Wall clock time and date at job start Mon Mar 30 2020 05:38:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3
5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1
6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1
7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2
9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4
10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4
11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4
12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3
13 13 O 1.20828 * 119.99823 * 119.99631 * 12 2 1
14 14 O 1.34224 * 120.00059 * 299.99952 * 12 2 1
15 15 C 1.45206 * 116.99841 * 179.97438 * 14 12 2
16 16 C 1.52996 * 109.46850 * 180.02562 * 15 14 12
17 17 H 1.09003 * 110.38415 * 307.38872 * 16 15 14
18 18 C 1.54728 * 110.42561 * 185.00187 * 16 15 14
19 19 C 1.53884 * 101.89260 * 214.86307 * 18 16 15
20 20 C 1.52329 * 121.20939 * 231.07355 * 19 18 16
21 21 C 1.52314 * 121.22822 * 159.07140 * 19 18 16
22 22 C 1.50706 * 105.54791 * 15.04215 * 19 18 16
23 23 O 1.20826 * 125.26388 * 182.36094 * 22 19 18
24 24 O 1.34296 * 109.47700 * 2.37652 * 22 19 18
25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3
26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3
27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4
29 29 H 1.09002 * 109.47195 * 300.00371 * 15 14 12
30 30 H 1.08991 * 109.46936 * 60.00159 * 15 14 12
31 31 H 1.08997 * 110.95090 * 333.01369 * 18 16 15
32 32 H 1.09006 * 110.94963 * 96.71661 * 18 16 15
33 33 H 1.09004 * 117.51780 * 356.77965 * 20 19 18
34 34 H 1.08998 * 117.52367 * 141.91804 * 20 19 18
35 35 H 1.09009 * 117.51940 * 218.06028 * 21 19 18
36 36 H 1.09002 * 117.51821 * 3.17683 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6991 -0.2393 -2.4827
7 7 0.9433 0.8302 -2.6034
8 14 2.3212 -1.1203 -4.0080
9 1 3.1454 -2.2876 -3.6039
10 1 1.1659 -1.5865 -4.8160
11 1 3.1464 -0.1873 -4.8165
12 6 2.0323 -0.7104 1.2305
13 8 2.7269 -1.6928 1.1196
14 8 1.7081 -0.2518 2.4496
15 6 2.2269 -0.9864 3.5896
16 6 1.7549 -0.3199 4.8833
17 1 1.9979 0.7427 4.8736
18 6 2.3964 -1.0092 6.1111
19 6 1.2668 -0.9179 7.1522
20 6 1.5218 -0.3602 8.5466
21 6 1.2250 -1.8504 8.3558
22 6 0.0253 -0.5704 6.3718
23 8 -1.0666 -0.3726 6.8498
24 8 0.3201 -0.5149 5.0627
25 1 -0.3634 0.5137 0.8900
26 1 -0.3635 0.5138 -0.8899
27 1 -0.3633 -1.0277 0.0005
28 1 0.7092 1.1618 -3.4843
29 1 1.8627 -2.0133 3.5565
30 1 3.3163 -0.9861 3.5568
31 1 2.6406 -2.0485 5.8912
32 1 3.2798 -0.4654 6.4460
33 1 2.5445 -0.0785 8.7971
34 1 0.7411 0.2555 8.9933
35 1 0.2491 -2.2148 8.6770
36 1 2.0526 -2.5488 8.4808
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118406932.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:38:21
Heat of formation + Delta-G solvation = -166.303441 kcal
Electronic energy + Delta-G solvation = -20206.961984 eV
Core-core repulsion = 16849.495090 eV
Total energy + Delta-G solvation = -3357.466895 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 268.119 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-42.34700 -41.30260 -38.86891 -37.77312 -37.42287 -35.93207 -33.17834 -32.46076
-28.90977 -27.29638 -25.69695 -24.52817 -23.56257 -22.97727 -21.67907 -21.00222
-18.71771 -18.31973 -18.08776 -17.82979 -17.56298 -17.21100 -16.75031 -16.17191
-15.98292 -15.31061 -14.81057 -14.59224 -14.28474 -14.01543 -13.80842 -13.61963
-13.39774 -13.12642 -12.98415 -12.73527 -12.62242 -12.45098 -12.31364 -12.06371
-11.86055 -11.70529 -11.68713 -11.24911 -11.12774 -11.10794 -11.03078 -10.54240
-8.20488 -6.34139 0.78173 1.39754 1.42917 1.43383 1.55756 1.78528
1.98954 2.43216 2.70151 2.80578 3.09771 3.20382 3.31412 3.68241
3.84202 3.92014 3.98504 4.19912 4.29458 4.46542 4.59026 4.66472
4.69029 4.81237 4.85966 4.88394 4.92536 4.97804 5.16207 5.34450
5.43294 5.66251 5.67936 5.86142 6.08493 6.29243 6.73011 7.01462
7.35058 8.86335
Molecular weight = 268.12amu
Principal moments of inertia in cm(-1)
A = 0.046551 B = 0.003605 C = 0.003444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 601.348539 B = 7765.099155 C = 8128.546582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.048 3.952
3 H 0.054 0.946
4 C -0.538 4.538
5 H 0.059 0.941
6 C 0.021 3.979
7 N -0.911 5.911
8 Si 0.966 3.034
9 H -0.274 1.274
10 H -0.275 1.275
11 H -0.272 1.272
12 C 0.476 3.524
13 O -0.538 6.538
14 O -0.363 6.363
15 C 0.055 3.945
16 C 0.088 3.912
17 H 0.123 0.877
18 C -0.094 4.094
19 C -0.235 4.235
20 C -0.116 4.116
21 C -0.123 4.123
22 C 0.504 3.496
23 O -0.501 6.501
24 O -0.363 6.363
25 H 0.043 0.957
26 H 0.078 0.922
27 H 0.026 0.974
28 H 0.268 0.732
29 H 0.072 0.928
30 H 0.116 0.884
31 H 0.109 0.891
32 H 0.142 0.858
33 H 0.145 0.855
34 H 0.096 0.904
35 H 0.094 0.906
36 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.664 -2.097 21.632 22.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.029 3.971
3 H 0.071 0.929
4 C -0.576 4.576
5 H 0.077 0.923
6 C -0.179 4.179
7 N -0.549 5.549
8 Si 0.790 3.210
9 H -0.199 1.199
10 H -0.200 1.200
11 H -0.198 1.198
12 C 0.321 3.679
13 O -0.428 6.428
14 O -0.281 6.281
15 C -0.018 4.018
16 C 0.033 3.967
17 H 0.140 0.860
18 C -0.131 4.131
19 C -0.236 4.236
20 C -0.152 4.152
21 C -0.159 4.159
22 C 0.348 3.652
23 O -0.388 6.388
24 O -0.280 6.280
25 H 0.062 0.938
26 H 0.097 0.903
27 H 0.045 0.955
28 H 0.077 0.923
29 H 0.090 0.910
30 H 0.134 0.866
31 H 0.128 0.872
32 H 0.160 0.840
33 H 0.162 0.838
34 H 0.115 0.885
35 H 0.113 0.887
36 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 5.145 -2.199 21.528 22.243
hybrid contribution -0.154 -0.399 -1.143 1.220
sum 4.991 -2.598 20.385 21.148
Atomic orbital electron populations
1.21562 0.94845 0.99725 1.01791 1.18690 0.95533 0.96427 0.86414
0.92853 1.21297 1.32576 1.13302 0.90384 0.92273 1.25678 0.94872
0.95651 1.01711 1.69975 1.36722 1.23492 1.24715 0.85387 0.78312
0.78563 0.78697 1.19860 1.20049 1.19775 1.24749 0.75944 0.82586
0.84584 1.90477 1.37439 1.27500 1.87354 1.86604 1.70372 1.55761
1.15317 1.23387 1.00689 0.95790 0.81952 1.24022 0.75141 1.03008
0.94510 0.85952 1.22516 0.97308 1.04279 0.88979 1.22265 0.94366
1.13985 0.93024 1.23160 1.05482 0.96596 0.90008 1.23095 1.05088
0.94153 0.93611 1.22651 0.89329 0.71431 0.81802 1.90644 1.28653
1.47297 1.72166 1.87191 1.30032 1.83563 1.27236 0.93784 0.90344
0.95458 0.92271 0.91008 0.86583 0.87221 0.83978 0.83756 0.88513
0.88741 0.84162
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.97 8.90 71.98 0.64 -5.33 16
2 C 0.05 2.50 2.74 -12.29 -0.03 2.47 16
3 H 0.05 2.85 8.14 -2.39 -0.02 2.83 16
4 C -0.54 -30.57 8.37 25.60 0.21 -30.36 16
5 H 0.06 3.50 6.76 -2.91 -0.02 3.49 16
6 C 0.02 1.14 5.30 84.65 0.45 1.59 16
7 N -0.91 -50.97 11.32 21.45 0.24 -50.72 16
8 Si 0.97 43.79 29.54 68.60 2.03 45.82 16
9 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16
10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16
11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
12 C 0.48 22.18 7.25 71.24 0.52 22.69 16
13 O -0.54 -26.80 15.21 21.96 0.33 -26.47 16
14 O -0.36 -14.00 10.12 -50.93 -0.52 -14.52 16
15 C 0.06 1.51 5.12 71.98 0.37 1.88 16
16 C 0.09 1.85 3.84 31.18 0.12 1.97 16
17 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16
18 C -0.09 -1.07 6.48 31.48 0.20 -0.87 16
19 C -0.23 -3.63 2.44 -53.08 -0.13 -3.76 16
20 C -0.12 -1.12 10.27 30.42 0.31 -0.80 16
21 C -0.12 -1.29 10.28 30.41 0.31 -0.98 16
22 C 0.50 13.87 8.34 71.24 0.59 14.46 16
23 O -0.50 -17.26 18.00 21.62 0.39 -16.87 16
24 O -0.36 -11.00 10.77 -51.96 -0.56 -11.56 16
25 H 0.04 1.94 8.11 -2.39 -0.02 1.92 16
26 H 0.08 4.14 6.07 -2.39 -0.01 4.12 16
27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16
28 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16
29 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16
30 H 0.12 2.59 8.13 -2.39 -0.02 2.57 16
31 H 0.11 1.03 7.93 -2.39 -0.02 1.01 16
32 H 0.14 0.58 8.13 -2.38 -0.02 0.56 16
33 H 0.14 0.45 8.14 -2.38 -0.02 0.43 16
34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16
36 H 0.14 0.67 8.14 -2.39 -0.02 0.66 16
Total: -1.00 -73.36 314.20 6.57 -66.80
By element:
Atomic # 1 Polarization: 3.47 SS G_CDS: 1.08 Total: 4.56 kcal
Atomic # 6 Polarization: -0.61 SS G_CDS: 3.57 Total: 2.96 kcal
Atomic # 7 Polarization: -50.97 SS G_CDS: 0.24 Total: -50.72 kcal
Atomic # 8 Polarization: -69.06 SS G_CDS: -0.35 Total: -69.41 kcal
Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal
Total: -73.36 6.57 -66.80 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118406932.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.508 kcal
(2) G-P(sol) polarization free energy of solvation -73.364 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.872 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.795 kcal
(6) G-S(sol) free energy of system = (1) + (5) -166.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds