33962 5.42798 5.65646 5.97356
6.08348 6.40663 6.57833 6.82035 7.16909 7.30729 8.75344
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.028628 B = 0.004818 C = 0.004388
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 977.843170 B = 5809.751900 C = 6380.225634
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.005 3.995
2 O -0.304 6.304
3 C 0.147 3.853
4 C 0.019 3.981
5 N -0.405 5.405
6 C -0.015 4.015
7 C 0.552 3.448
8 O -0.580 6.580
9 N -0.681 5.681
10 C 0.231 3.769
11 H 0.033 0.967
12 C -0.140 4.140
13 C -0.527 4.527
14 H 0.057 0.943
15 C 0.036 3.964
16 N -0.927 5.927
17 Si 0.925 3.075
18 H -0.275 1.275
19 H -0.273 1.273
20 H -0.255 1.255
21 C 0.138 3.862
22 F -0.116 7.116
23 C -0.155 4.155
24 H 0.130 0.870
25 H 0.078 0.922
26 H 0.076 0.924
27 H 0.210 0.790
28 H 0.410 0.590
29 H 0.053 0.947
30 H 0.058 0.942
31 H 0.036 0.964
32 H 0.272 0.728
33 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.888 -23.071 4.343 23.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 O -0.215 6.215
3 C 0.097 3.903
4 C -0.145 4.145
5 N -0.117 5.117
6 C -0.152 4.152
7 C 0.338 3.662
8 O -0.461 6.461
9 N -0.329 5.329
10 C 0.128 3.872
11 H 0.051 0.949
12 C -0.199 4.199
13 C -0.566 4.566
14 H 0.075 0.925
15 C -0.165 4.165
16 N -0.566 5.566
17 Si 0.750 3.250
18 H -0.201 1.201
19 H -0.198 1.198
20 H -0.179 1.179
21 C 0.115 3.885
22 F -0.094 7.094
23 C -0.181 4.181
24 H 0.148 0.852
25 H 0.097 0.903
26 H 0.095 0.905
27 H 0.227 0.773
28 H 0.246 0.754
29 H 0.072 0.928
30 H 0.077 0.923
31 H 0.055 0.945
32 H 0.081 0.919
33 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges -4.416 -22.185 4.246 23.015
hybrid contribution 0.853 -0.055 -0.419 0.952
sum -3.563 -22.239 3.827 22.846
Atomic orbital electron populations
1.23689 0.74605 1.06979 1.03575 1.86087 1.24790 1.24115 1.86487
1.19982 0.91687 0.86759 0.91891 1.23718 1.02758 0.85455 1.02587
1.67489 1.08487 1.28662 1.07056 1.21013 0.90457 0.93051 1.10706
1.18149 0.86280 0.84512 0.77254 1.90759 1.14852 1.87164 1.53343
1.46274 1.10832 1.05421 1.70368 1.19023 0.93844 0.79672 0.94670
0.94929 1.22107 1.00605 0.99909 0.97302 1.21138 0.94119 1.09129
1.32176 0.92483 1.25578 1.01472 0.94920 0.94491 1.69966 1.36887
1.13168 1.36534 0.86077 0.81501 0.77704 0.79737 1.20090 1.19828
1.17927 1.18440 0.78059 0.93637 0.98344 1.91591 1.28480 1.96610
1.92686 1.20976 0.93778 0.96893 1.06487 0.85183 0.90343 0.90513
0.77315 0.75362 0.92784 0.92268 0.94468 0.91892 0.79607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 0.02 9.82 113.37 1.11 1.13 16
2 O -0.30 -3.88 10.50 -90.49 -0.95 -4.83 16
3 C 0.15 2.59 6.72 22.73 0.15 2.74 16
4 C 0.02 0.36 10.21 85.04 0.87 1.23 16
5 N -0.41 -11.66 9.52 -184.39 -1.76 -13.42 16
6 C -0.02 -0.52 6.75 41.86 0.28 -0.24 16
7 C 0.55 24.07 7.76 86.76 0.67 24.75 16
8 O -0.58 -28.87 14.96 -3.92 -0.06 -28.93 16
9 N -0.68 -30.36 5.06 -449.06 -2.27 -32.64 16
10 C 0.23 11.58 2.22 44.24 0.10 11.68 16
11 H 0.03 1.77 4.72 -2.39 -0.01 1.75 16
12 C -0.14 -6.34 9.47 71.98 0.68 -5.65 16
13 C -0.53 -29.53 9.05 25.60 0.23 -29.30 16
14 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16
15 C 0.04 2.08 5.47 84.66 0.46 2.54 16
16 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16
17 Si 0.93 45.50 26.99 68.60 1.85 47.35 16
18 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16
19 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16
20 H -0.26 -12.28 6.82 99.48 0.68 -11.60 16
21 C 0.14 4.17 7.31 22.74 0.17 4.34 16
22 F -0.12 -4.00 15.54 44.97 0.70 -3.31 16
23 C -0.16 -3.25 10.10 22.57 0.23 -3.02 16
24 H 0.13 0.05 8.14 -2.38 -0.02 0.03 16
25 H 0.08 0.19 7.67 -2.39 -0.02 0.17 16
26 H 0.08 0.22 7.67 -2.38 -0.02 0.20 16
27 H 0.21 2.20 6.31 -2.91 -0.02 2.18 16
28 H 0.41 16.93 7.91 -92.70 -0.73 16.20 16
29 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16
30 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16
31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16
32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16
33 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16
Total: -1.00 -73.17 293.71 3.17 -70.00
By element:
Atomic # 1 Polarization: 10.78 SS G_CDS: 0.40 Total: 11.18 kcal
Atomic # 6 Polarization: 5.24 SS G_CDS: 4.96 Total: 10.19 kcal
Atomic # 7 Polarization: -97.93 SS G_CDS: -3.73 Total: -101.66 kcal
Atomic # 8 Polarization: -32.75 SS G_CDS: -1.01 Total: -33.75 kcal
Atomic # 9 Polarization: -4.00 SS G_CDS: 0.70 Total: -3.31 kcal
Atomic # 14 Polarization: 45.50 SS G_CDS: 1.85 Total: 47.35 kcal
Total: -73.17 3.17 -70.00 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865053722.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.672 kcal
(2) G-P(sol) polarization free energy of solvation -73.170 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.842 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds