Wall clock time and date at job start Mon Mar 30 2020 05:27:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46505 * 109.47380 * 2 1
4 4 C 1.37102 * 119.99586 * 272.30684 * 3 2 1
5 5 H 1.07999 * 119.99748 * 182.94406 * 4 3 2
6 6 C 1.38940 * 120.00108 * 2.95351 * 4 3 2
7 7 N 1.31419 * 120.00288 * 26.38563 * 6 4 3
8 8 Si 1.86806 * 120.00058 * 206.38927 * 6 4 3
9 9 H 1.48500 * 109.46781 * 59.99479 * 8 6 4
10 10 H 1.48493 * 109.47181 * 179.97438 * 8 6 4
11 11 H 1.48496 * 109.47036 * 300.00093 * 8 6 4
12 12 C 1.34774 * 120.00253 * 92.31243 * 3 2 1
13 13 O 1.21288 * 119.99981 * 354.91882 * 12 3 2
14 14 C 1.50692 * 119.99867 * 175.20047 * 12 3 2
15 15 C 1.47194 * 109.22351 * 57.35072 * 14 12 3
16 16 N 5.00327 * 87.79233 * 358.06066 * 2 1 3
17 17 C 1.52584 * 109.22754 * 297.98351 * 14 12 3
18 18 C 1.53097 * 109.95653 * 169.00481 * 17 14 12
19 19 S 1.81742 * 108.84217 * 63.02663 * 18 17 14
20 20 C 1.81747 * 102.22287 * 306.73701 * 19 18 17
21 21 C 1.52589 * 109.22454 * 176.75160 * 14 12 3
22 22 H 1.08997 * 109.47184 * 172.80245 * 1 2 3
23 23 H 1.09002 * 109.47165 * 292.80686 * 1 2 3
24 24 H 1.08998 * 109.46843 * 52.79647 * 1 2 3
25 25 H 1.09003 * 109.47302 * 239.99298 * 2 1 3
26 26 H 1.09000 * 109.47091 * 119.99768 * 2 1 3
27 27 H 0.97000 * 119.99737 * 180.02562 * 7 6 4
28 28 H 1.08995 * 109.39233 * 289.15407 * 17 14 12
29 29 H 1.09004 * 109.38752 * 48.86042 * 17 14 12
30 30 H 1.09001 * 109.57529 * 303.21718 * 18 17 14
31 31 H 1.08999 * 109.68215 * 182.90212 * 18 17 14
32 32 H 1.09006 * 109.57051 * 293.45297 * 20 19 18
33 33 H 1.09000 * 109.68134 * 173.13617 * 20 19 18
34 34 H 1.09001 * 109.38940 * 311.14143 * 21 14 12
35 35 H 1.08996 * 109.39227 * 70.84778 * 21 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2018 2.0434 -1.1864
5 1 2.6067 3.0446 -1.1890
6 6 1.8666 1.4265 -2.3854
7 7 0.9407 0.4941 -2.4083
8 14 2.7321 1.9222 -3.9649
9 1 4.1900 1.6745 -3.8291
10 1 2.1974 1.1208 -5.0948
11 1 2.4975 3.3651 -4.2260
12 6 2.2874 2.0009 1.1662
13 8 2.0387 1.4495 2.2174
14 6 2.8914 3.3815 1.1640
15 6 2.0142 4.2931 0.4116
16 7 1.3372 4.9967 -0.1692
17 6 4.2590 3.3306 0.4893
18 6 4.7677 4.7513 0.2313
19 16 4.9913 5.5934 1.8263
20 6 3.3678 5.3675 2.6115
21 6 3.0168 3.8774 2.6016
22 1 -0.3633 -1.0195 -0.1288
23 1 -0.3633 0.3984 0.9473
24 1 -0.3633 0.6214 -0.8185
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 0.7071 0.0632 -3.2453
28 1 4.9624 2.8063 1.1361
29 1 4.1754 2.7985 -0.4584
30 1 4.0401 5.2961 -0.3705
31 1 5.7204 4.7100 -0.2967
32 1 2.6130 5.9244 2.0562
33 1 3.4042 5.7274 3.6398
34 1 2.0705 3.7251 3.1207
35 1 3.8013 3.3174 3.1105
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000930618539.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:27:35
Heat of formation + Delta-G solvation = 8.283094 kcal
Electronic energy + Delta-G solvation = -19569.209096 eV
Core-core repulsion = 16694.358463 eV
Total energy + Delta-G solvation = -2874.850632 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.96401 -36.95204 -35.45022 -34.44858 -31.88209 -31.42376 -30.06346 -27.77229
-25.05969 -23.03582 -22.55831 -21.66318 -19.69463 -17.91659 -17.35522 -16.26325
-15.27457 -14.87507 -14.76889 -14.45599 -13.80458 -13.63749 -13.57824 -13.09065
-12.83778 -12.62397 -12.46434 -12.37224 -12.00481 -11.94676 -11.67648 -11.34139
-11.25281 -11.16345 -11.03766 -10.80259 -10.61146 -10.46682 -10.01072 -9.81103
-9.57805 -9.00782 -8.60388 -8.05172 -7.55883 -6.59851 -4.06503 1.89811
2.62316 2.94512 3.08936 3.09917 3.18108 3.31666 3.60212 3.89711
4.29511 4.52175 4.78014 4.85737 5.02308 5.10347 5.22417 5.38174
5.53768 5.60479 5.80990 5.97446 6.10856 6.14510 6.33195 6.43132
6.47690 6.66323 6.75329 6.92526 7.13765 7.23677 7.49878 7.73070
8.07143 8.19876 8.83020 9.25401 9.65560 10.34117
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.020741 B = 0.008711 C = 0.006984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1349.630052 B = 3213.712461 C = 4007.985846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.136 3.864
3 N -0.421 5.421
4 C -0.356 4.356
5 H 0.107 0.893
6 C 0.050 3.950
7 N -0.836 5.836
8 Si 0.906 3.094
9 H -0.267 1.267
10 H -0.280 1.280
11 H -0.271 1.271
12 C 0.453 3.547
13 O -0.596 6.596
14 C 0.034 3.966
15 C 0.232 3.768
16 N -0.434 5.434
17 C -0.122 4.122
18 C -0.080 4.080
19 S -0.275 6.275
20 C -0.084 4.084
21 C -0.092 4.092
22 H 0.036 0.964
23 H 0.021 0.979
24 H 0.092 0.908
25 H 0.090 0.910
26 H 0.045 0.955
27 H 0.272 0.728
28 H 0.094 0.906
29 H 0.117 0.883
30 H 0.081 0.919
31 H 0.111 0.889
32 H 0.080 0.920
33 H 0.110 0.890
34 H 0.090 0.910
35 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.286 3.457 3.530 7.995
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.013 3.987
3 N -0.137 5.137
4 C -0.482 4.482
5 H 0.124 0.876
6 C -0.158 4.158
7 N -0.472 5.472
8 Si 0.731 3.269
9 H -0.192 1.192
10 H -0.205 1.205
11 H -0.196 1.196
12 C 0.239 3.761
13 O -0.483 6.483
14 C 0.027 3.973
15 C -0.086 4.086
16 N -0.109 5.109
17 C -0.162 4.162
18 C -0.228 4.228
19 S -0.049 6.049
20 C -0.232 4.232
21 C -0.132 4.132
22 H 0.055 0.945
23 H 0.040 0.960
24 H 0.110 0.890
25 H 0.108 0.892
26 H 0.063 0.937
27 H 0.083 0.917
28 H 0.112 0.888
29 H 0.135 0.865
30 H 0.100 0.900
31 H 0.129 0.871
32 H 0.098 0.902
33 H 0.128 0.872
34 H 0.109 0.891
35 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 5.905 4.610 3.366 8.212
hybrid contribution -0.617 -0.618 -1.332 1.592
sum 5.288 3.992 2.034 6.931
Atomic orbital electron populations
1.22016 0.96343 1.00596 1.00776 1.21282 0.94876 0.82203 1.00299
1.43871 1.53305 1.11907 1.04594 1.19717 1.44295 1.01377 0.82855
0.87597 1.25182 0.94767 0.96371 0.99495 1.70264 1.23502 1.25439
1.27994 0.86305 0.80418 0.79188 0.80977 1.19245 1.20509 1.19600
1.19027 0.86342 0.86322 0.84438 1.90564 1.59788 1.66956 1.30966
1.18290 0.92915 0.92037 0.94019 1.28363 0.93959 0.93076 0.93155
1.81104 1.08866 1.12115 1.08854 1.22008 0.93277 0.96116 1.04765
1.23546 1.05623 0.97988 0.95663 1.86583 1.21835 1.75584 1.20870
1.23566 0.95947 0.99835 1.03845 1.21551 1.05015 0.93049 0.93628
0.94531 0.96005 0.88978 0.89218 0.93695 0.91698 0.88798 0.86471
0.89994 0.87108 0.90156 0.87211 0.89136 0.88385
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.14 9.45 37.16 0.35 -2.79 16
2 C 0.14 3.11 5.36 -4.04 -0.02 3.08 16
3 N -0.42 -9.79 2.63 -114.82 -0.30 -10.09 16
4 C -0.36 -8.28 7.12 -14.93 -0.11 -8.39 16
5 H 0.11 2.39 3.92 -52.49 -0.21 2.19 16
6 C 0.05 1.16 4.95 -17.47 -0.09 1.07 16
7 N -0.84 -19.87 8.13 55.50 0.45 -19.42 16
8 Si 0.91 18.32 29.63 -169.99 -5.04 13.29 16
9 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16
10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16
11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16
12 C 0.45 10.04 6.40 -10.99 -0.07 9.97 16
13 O -0.60 -14.35 15.39 5.55 0.09 -14.26 16
14 C 0.03 0.63 0.46 -158.88 -0.07 0.56 16
15 C 0.23 4.64 7.33 -20.76 -0.15 4.48 16
16 N -0.43 -9.34 18.54 42.16 0.78 -8.56 16
17 C -0.12 -1.94 4.30 -26.89 -0.12 -2.06 16
18 C -0.08 -1.14 6.15 37.21 0.23 -0.91 16
19 S -0.27 -3.83 22.33 -107.50 -2.40 -6.23 16
20 C -0.08 -1.14 6.15 37.21 0.23 -0.92 16
21 C -0.09 -1.44 4.10 -26.89 -0.11 -1.55 16
22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
24 H 0.09 2.28 6.13 -51.93 -0.32 1.97 16
25 H 0.09 2.09 6.11 -51.93 -0.32 1.77 16
26 H 0.04 1.01 7.43 -51.93 -0.39 0.62 16
27 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16
28 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16
29 H 0.12 2.04 5.34 -51.93 -0.28 1.76 16
30 H 0.08 1.28 6.86 -51.93 -0.36 0.92 16
31 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16
32 H 0.08 1.19 6.86 -51.92 -0.36 0.83 16
33 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16
34 H 0.09 1.48 7.74 -51.93 -0.40 1.08 16
35 H 0.10 1.45 8.06 -51.93 -0.42 1.03 16
LS Contribution 287.14 15.07 4.33 4.33
Total: -1.00 -26.37 287.14 -6.30 -32.68
By element:
Atomic # 1 Polarization: 10.00 SS G_CDS: -4.28 Total: 5.71 kcal
Atomic # 6 Polarization: 2.48 SS G_CDS: 0.07 Total: 2.56 kcal
Atomic # 7 Polarization: -39.00 SS G_CDS: 0.93 Total: -38.07 kcal
Atomic # 8 Polarization: -14.35 SS G_CDS: 0.09 Total: -14.26 kcal
Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.29 kcal
Atomic # 16 Polarization: -3.83 SS G_CDS: -2.40 Total: -6.23 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -26.37 -6.30 -32.68 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930618539.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.958 kcal
(2) G-P(sol) polarization free energy of solvation -26.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.586 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.675 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds