Wall clock time and date at job start Mon Mar 30 2020 05:27:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46505 * 109.47380 * 2 1
4 4 C 1.37102 * 119.99586 * 272.30684 * 3 2 1
5 5 H 1.07999 * 119.99748 * 182.94406 * 4 3 2
6 6 C 1.38940 * 120.00108 * 2.95351 * 4 3 2
7 7 N 1.31419 * 120.00288 * 26.38563 * 6 4 3
8 8 Si 1.86806 * 120.00058 * 206.38927 * 6 4 3
9 9 H 1.48500 * 109.46781 * 59.99479 * 8 6 4
10 10 H 1.48493 * 109.47181 * 179.97438 * 8 6 4
11 11 H 1.48496 * 109.47036 * 300.00093 * 8 6 4
12 12 C 1.34774 * 120.00253 * 92.31243 * 3 2 1
13 13 O 1.21288 * 119.99981 * 354.91882 * 12 3 2
14 14 C 1.50692 * 119.99867 * 175.20047 * 12 3 2
15 15 C 1.47194 * 109.22351 * 57.35072 * 14 12 3
16 16 N 5.00327 * 87.79233 * 358.06066 * 2 1 3
17 17 C 1.52584 * 109.22754 * 297.98351 * 14 12 3
18 18 C 1.53097 * 109.95653 * 169.00481 * 17 14 12
19 19 S 1.81742 * 108.84217 * 63.02663 * 18 17 14
20 20 C 1.81747 * 102.22287 * 306.73701 * 19 18 17
21 21 C 1.52589 * 109.22454 * 176.75160 * 14 12 3
22 22 H 1.08997 * 109.47184 * 172.80245 * 1 2 3
23 23 H 1.09002 * 109.47165 * 292.80686 * 1 2 3
24 24 H 1.08998 * 109.46843 * 52.79647 * 1 2 3
25 25 H 1.09003 * 109.47302 * 239.99298 * 2 1 3
26 26 H 1.09000 * 109.47091 * 119.99768 * 2 1 3
27 27 H 0.97000 * 119.99737 * 180.02562 * 7 6 4
28 28 H 1.08995 * 109.39233 * 289.15407 * 17 14 12
29 29 H 1.09004 * 109.38752 * 48.86042 * 17 14 12
30 30 H 1.09001 * 109.57529 * 303.21718 * 18 17 14
31 31 H 1.08999 * 109.68215 * 182.90212 * 18 17 14
32 32 H 1.09006 * 109.57051 * 293.45297 * 20 19 18
33 33 H 1.09000 * 109.68134 * 173.13617 * 20 19 18
34 34 H 1.09001 * 109.38940 * 311.14143 * 21 14 12
35 35 H 1.08996 * 109.39227 * 70.84778 * 21 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2018 2.0434 -1.1864
5 1 2.6067 3.0446 -1.1890
6 6 1.8666 1.4265 -2.3854
7 7 0.9407 0.4941 -2.4083
8 14 2.7321 1.9222 -3.9649
9 1 4.1900 1.6745 -3.8291
10 1 2.1974 1.1208 -5.0948
11 1 2.4975 3.3651 -4.2260
12 6 2.2874 2.0009 1.1662
13 8 2.0387 1.4495 2.2174
14 6 2.8914 3.3815 1.1640
15 6 2.0142 4.2931 0.4116
16 7 1.3372 4.9967 -0.1692
17 6 4.2590 3.3306 0.4893
18 6 4.7677 4.7513 0.2313
19 16 4.9913 5.5934 1.8263
20 6 3.3678 5.3675 2.6115
21 6 3.0168 3.8774 2.6016
22 1 -0.3633 -1.0195 -0.1288
23 1 -0.3633 0.3984 0.9473
24 1 -0.3633 0.6214 -0.8185
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 0.7071 0.0632 -3.2453
28 1 4.9624 2.8063 1.1361
29 1 4.1754 2.7985 -0.4584
30 1 4.0401 5.2961 -0.3705
31 1 5.7204 4.7100 -0.2967
32 1 2.6130 5.9244 2.0562
33 1 3.4042 5.7274 3.6398
34 1 2.0705 3.7251 3.1207
35 1 3.8013 3.3174 3.1105
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000930618539.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:27:34
Heat of formation + Delta-G solvation = -5.440857 kcal
Electronic energy + Delta-G solvation = -19569.804211 eV
Core-core repulsion = 16694.358463 eV
Total energy + Delta-G solvation = -2875.445747 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.58642 -38.57093 -37.22571 -36.01729 -33.61112 -32.74553 -31.75669 -29.19036
-26.85070 -24.43271 -23.98635 -23.19259 -21.45236 -19.61137 -18.80742 -17.76491
-16.68421 -16.49089 -16.31225 -16.00087 -15.55284 -15.24386 -14.79656 -14.52531
-14.39768 -14.17841 -13.93641 -13.81788 -13.58734 -13.39480 -13.27317 -13.04440
-12.83262 -12.56465 -12.49858 -12.43298 -12.20120 -12.15219 -11.64917 -11.33732
-10.90920 -10.69799 -10.33081 -9.86822 -8.66212 -8.36924 -5.88225 0.79595
1.30113 1.44576 1.49020 1.50493 1.56108 1.74306 1.93290 2.22583
2.70179 2.93129 3.05742 3.57170 3.69734 3.83518 3.90925 4.17645
4.30275 4.34194 4.51221 4.65107 4.71904 4.82219 4.85911 4.91637
4.93780 5.08240 5.10058 5.17086 5.35736 5.40126 5.71195 5.84857
6.37771 6.48456 7.03573 7.47583 7.87579 8.57645
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.020741 B = 0.008711 C = 0.006984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1349.630052 B = 3213.712461 C = 4007.985846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.137 3.863
3 N -0.432 5.432
4 C -0.366 4.366
5 H 0.111 0.889
6 C 0.013 3.987
7 N -0.856 5.856
8 Si 0.962 3.038
9 H -0.253 1.253
10 H -0.280 1.280
11 H -0.280 1.280
12 C 0.446 3.554
13 O -0.618 6.618
14 C 0.037 3.963
15 C 0.244 3.756
16 N -0.464 5.464
17 C -0.116 4.116
18 C -0.079 4.079
19 S -0.260 6.260
20 C -0.080 4.080
21 C -0.088 4.088
22 H 0.055 0.945
23 H 0.010 0.990
24 H 0.069 0.931
25 H 0.085 0.915
26 H 0.045 0.955
27 H 0.274 0.726
28 H 0.111 0.889
29 H 0.103 0.897
30 H 0.067 0.933
31 H 0.137 0.863
32 H 0.068 0.932
33 H 0.138 0.862
34 H 0.080 0.920
35 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.860 4.079 3.669 9.585
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.014 3.986
3 N -0.148 5.148
4 C -0.493 4.493
5 H 0.128 0.872
6 C -0.193 4.193
7 N -0.493 5.493
8 Si 0.785 3.215
9 H -0.177 1.177
10 H -0.205 1.205
11 H -0.205 1.205
12 C 0.233 3.767
13 O -0.507 6.507
14 C 0.030 3.970
15 C -0.073 4.073
16 N -0.141 5.141
17 C -0.156 4.156
18 C -0.227 4.227
19 S -0.034 6.034
20 C -0.228 4.228
21 C -0.128 4.128
22 H 0.074 0.926
23 H 0.029 0.971
24 H 0.088 0.912
25 H 0.103 0.897
26 H 0.063 0.937
27 H 0.084 0.916
28 H 0.129 0.871
29 H 0.121 0.879
30 H 0.085 0.915
31 H 0.155 0.845
32 H 0.086 0.914
33 H 0.156 0.844
34 H 0.099 0.901
35 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 7.487 5.236 3.506 9.786
hybrid contribution -1.151 -0.837 -1.327 1.946
sum 6.336 4.399 2.178 8.016
Atomic orbital electron populations
1.21864 0.96243 1.01236 0.99069 1.21237 0.94889 0.82537 0.99928
1.44063 1.53534 1.12064 1.05135 1.19912 1.44578 1.01766 0.83010
0.87161 1.25870 0.95033 0.96624 1.01794 1.70336 1.24044 1.26253
1.28622 0.85467 0.80176 0.78056 0.77770 1.17726 1.20545 1.20513
1.19632 0.85774 0.87552 0.83757 1.90540 1.60525 1.68023 1.31593
1.18453 0.93430 0.89289 0.95849 1.28696 0.93434 0.92663 0.92500
1.81101 1.09764 1.13225 1.09974 1.21991 0.92104 0.97442 1.04097
1.23526 1.06451 0.96468 0.96227 1.86580 1.21316 1.75367 1.20144
1.23558 0.95700 0.98087 1.05475 1.21561 1.05063 0.94585 0.91574
0.92574 0.97080 0.91202 0.89731 0.93678 0.91601 0.87055 0.87912
0.91470 0.84534 0.91363 0.84367 0.90141 0.87147
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.71 9.45 71.98 0.68 -5.03 16
2 C 0.14 6.27 5.36 86.38 0.46 6.74 16
3 N -0.43 -20.10 2.63 -635.55 -1.67 -21.76 16
4 C -0.37 -16.95 7.12 84.04 0.60 -16.35 16
5 H 0.11 4.94 3.92 -2.91 -0.01 4.93 16
6 C 0.01 0.58 4.95 84.92 0.42 1.00 16
7 N -0.86 -40.71 8.13 21.66 0.18 -40.53 16
8 Si 0.96 37.01 29.63 68.60 2.03 39.04 16
9 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16
10 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16
11 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16
12 C 0.45 19.62 6.40 87.65 0.56 20.18 16
13 O -0.62 -29.64 15.39 -3.05 -0.05 -29.69 16
14 C 0.04 1.30 0.46 -55.01 -0.03 1.28 16
15 C 0.24 9.64 7.33 89.44 0.66 10.30 16
16 N -0.46 -19.96 18.54 20.01 0.37 -19.59 16
17 C -0.12 -3.50 4.30 30.49 0.13 -3.37 16
18 C -0.08 -2.05 6.15 72.01 0.44 -1.61 16
19 S -0.26 -6.51 22.33 -56.49 -1.26 -7.77 16
20 C -0.08 -2.00 6.15 72.01 0.44 -1.56 16
21 C -0.09 -2.59 4.10 30.49 0.12 -2.47 16
22 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
23 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16
24 H 0.07 3.50 6.13 -2.39 -0.01 3.49 16
25 H 0.08 3.95 6.11 -2.39 -0.01 3.94 16
26 H 0.04 2.03 7.43 -2.39 -0.02 2.01 16
27 H 0.27 12.37 8.31 -92.71 -0.77 11.60 16
28 H 0.11 2.96 8.06 -2.39 -0.02 2.94 16
29 H 0.10 3.44 5.34 -2.38 -0.01 3.43 16
30 H 0.07 1.98 6.86 -2.39 -0.02 1.96 16
31 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16
32 H 0.07 1.90 6.86 -2.38 -0.02 1.89 16
33 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16
34 H 0.08 2.55 7.74 -2.39 -0.02 2.53 16
35 H 0.11 3.00 8.06 -2.39 -0.02 2.99 16
Total: -1.00 -55.31 287.14 5.21 -50.10
By element:
Atomic # 1 Polarization: 19.98 SS G_CDS: 1.11 Total: 21.10 kcal
Atomic # 6 Polarization: 4.61 SS G_CDS: 4.50 Total: 9.11 kcal
Atomic # 7 Polarization: -80.76 SS G_CDS: -1.12 Total: -81.88 kcal
Atomic # 8 Polarization: -29.64 SS G_CDS: -0.05 Total: -29.69 kcal
Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal
Atomic # 16 Polarization: -6.51 SS G_CDS: -1.26 Total: -7.77 kcal
Total: -55.31 5.21 -50.10 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930618539.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.656 kcal
(2) G-P(sol) polarization free energy of solvation -55.308 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.097 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.441 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds