Wall clock time and date at job start Mon Mar 30 2020 05:38:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3
5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1
6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1
7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2
9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4
10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4
11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4
12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3
13 13 O 1.20828 * 119.99823 * 119.99631 * 12 2 1
14 14 O 1.34224 * 120.00059 * 299.99952 * 12 2 1
15 15 C 1.45206 * 116.99841 * 179.97438 * 14 12 2
16 16 C 1.52996 * 109.46850 * 180.02562 * 15 14 12
17 17 H 1.09003 * 110.38415 * 307.38872 * 16 15 14
18 18 C 1.54728 * 110.42561 * 185.00187 * 16 15 14
19 19 C 1.53884 * 101.89260 * 214.86307 * 18 16 15
20 20 C 1.52329 * 121.20939 * 231.07355 * 19 18 16
21 21 C 1.52314 * 121.22822 * 159.07140 * 19 18 16
22 22 C 1.50706 * 105.54791 * 15.04215 * 19 18 16
23 23 O 1.20826 * 125.26388 * 182.36094 * 22 19 18
24 24 O 1.34296 * 109.47700 * 2.37652 * 22 19 18
25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3
26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3
27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4
29 29 H 1.09002 * 109.47195 * 300.00371 * 15 14 12
30 30 H 1.08991 * 109.46936 * 60.00159 * 15 14 12
31 31 H 1.08997 * 110.95090 * 333.01369 * 18 16 15
32 32 H 1.09006 * 110.94963 * 96.71661 * 18 16 15
33 33 H 1.09004 * 117.51780 * 356.77965 * 20 19 18
34 34 H 1.08998 * 117.52367 * 141.91804 * 20 19 18
35 35 H 1.09009 * 117.51940 * 218.06028 * 21 19 18
36 36 H 1.09002 * 117.51821 * 3.17683 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6991 -0.2393 -2.4827
7 7 0.9433 0.8302 -2.6034
8 14 2.3212 -1.1203 -4.0080
9 1 3.1454 -2.2876 -3.6039
10 1 1.1659 -1.5865 -4.8160
11 1 3.1464 -0.1873 -4.8165
12 6 2.0323 -0.7104 1.2305
13 8 2.7269 -1.6928 1.1196
14 8 1.7081 -0.2518 2.4496
15 6 2.2269 -0.9864 3.5896
16 6 1.7549 -0.3199 4.8833
17 1 1.9979 0.7427 4.8736
18 6 2.3964 -1.0092 6.1111
19 6 1.2668 -0.9179 7.1522
20 6 1.5218 -0.3602 8.5466
21 6 1.2250 -1.8504 8.3558
22 6 0.0253 -0.5704 6.3718
23 8 -1.0666 -0.3726 6.8498
24 8 0.3201 -0.5149 5.0627
25 1 -0.3634 0.5137 0.8900
26 1 -0.3635 0.5138 -0.8899
27 1 -0.3633 -1.0277 0.0005
28 1 0.7092 1.1618 -3.4843
29 1 1.8627 -2.0133 3.5565
30 1 3.3163 -0.9861 3.5568
31 1 2.6406 -2.0485 5.8912
32 1 3.2798 -0.4654 6.4460
33 1 2.5445 -0.0785 8.7971
34 1 0.7411 0.2555 8.9933
35 1 0.2491 -2.2148 8.6770
36 1 2.0526 -2.5488 8.4808
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118406932.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:38:21
Heat of formation + Delta-G solvation = -147.265133 kcal
Electronic energy + Delta-G solvation = -20206.136422 eV
Core-core repulsion = 16849.495090 eV
Total energy + Delta-G solvation = -3356.641332 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 268.119 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.40523 -39.60577 -37.73290 -37.06332 -35.77706 -33.89786 -32.06521 -30.57146
-27.97127 -25.20379 -24.47736 -23.05899 -22.91531 -22.06760 -20.15828 -19.83164
-17.40452 -16.95339 -16.77310 -16.25518 -16.00223 -15.86500 -15.38235 -15.13255
-14.44363 -14.19539 -13.44056 -13.26689 -13.16161 -12.94739 -12.55789 -12.24014
-12.06394 -11.98196 -11.53378 -11.12142 -11.06469 -10.87525 -10.76509 -10.69898
-10.49984 -10.35398 -10.28100 -10.17936 -10.06679 -9.17077 -9.03696 -8.46160
-6.11191 -4.16958 1.74147 2.91996 3.13389 3.24787 3.28788 3.35332
3.36919 3.44757 3.55944 3.97302 4.07658 4.31241 4.40946 4.64190
4.72520 4.78011 5.06389 5.12443 5.21588 5.22740 5.34077 5.37807
5.38951 5.58038 5.61690 6.08164 6.61775 6.68193 6.88463 6.89966
7.13821 7.30890 7.43638 7.74555 7.93971 8.13181 8.78692 8.92123
9.48724 10.96201
Molecular weight = 268.12amu
Principal moments of inertia in cm(-1)
A = 0.046551 B = 0.003605 C = 0.003444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 601.348539 B = 7765.099155 C = 8128.546582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.058 3.942
3 H 0.065 0.935
4 C -0.513 4.513
5 H 0.076 0.924
6 C 0.061 3.939
7 N -0.891 5.891
8 Si 0.904 3.096
9 H -0.271 1.271
10 H -0.283 1.283
11 H -0.283 1.283
12 C 0.467 3.533
13 O -0.517 6.517
14 O -0.360 6.360
15 C 0.063 3.937
16 C 0.090 3.910
17 H 0.110 0.890
18 C -0.112 4.112
19 C -0.222 4.222
20 C -0.132 4.132
21 C -0.131 4.131
22 C 0.514 3.486
23 O -0.455 6.455
24 O -0.324 6.324
25 H 0.025 0.975
26 H 0.096 0.904
27 H 0.031 0.969
28 H 0.263 0.737
29 H 0.077 0.923
30 H 0.091 0.909
31 H 0.098 0.902
32 H 0.103 0.897
33 H 0.110 0.890
34 H 0.107 0.893
35 H 0.107 0.893
36 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.801 -1.696 20.250 20.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.039 3.961
3 H 0.083 0.917
4 C -0.551 4.551
5 H 0.094 0.906
6 C -0.140 4.140
7 N -0.530 5.530
8 Si 0.732 3.268
9 H -0.195 1.195
10 H -0.209 1.209
11 H -0.209 1.209
12 C 0.312 3.688
13 O -0.404 6.404
14 O -0.278 6.278
15 C -0.011 4.011
16 C 0.035 3.965
17 H 0.127 0.873
18 C -0.149 4.149
19 C -0.224 4.224
20 C -0.169 4.169
21 C -0.168 4.168
22 C 0.354 3.646
23 O -0.338 6.338
24 O -0.240 6.240
25 H 0.044 0.956
26 H 0.114 0.886
27 H 0.050 0.950
28 H 0.073 0.927
29 H 0.096 0.904
30 H 0.109 0.891
31 H 0.116 0.884
32 H 0.122 0.878
33 H 0.128 0.872
34 H 0.126 0.874
35 H 0.125 0.875
36 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 3.277 -1.812 20.126 20.471
hybrid contribution 0.469 -0.548 -0.795 1.073
sum 3.747 -2.360 19.331 19.831
Atomic orbital electron populations
1.21735 0.95449 1.00149 1.01857 1.18788 0.94978 0.96981 0.85378
0.91732 1.21172 1.31924 1.13259 0.88755 0.90575 1.24944 0.94891
0.95023 0.99155 1.69892 1.36487 1.22799 1.23790 0.86325 0.78654
0.79694 0.82155 1.19517 1.20874 1.20890 1.25425 0.76388 0.83247
0.83736 1.90500 1.36498 1.26722 1.86691 1.86681 1.70499 1.55382
1.15241 1.22913 0.99123 0.96197 0.82913 1.23781 0.76324 1.01904
0.94499 0.87258 1.22442 0.97077 1.03409 0.91965 1.22307 0.96721
1.11279 0.92094 1.22962 1.03933 0.97005 0.92978 1.22908 1.04518
0.93321 0.96028 1.21848 0.88340 0.72648 0.81734 1.90689 1.26435
1.45202 1.71511 1.87259 1.27652 1.83492 1.25637 0.95596 0.88554
0.94971 0.92716 0.90438 0.89135 0.88395 0.87846 0.87157 0.87439
0.87493 0.87124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.25 8.90 37.16 0.33 -2.92 16
2 C 0.06 1.47 2.74 -92.92 -0.25 1.21 16
3 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16
4 C -0.51 -14.36 8.37 -34.44 -0.29 -14.65 16
5 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16
6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16
7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16
8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16
9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
12 C 0.47 10.82 7.25 36.01 0.26 11.08 16
13 O -0.52 -12.83 15.21 -18.75 -0.29 -13.11 16
14 O -0.36 -7.01 10.12 -39.69 -0.40 -7.41 16
15 C 0.06 0.91 5.12 37.16 0.19 1.10 16
16 C 0.09 1.03 3.84 -25.82 -0.10 0.93 16
17 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16
18 C -0.11 -0.85 6.48 -25.36 -0.16 -1.01 16
19 C -0.22 -1.99 2.44 -155.89 -0.38 -2.37 16
20 C -0.13 -0.86 10.27 -27.00 -0.28 -1.14 16
21 C -0.13 -0.89 10.28 -27.01 -0.28 -1.16 16
22 C 0.51 7.06 8.34 36.01 0.30 7.36 16
23 O -0.45 -7.54 18.00 -18.38 -0.33 -7.87 16
24 O -0.32 -4.90 10.77 -39.54 -0.43 -5.32 16
25 H 0.02 0.56 8.11 -51.93 -0.42 0.14 16
26 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16
27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16
29 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16
30 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16
31 H 0.10 0.66 7.93 -51.93 -0.41 0.25 16
32 H 0.10 0.51 8.13 -51.93 -0.42 0.09 16
33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16
34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.11 0.79 8.14 -51.92 -0.42 0.36 16
36 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16
LS Contribution 314.20 15.07 4.73 4.73
Total: -1.00 -32.80 314.20 -6.72 -39.52
By element:
Atomic # 1 Polarization: 2.15 SS G_CDS: -4.86 Total: -2.72 kcal
Atomic # 6 Polarization: 0.78 SS G_CDS: -0.75 Total: 0.02 kcal
Atomic # 7 Polarization: -24.85 SS G_CDS: 0.63 Total: -24.22 kcal
Atomic # 8 Polarization: -32.27 SS G_CDS: -1.44 Total: -33.71 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -32.80 -6.72 -39.52 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118406932.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -107.745 kcal
(2) G-P(sol) polarization free energy of solvation -32.799 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.544 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.265 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds