Wall clock time and date at job start Mon Mar 30 2020 05:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35726 * 117.00030 * 2 1 4 4 C 1.39357 * 120.35613 * 359.97438 * 3 2 1 5 5 N 1.31300 * 120.87827 * 179.76523 * 4 3 2 6 6 C 1.32885 * 121.71459 * 0.52320 * 5 4 3 7 7 C 1.47760 * 119.68586 * 179.75483 * 6 5 4 8 8 O 1.21565 * 119.99989 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99946 * 359.72093 * 7 6 5 10 10 C 1.46504 * 120.00062 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47187 * 35.00608 * 10 9 7 12 12 C 1.52996 * 109.47374 * 275.00440 * 10 9 7 13 13 C 1.50700 * 109.46844 * 155.00378 * 10 9 7 14 14 H 1.07999 * 120.00265 * 35.00208 * 13 10 9 15 15 C 1.37880 * 119.99949 * 215.00160 * 13 10 9 16 16 N 1.31513 * 120.00273 * 184.91521 * 15 13 10 17 17 Si 1.86799 * 119.99757 * 4.92059 * 15 13 10 18 18 H 1.48500 * 109.47426 * 84.83290 * 17 15 13 19 19 H 1.48507 * 109.47038 * 204.82864 * 17 15 13 20 20 H 1.48498 * 109.47235 * 324.82848 * 17 15 13 21 21 C 1.39717 * 120.63110 * 359.47662 * 6 5 4 22 22 F 1.35098 * 120.47105 * 180.27656 * 21 6 5 23 23 C 1.38692 * 119.06464 * 0.25355 * 21 6 5 24 24 H 1.09005 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47414 * 300.00233 * 1 2 3 26 26 H 1.09005 * 109.46954 * 60.00329 * 1 2 3 27 27 H 1.07995 * 119.56280 * 0.04082 * 4 3 2 28 28 H 0.97005 * 120.00033 * 0.02562 * 9 7 6 29 29 H 1.08997 * 109.46992 * 175.03848 * 12 10 9 30 30 H 1.09000 * 109.47246 * 295.03624 * 12 10 9 31 31 H 1.09003 * 109.47256 * 55.03279 * 12 10 9 32 32 H 0.96995 * 120.00349 * 180.02562 * 16 15 13 33 33 H 1.07997 * 120.78645 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2934 2.3828 -0.0005 5 7 1.8788 3.5580 0.0041 6 6 3.2021 3.6794 -0.0009 7 6 3.8137 5.0245 -0.0009 8 8 5.0236 5.1421 -0.0059 9 7 3.0300 6.1210 -0.0015 10 6 3.6363 7.4547 -0.0009 11 1 4.5535 7.4371 -0.5896 12 6 3.9607 7.8668 1.4364 13 6 2.6724 8.4449 -0.6020 14 1 1.6107 8.3317 -0.4398 15 6 3.1460 9.4953 -1.3592 16 7 2.3152 10.4132 -1.8029 17 14 4.9677 9.6147 -1.7550 18 1 5.2681 8.7949 -2.9562 19 1 5.3247 11.0315 -2.0207 20 1 5.7585 9.1127 -0.6027 21 6 4.0208 2.5472 -0.0004 22 9 5.3658 2.6743 0.0002 23 6 3.4332 1.2909 0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 0.2151 2.3247 -0.0003 28 1 2.0645 6.0271 -0.0016 29 1 4.4910 8.8191 1.4303 30 1 3.0350 7.9701 2.0025 31 1 4.5872 7.1049 1.9003 32 1 2.6482 11.1520 -2.3359 33 1 4.0394 0.3971 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865053722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:08 Heat of formation + Delta-G solvation = -105.671477 kcal Electronic energy + Delta-G solvation = -20010.806344 eV Core-core repulsion = 16564.801095 eV Total energy + Delta-G solvation = -3446.005249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.15401 -41.91973 -40.55583 -38.99110 -36.78009 -34.45122 -33.54618 -32.26856 -30.92665 -28.45892 -27.35403 -25.89322 -24.39262 -22.92138 -21.45435 -19.98294 -19.57319 -18.95090 -18.31684 -17.41513 -17.36789 -17.05817 -16.58487 -16.46456 -15.84837 -15.81145 -15.46886 -14.81487 -14.54597 -14.44040 -14.32454 -14.19870 -13.85942 -13.30514 -13.05257 -12.90890 -12.81098 -12.50958 -12.46169 -11.87588 -11.34123 -11.25599 -10.87738 -10.74439 -10.73077 -9.99236 -9.62540 -8.39642 -6.46279 -0.62721 -0.18265 1.29387 1.33708 1.44906 1.62935 1.83856 2.21938 2.27194 2.55394 2.89803 2.98003 3.10736 3.35105 3.64422 3.75371 4.03689 4.37715 4.42947 4.44743 4.49275 4.68911 4.72374 4.79208 4.83057 5.04781 5.15372 5.33962 5.42798 5.65646 5.97356 6.08348 6.40663 6.57833 6.82035 7.16909 7.30729 8.75344 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028628 B = 0.004818 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.843170 B = 5809.751900 C = 6380.225634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.304 6.304 3 C 0.147 3.853 4 C 0.019 3.981 5 N -0.405 5.405 6 C -0.015 4.015 7 C 0.552 3.448 8 O -0.580 6.580 9 N -0.681 5.681 10 C 0.231 3.769 11 H 0.033 0.967 12 C -0.140 4.140 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.036 3.964 16 N -0.927 5.927 17 Si 0.925 3.075 18 H -0.275 1.275 19 H -0.273 1.273 20 H -0.255 1.255 21 C 0.138 3.862 22 F -0.116 7.116 23 C -0.155 4.155 24 H 0.130 0.870 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.210 0.790 28 H 0.410 0.590 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.272 0.728 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -23.071 4.343 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.215 6.215 3 C 0.097 3.903 4 C -0.145 4.145 5 N -0.117 5.117 6 C -0.152 4.152 7 C 0.338 3.662 8 O -0.461 6.461 9 N -0.329 5.329 10 C 0.128 3.872 11 H 0.051 0.949 12 C -0.199 4.199 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.165 4.165 16 N -0.566 5.566 17 Si 0.750 3.250 18 H -0.201 1.201 19 H -0.198 1.198 20 H -0.179 1.179 21 C 0.115 3.885 22 F -0.094 7.094 23 C -0.181 4.181 24 H 0.148 0.852 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.227 0.773 28 H 0.246 0.754 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.416 -22.185 4.246 23.015 hybrid contribution 0.853 -0.055 -0.419 0.952 sum -3.563 -22.239 3.827 22.846 Atomic orbital electron populations 1.23689 0.74605 1.06979 1.03575 1.86087 1.24790 1.24115 1.86487 1.19982 0.91687 0.86759 0.91891 1.23718 1.02758 0.85455 1.02587 1.67489 1.08487 1.28662 1.07056 1.21013 0.90457 0.93051 1.10706 1.18149 0.86280 0.84512 0.77254 1.90759 1.14852 1.87164 1.53343 1.46274 1.10832 1.05421 1.70368 1.19023 0.93844 0.79672 0.94670 0.94929 1.22107 1.00605 0.99909 0.97302 1.21138 0.94119 1.09129 1.32176 0.92483 1.25578 1.01472 0.94920 0.94491 1.69966 1.36887 1.13168 1.36534 0.86077 0.81501 0.77704 0.79737 1.20090 1.19828 1.17927 1.18440 0.78059 0.93637 0.98344 1.91591 1.28480 1.96610 1.92686 1.20976 0.93778 0.96893 1.06487 0.85183 0.90343 0.90513 0.77315 0.75362 0.92784 0.92268 0.94468 0.91892 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.82 113.37 1.11 1.13 16 2 O -0.30 -3.88 10.50 -90.49 -0.95 -4.83 16 3 C 0.15 2.59 6.72 22.73 0.15 2.74 16 4 C 0.02 0.36 10.21 85.04 0.87 1.23 16 5 N -0.41 -11.66 9.52 -184.39 -1.76 -13.42 16 6 C -0.02 -0.52 6.75 41.86 0.28 -0.24 16 7 C 0.55 24.07 7.76 86.76 0.67 24.75 16 8 O -0.58 -28.87 14.96 -3.92 -0.06 -28.93 16 9 N -0.68 -30.36 5.06 -449.06 -2.27 -32.64 16 10 C 0.23 11.58 2.22 44.24 0.10 11.68 16 11 H 0.03 1.77 4.72 -2.39 -0.01 1.75 16 12 C -0.14 -6.34 9.47 71.98 0.68 -5.65 16 13 C -0.53 -29.53 9.05 25.60 0.23 -29.30 16 14 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 15 C 0.04 2.08 5.47 84.66 0.46 2.54 16 16 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16 17 Si 0.93 45.50 26.99 68.60 1.85 47.35 16 18 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.26 -12.28 6.82 99.48 0.68 -11.60 16 21 C 0.14 4.17 7.31 22.74 0.17 4.34 16 22 F -0.12 -4.00 15.54 44.97 0.70 -3.31 16 23 C -0.16 -3.25 10.10 22.57 0.23 -3.02 16 24 H 0.13 0.05 8.14 -2.38 -0.02 0.03 16 25 H 0.08 0.19 7.67 -2.39 -0.02 0.17 16 26 H 0.08 0.22 7.67 -2.38 -0.02 0.20 16 27 H 0.21 2.20 6.31 -2.91 -0.02 2.18 16 28 H 0.41 16.93 7.91 -92.70 -0.73 16.20 16 29 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -73.17 293.71 3.17 -70.00 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.40 Total: 11.18 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 4.96 Total: 10.19 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -3.73 Total: -101.66 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.01 Total: -33.75 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.70 Total: -3.31 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.85 Total: 47.35 kcal Total: -73.17 3.17 -70.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865053722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.672 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds