Wall clock time and date at job start Mon Mar 30 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47380 * 2 1 4 4 C 1.37102 * 119.99586 * 272.30684 * 3 2 1 5 5 H 1.07999 * 119.99748 * 182.94406 * 4 3 2 6 6 C 1.38940 * 120.00108 * 2.95351 * 4 3 2 7 7 N 1.31419 * 120.00288 * 26.38563 * 6 4 3 8 8 Si 1.86806 * 120.00058 * 206.38927 * 6 4 3 9 9 H 1.48500 * 109.46781 * 59.99479 * 8 6 4 10 10 H 1.48493 * 109.47181 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47036 * 300.00093 * 8 6 4 12 12 C 1.34774 * 120.00253 * 92.31243 * 3 2 1 13 13 O 1.21288 * 119.99981 * 354.91882 * 12 3 2 14 14 C 1.50692 * 119.99867 * 175.20047 * 12 3 2 15 15 C 1.47194 * 109.22351 * 57.35072 * 14 12 3 16 16 N 5.00327 * 87.79233 * 358.06066 * 2 1 3 17 17 C 1.52584 * 109.22754 * 297.98351 * 14 12 3 18 18 C 1.53097 * 109.95653 * 169.00481 * 17 14 12 19 19 S 1.81742 * 108.84217 * 63.02663 * 18 17 14 20 20 C 1.81747 * 102.22287 * 306.73701 * 19 18 17 21 21 C 1.52589 * 109.22454 * 176.75160 * 14 12 3 22 22 H 1.08997 * 109.47184 * 172.80245 * 1 2 3 23 23 H 1.09002 * 109.47165 * 292.80686 * 1 2 3 24 24 H 1.08998 * 109.46843 * 52.79647 * 1 2 3 25 25 H 1.09003 * 109.47302 * 239.99298 * 2 1 3 26 26 H 1.09000 * 109.47091 * 119.99768 * 2 1 3 27 27 H 0.97000 * 119.99737 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.39233 * 289.15407 * 17 14 12 29 29 H 1.09004 * 109.38752 * 48.86042 * 17 14 12 30 30 H 1.09001 * 109.57529 * 303.21718 * 18 17 14 31 31 H 1.08999 * 109.68215 * 182.90212 * 18 17 14 32 32 H 1.09006 * 109.57051 * 293.45297 * 20 19 18 33 33 H 1.09000 * 109.68134 * 173.13617 * 20 19 18 34 34 H 1.09001 * 109.38940 * 311.14143 * 21 14 12 35 35 H 1.08996 * 109.39227 * 70.84778 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2018 2.0434 -1.1864 5 1 2.6067 3.0446 -1.1890 6 6 1.8666 1.4265 -2.3854 7 7 0.9407 0.4941 -2.4083 8 14 2.7321 1.9222 -3.9649 9 1 4.1900 1.6745 -3.8291 10 1 2.1974 1.1208 -5.0948 11 1 2.4975 3.3651 -4.2260 12 6 2.2874 2.0009 1.1662 13 8 2.0387 1.4495 2.2174 14 6 2.8914 3.3815 1.1640 15 6 2.0142 4.2931 0.4116 16 7 1.3372 4.9967 -0.1692 17 6 4.2590 3.3306 0.4893 18 6 4.7677 4.7513 0.2313 19 16 4.9913 5.5934 1.8263 20 6 3.3678 5.3675 2.6115 21 6 3.0168 3.8774 2.6016 22 1 -0.3633 -1.0195 -0.1288 23 1 -0.3633 0.3984 0.9473 24 1 -0.3633 0.6214 -0.8185 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.7071 0.0632 -3.2453 28 1 4.9624 2.8063 1.1361 29 1 4.1754 2.7985 -0.4584 30 1 4.0401 5.2961 -0.3705 31 1 5.7204 4.7100 -0.2967 32 1 2.6130 5.9244 2.0562 33 1 3.4042 5.7274 3.6398 34 1 2.0705 3.7251 3.1207 35 1 3.8013 3.3174 3.1105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930618539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:34 Heat of formation + Delta-G solvation = -5.440857 kcal Electronic energy + Delta-G solvation = -19569.804211 eV Core-core repulsion = 16694.358463 eV Total energy + Delta-G solvation = -2875.445747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58642 -38.57093 -37.22571 -36.01729 -33.61112 -32.74553 -31.75669 -29.19036 -26.85070 -24.43271 -23.98635 -23.19259 -21.45236 -19.61137 -18.80742 -17.76491 -16.68421 -16.49089 -16.31225 -16.00087 -15.55284 -15.24386 -14.79656 -14.52531 -14.39768 -14.17841 -13.93641 -13.81788 -13.58734 -13.39480 -13.27317 -13.04440 -12.83262 -12.56465 -12.49858 -12.43298 -12.20120 -12.15219 -11.64917 -11.33732 -10.90920 -10.69799 -10.33081 -9.86822 -8.66212 -8.36924 -5.88225 0.79595 1.30113 1.44576 1.49020 1.50493 1.56108 1.74306 1.93290 2.22583 2.70179 2.93129 3.05742 3.57170 3.69734 3.83518 3.90925 4.17645 4.30275 4.34194 4.51221 4.65107 4.71904 4.82219 4.85911 4.91637 4.93780 5.08240 5.10058 5.17086 5.35736 5.40126 5.71195 5.84857 6.37771 6.48456 7.03573 7.47583 7.87579 8.57645 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.008711 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.630052 B = 3213.712461 C = 4007.985846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.137 3.863 3 N -0.432 5.432 4 C -0.366 4.366 5 H 0.111 0.889 6 C 0.013 3.987 7 N -0.856 5.856 8 Si 0.962 3.038 9 H -0.253 1.253 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.446 3.554 13 O -0.618 6.618 14 C 0.037 3.963 15 C 0.244 3.756 16 N -0.464 5.464 17 C -0.116 4.116 18 C -0.079 4.079 19 S -0.260 6.260 20 C -0.080 4.080 21 C -0.088 4.088 22 H 0.055 0.945 23 H 0.010 0.990 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.274 0.726 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.137 0.863 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.860 4.079 3.669 9.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.014 3.986 3 N -0.148 5.148 4 C -0.493 4.493 5 H 0.128 0.872 6 C -0.193 4.193 7 N -0.493 5.493 8 Si 0.785 3.215 9 H -0.177 1.177 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.233 3.767 13 O -0.507 6.507 14 C 0.030 3.970 15 C -0.073 4.073 16 N -0.141 5.141 17 C -0.156 4.156 18 C -0.227 4.227 19 S -0.034 6.034 20 C -0.228 4.228 21 C -0.128 4.128 22 H 0.074 0.926 23 H 0.029 0.971 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.086 0.914 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.487 5.236 3.506 9.786 hybrid contribution -1.151 -0.837 -1.327 1.946 sum 6.336 4.399 2.178 8.016 Atomic orbital electron populations 1.21864 0.96243 1.01236 0.99069 1.21237 0.94889 0.82537 0.99928 1.44063 1.53534 1.12064 1.05135 1.19912 1.44578 1.01766 0.83010 0.87161 1.25870 0.95033 0.96624 1.01794 1.70336 1.24044 1.26253 1.28622 0.85467 0.80176 0.78056 0.77770 1.17726 1.20545 1.20513 1.19632 0.85774 0.87552 0.83757 1.90540 1.60525 1.68023 1.31593 1.18453 0.93430 0.89289 0.95849 1.28696 0.93434 0.92663 0.92500 1.81101 1.09764 1.13225 1.09974 1.21991 0.92104 0.97442 1.04097 1.23526 1.06451 0.96468 0.96227 1.86580 1.21316 1.75367 1.20144 1.23558 0.95700 0.98087 1.05475 1.21561 1.05063 0.94585 0.91574 0.92574 0.97080 0.91202 0.89731 0.93678 0.91601 0.87055 0.87912 0.91470 0.84534 0.91363 0.84367 0.90141 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 9.45 71.98 0.68 -5.03 16 2 C 0.14 6.27 5.36 86.38 0.46 6.74 16 3 N -0.43 -20.10 2.63 -635.55 -1.67 -21.76 16 4 C -0.37 -16.95 7.12 84.04 0.60 -16.35 16 5 H 0.11 4.94 3.92 -2.91 -0.01 4.93 16 6 C 0.01 0.58 4.95 84.92 0.42 1.00 16 7 N -0.86 -40.71 8.13 21.66 0.18 -40.53 16 8 Si 0.96 37.01 29.63 68.60 2.03 39.04 16 9 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 10 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 12 C 0.45 19.62 6.40 87.65 0.56 20.18 16 13 O -0.62 -29.64 15.39 -3.05 -0.05 -29.69 16 14 C 0.04 1.30 0.46 -55.01 -0.03 1.28 16 15 C 0.24 9.64 7.33 89.44 0.66 10.30 16 16 N -0.46 -19.96 18.54 20.01 0.37 -19.59 16 17 C -0.12 -3.50 4.30 30.49 0.13 -3.37 16 18 C -0.08 -2.05 6.15 72.01 0.44 -1.61 16 19 S -0.26 -6.51 22.33 -56.49 -1.26 -7.77 16 20 C -0.08 -2.00 6.15 72.01 0.44 -1.56 16 21 C -0.09 -2.59 4.10 30.49 0.12 -2.47 16 22 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.07 3.50 6.13 -2.39 -0.01 3.49 16 25 H 0.08 3.95 6.11 -2.39 -0.01 3.94 16 26 H 0.04 2.03 7.43 -2.39 -0.02 2.01 16 27 H 0.27 12.37 8.31 -92.71 -0.77 11.60 16 28 H 0.11 2.96 8.06 -2.39 -0.02 2.94 16 29 H 0.10 3.44 5.34 -2.38 -0.01 3.43 16 30 H 0.07 1.98 6.86 -2.39 -0.02 1.96 16 31 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.07 1.90 6.86 -2.38 -0.02 1.89 16 33 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.08 2.55 7.74 -2.39 -0.02 2.53 16 35 H 0.11 3.00 8.06 -2.39 -0.02 2.99 16 Total: -1.00 -55.31 287.14 5.21 -50.10 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.11 Total: 21.10 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 4.50 Total: 9.11 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.12 Total: -81.88 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.05 Total: -29.69 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.26 Total: -7.77 kcal Total: -55.31 5.21 -50.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930618539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.656 kcal (2) G-P(sol) polarization free energy of solvation -55.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds