Wall clock time and date at job start Mon Mar 30 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 O 1.20828 * 119.99823 * 119.99631 * 12 2 1 14 14 O 1.34224 * 120.00059 * 299.99952 * 12 2 1 15 15 C 1.45206 * 116.99841 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.46850 * 180.02562 * 15 14 12 17 17 H 1.09003 * 110.38415 * 307.38872 * 16 15 14 18 18 C 1.54728 * 110.42561 * 185.00187 * 16 15 14 19 19 C 1.53884 * 101.89260 * 214.86307 * 18 16 15 20 20 C 1.52329 * 121.20939 * 231.07355 * 19 18 16 21 21 C 1.52314 * 121.22822 * 159.07140 * 19 18 16 22 22 C 1.50706 * 105.54791 * 15.04215 * 19 18 16 23 23 O 1.20826 * 125.26388 * 182.36094 * 22 19 18 24 24 O 1.34296 * 109.47700 * 2.37652 * 22 19 18 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47195 * 300.00371 * 15 14 12 30 30 H 1.08991 * 109.46936 * 60.00159 * 15 14 12 31 31 H 1.08997 * 110.95090 * 333.01369 * 18 16 15 32 32 H 1.09006 * 110.94963 * 96.71661 * 18 16 15 33 33 H 1.09004 * 117.51780 * 356.77965 * 20 19 18 34 34 H 1.08998 * 117.52367 * 141.91804 * 20 19 18 35 35 H 1.09009 * 117.51940 * 218.06028 * 21 19 18 36 36 H 1.09002 * 117.51821 * 3.17683 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2269 -0.9864 3.5896 16 6 1.7549 -0.3199 4.8833 17 1 1.9979 0.7427 4.8736 18 6 2.3964 -1.0092 6.1111 19 6 1.2668 -0.9179 7.1522 20 6 1.5218 -0.3602 8.5466 21 6 1.2250 -1.8504 8.3558 22 6 0.0253 -0.5704 6.3718 23 8 -1.0666 -0.3726 6.8498 24 8 0.3201 -0.5149 5.0627 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7092 1.1618 -3.4843 29 1 1.8627 -2.0133 3.5565 30 1 3.3163 -0.9861 3.5568 31 1 2.6406 -2.0485 5.8912 32 1 3.2798 -0.4654 6.4460 33 1 2.5445 -0.0785 8.7971 34 1 0.7411 0.2555 8.9933 35 1 0.2491 -2.2148 8.6770 36 1 2.0526 -2.5488 8.4808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118406932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:21 Heat of formation + Delta-G solvation = -166.303441 kcal Electronic energy + Delta-G solvation = -20206.961984 eV Core-core repulsion = 16849.495090 eV Total energy + Delta-G solvation = -3357.466895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.34700 -41.30260 -38.86891 -37.77312 -37.42287 -35.93207 -33.17834 -32.46076 -28.90977 -27.29638 -25.69695 -24.52817 -23.56257 -22.97727 -21.67907 -21.00222 -18.71771 -18.31973 -18.08776 -17.82979 -17.56298 -17.21100 -16.75031 -16.17191 -15.98292 -15.31061 -14.81057 -14.59224 -14.28474 -14.01543 -13.80842 -13.61963 -13.39774 -13.12642 -12.98415 -12.73527 -12.62242 -12.45098 -12.31364 -12.06371 -11.86055 -11.70529 -11.68713 -11.24911 -11.12774 -11.10794 -11.03078 -10.54240 -8.20488 -6.34139 0.78173 1.39754 1.42917 1.43383 1.55756 1.78528 1.98954 2.43216 2.70151 2.80578 3.09771 3.20382 3.31412 3.68241 3.84202 3.92014 3.98504 4.19912 4.29458 4.46542 4.59026 4.66472 4.69029 4.81237 4.85966 4.88394 4.92536 4.97804 5.16207 5.34450 5.43294 5.66251 5.67936 5.86142 6.08493 6.29243 6.73011 7.01462 7.35058 8.86335 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.046551 B = 0.003605 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.348539 B = 7765.099155 C = 8128.546582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.272 1.272 12 C 0.476 3.524 13 O -0.538 6.538 14 O -0.363 6.363 15 C 0.055 3.945 16 C 0.088 3.912 17 H 0.123 0.877 18 C -0.094 4.094 19 C -0.235 4.235 20 C -0.116 4.116 21 C -0.123 4.123 22 C 0.504 3.496 23 O -0.501 6.501 24 O -0.363 6.363 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.268 0.732 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 -2.097 21.632 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.790 3.210 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.428 6.428 14 O -0.281 6.281 15 C -0.018 4.018 16 C 0.033 3.967 17 H 0.140 0.860 18 C -0.131 4.131 19 C -0.236 4.236 20 C -0.152 4.152 21 C -0.159 4.159 22 C 0.348 3.652 23 O -0.388 6.388 24 O -0.280 6.280 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.145 -2.199 21.528 22.243 hybrid contribution -0.154 -0.399 -1.143 1.220 sum 4.991 -2.598 20.385 21.148 Atomic orbital electron populations 1.21562 0.94845 0.99725 1.01791 1.18690 0.95533 0.96427 0.86414 0.92853 1.21297 1.32576 1.13302 0.90384 0.92273 1.25678 0.94872 0.95651 1.01711 1.69975 1.36722 1.23492 1.24715 0.85387 0.78312 0.78563 0.78697 1.19860 1.20049 1.19775 1.24749 0.75944 0.82586 0.84584 1.90477 1.37439 1.27500 1.87354 1.86604 1.70372 1.55761 1.15317 1.23387 1.00689 0.95790 0.81952 1.24022 0.75141 1.03008 0.94510 0.85952 1.22516 0.97308 1.04279 0.88979 1.22265 0.94366 1.13985 0.93024 1.23160 1.05482 0.96596 0.90008 1.23095 1.05088 0.94153 0.93611 1.22651 0.89329 0.71431 0.81802 1.90644 1.28653 1.47297 1.72166 1.87191 1.30032 1.83563 1.27236 0.93784 0.90344 0.95458 0.92271 0.91008 0.86583 0.87221 0.83978 0.83756 0.88513 0.88741 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.90 71.98 0.64 -5.33 16 2 C 0.05 2.50 2.74 -12.29 -0.03 2.47 16 3 H 0.05 2.85 8.14 -2.39 -0.02 2.83 16 4 C -0.54 -30.57 8.37 25.60 0.21 -30.36 16 5 H 0.06 3.50 6.76 -2.91 -0.02 3.49 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -50.97 11.32 21.45 0.24 -50.72 16 8 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 C 0.48 22.18 7.25 71.24 0.52 22.69 16 13 O -0.54 -26.80 15.21 21.96 0.33 -26.47 16 14 O -0.36 -14.00 10.12 -50.93 -0.52 -14.52 16 15 C 0.06 1.51 5.12 71.98 0.37 1.88 16 16 C 0.09 1.85 3.84 31.18 0.12 1.97 16 17 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.09 -1.07 6.48 31.48 0.20 -0.87 16 19 C -0.23 -3.63 2.44 -53.08 -0.13 -3.76 16 20 C -0.12 -1.12 10.27 30.42 0.31 -0.80 16 21 C -0.12 -1.29 10.28 30.41 0.31 -0.98 16 22 C 0.50 13.87 8.34 71.24 0.59 14.46 16 23 O -0.50 -17.26 18.00 21.62 0.39 -16.87 16 24 O -0.36 -11.00 10.77 -51.96 -0.56 -11.56 16 25 H 0.04 1.94 8.11 -2.39 -0.02 1.92 16 26 H 0.08 4.14 6.07 -2.39 -0.01 4.12 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 30 H 0.12 2.59 8.13 -2.39 -0.02 2.57 16 31 H 0.11 1.03 7.93 -2.39 -0.02 1.01 16 32 H 0.14 0.58 8.13 -2.38 -0.02 0.56 16 33 H 0.14 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16 36 H 0.14 0.67 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -73.36 314.20 6.57 -66.80 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.08 Total: 4.56 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 3.57 Total: 2.96 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.24 Total: -50.72 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: -0.35 Total: -69.41 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -73.36 6.57 -66.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118406932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.508 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds