Wall clock time and date at job start Mon Mar 30 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 O 1.20828 * 119.99823 * 119.99631 * 12 2 1 14 14 O 1.34224 * 120.00059 * 299.99952 * 12 2 1 15 15 C 1.45206 * 116.99841 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.46850 * 180.02562 * 15 14 12 17 17 H 1.09003 * 110.38415 * 307.38872 * 16 15 14 18 18 C 1.54728 * 110.42561 * 185.00187 * 16 15 14 19 19 C 1.53884 * 101.89260 * 214.86307 * 18 16 15 20 20 C 1.52329 * 121.20939 * 231.07355 * 19 18 16 21 21 C 1.52314 * 121.22822 * 159.07140 * 19 18 16 22 22 C 1.50706 * 105.54791 * 15.04215 * 19 18 16 23 23 O 1.20826 * 125.26388 * 182.36094 * 22 19 18 24 24 O 1.34296 * 109.47700 * 2.37652 * 22 19 18 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47195 * 300.00371 * 15 14 12 30 30 H 1.08991 * 109.46936 * 60.00159 * 15 14 12 31 31 H 1.08997 * 110.95090 * 333.01369 * 18 16 15 32 32 H 1.09006 * 110.94963 * 96.71661 * 18 16 15 33 33 H 1.09004 * 117.51780 * 356.77965 * 20 19 18 34 34 H 1.08998 * 117.52367 * 141.91804 * 20 19 18 35 35 H 1.09009 * 117.51940 * 218.06028 * 21 19 18 36 36 H 1.09002 * 117.51821 * 3.17683 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2269 -0.9864 3.5896 16 6 1.7549 -0.3199 4.8833 17 1 1.9979 0.7427 4.8736 18 6 2.3964 -1.0092 6.1111 19 6 1.2668 -0.9179 7.1522 20 6 1.5218 -0.3602 8.5466 21 6 1.2250 -1.8504 8.3558 22 6 0.0253 -0.5704 6.3718 23 8 -1.0666 -0.3726 6.8498 24 8 0.3201 -0.5149 5.0627 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7092 1.1618 -3.4843 29 1 1.8627 -2.0133 3.5565 30 1 3.3163 -0.9861 3.5568 31 1 2.6406 -2.0485 5.8912 32 1 3.2798 -0.4654 6.4460 33 1 2.5445 -0.0785 8.7971 34 1 0.7411 0.2555 8.9933 35 1 0.2491 -2.2148 8.6770 36 1 2.0526 -2.5488 8.4808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118406932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:21 Heat of formation + Delta-G solvation = -147.265133 kcal Electronic energy + Delta-G solvation = -20206.136422 eV Core-core repulsion = 16849.495090 eV Total energy + Delta-G solvation = -3356.641332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.40523 -39.60577 -37.73290 -37.06332 -35.77706 -33.89786 -32.06521 -30.57146 -27.97127 -25.20379 -24.47736 -23.05899 -22.91531 -22.06760 -20.15828 -19.83164 -17.40452 -16.95339 -16.77310 -16.25518 -16.00223 -15.86500 -15.38235 -15.13255 -14.44363 -14.19539 -13.44056 -13.26689 -13.16161 -12.94739 -12.55789 -12.24014 -12.06394 -11.98196 -11.53378 -11.12142 -11.06469 -10.87525 -10.76509 -10.69898 -10.49984 -10.35398 -10.28100 -10.17936 -10.06679 -9.17077 -9.03696 -8.46160 -6.11191 -4.16958 1.74147 2.91996 3.13389 3.24787 3.28788 3.35332 3.36919 3.44757 3.55944 3.97302 4.07658 4.31241 4.40946 4.64190 4.72520 4.78011 5.06389 5.12443 5.21588 5.22740 5.34077 5.37807 5.38951 5.58038 5.61690 6.08164 6.61775 6.68193 6.88463 6.89966 7.13821 7.30890 7.43638 7.74555 7.93971 8.13181 8.78692 8.92123 9.48724 10.96201 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.046551 B = 0.003605 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.348539 B = 7765.099155 C = 8128.546582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.467 3.533 13 O -0.517 6.517 14 O -0.360 6.360 15 C 0.063 3.937 16 C 0.090 3.910 17 H 0.110 0.890 18 C -0.112 4.112 19 C -0.222 4.222 20 C -0.132 4.132 21 C -0.131 4.131 22 C 0.514 3.486 23 O -0.455 6.455 24 O -0.324 6.324 25 H 0.025 0.975 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -1.696 20.250 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.312 3.688 13 O -0.404 6.404 14 O -0.278 6.278 15 C -0.011 4.011 16 C 0.035 3.965 17 H 0.127 0.873 18 C -0.149 4.149 19 C -0.224 4.224 20 C -0.169 4.169 21 C -0.168 4.168 22 C 0.354 3.646 23 O -0.338 6.338 24 O -0.240 6.240 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.277 -1.812 20.126 20.471 hybrid contribution 0.469 -0.548 -0.795 1.073 sum 3.747 -2.360 19.331 19.831 Atomic orbital electron populations 1.21735 0.95449 1.00149 1.01857 1.18788 0.94978 0.96981 0.85378 0.91732 1.21172 1.31924 1.13259 0.88755 0.90575 1.24944 0.94891 0.95023 0.99155 1.69892 1.36487 1.22799 1.23790 0.86325 0.78654 0.79694 0.82155 1.19517 1.20874 1.20890 1.25425 0.76388 0.83247 0.83736 1.90500 1.36498 1.26722 1.86691 1.86681 1.70499 1.55382 1.15241 1.22913 0.99123 0.96197 0.82913 1.23781 0.76324 1.01904 0.94499 0.87258 1.22442 0.97077 1.03409 0.91965 1.22307 0.96721 1.11279 0.92094 1.22962 1.03933 0.97005 0.92978 1.22908 1.04518 0.93321 0.96028 1.21848 0.88340 0.72648 0.81734 1.90689 1.26435 1.45202 1.71511 1.87259 1.27652 1.83492 1.25637 0.95596 0.88554 0.94971 0.92716 0.90438 0.89135 0.88395 0.87846 0.87157 0.87439 0.87493 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.90 37.16 0.33 -2.92 16 2 C 0.06 1.47 2.74 -92.92 -0.25 1.21 16 3 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.36 8.37 -34.44 -0.29 -14.65 16 5 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.47 10.82 7.25 36.01 0.26 11.08 16 13 O -0.52 -12.83 15.21 -18.75 -0.29 -13.11 16 14 O -0.36 -7.01 10.12 -39.69 -0.40 -7.41 16 15 C 0.06 0.91 5.12 37.16 0.19 1.10 16 16 C 0.09 1.03 3.84 -25.82 -0.10 0.93 16 17 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.11 -0.85 6.48 -25.36 -0.16 -1.01 16 19 C -0.22 -1.99 2.44 -155.89 -0.38 -2.37 16 20 C -0.13 -0.86 10.27 -27.00 -0.28 -1.14 16 21 C -0.13 -0.89 10.28 -27.01 -0.28 -1.16 16 22 C 0.51 7.06 8.34 36.01 0.30 7.36 16 23 O -0.45 -7.54 18.00 -18.38 -0.33 -7.87 16 24 O -0.32 -4.90 10.77 -39.54 -0.43 -5.32 16 25 H 0.02 0.56 8.11 -51.93 -0.42 0.14 16 26 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 30 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.10 0.66 7.93 -51.93 -0.41 0.25 16 32 H 0.10 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.79 8.14 -51.92 -0.42 0.36 16 36 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -32.80 314.20 -6.72 -39.52 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.86 Total: -2.72 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.75 Total: 0.02 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.63 Total: -24.22 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.44 Total: -33.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.80 -6.72 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118406932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.745 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds