Wall clock time and date at job start Mon Mar 30 2020 05:38:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 109.47073 * 2 1
4 4 C 1.50699 * 109.47416 * 239.99812 * 2 1 3
5 5 H 1.07997 * 120.00414 * 240.00335 * 4 2 1
6 6 C 1.37882 * 119.99747 * 60.00049 * 4 2 1
7 7 N 1.31512 * 120.00287 * 0.02562 * 6 4 2
8 8 Si 1.86799 * 119.99778 * 180.02562 * 6 4 2
9 9 H 1.48498 * 109.47288 * 59.99916 * 8 6 4
10 10 H 1.48500 * 109.47117 * 180.02562 * 8 6 4
11 11 H 1.48505 * 109.47334 * 299.99878 * 8 6 4
12 12 C 1.50703 * 109.47145 * 120.00051 * 2 1 3
13 13 O 1.20818 * 120.00153 * 120.00161 * 12 2 1
14 14 O 1.34238 * 119.99497 * 300.00107 * 12 2 1
15 15 C 1.45203 * 116.99529 * 179.97438 * 14 12 2
16 16 C 1.53001 * 109.46719 * 179.97438 * 15 14 12
17 17 H 1.08996 * 110.37952 * 52.61353 * 16 15 14
18 18 C 1.54732 * 110.42200 * 175.00157 * 16 15 14
19 19 C 1.53892 * 101.88769 * 145.14257 * 18 16 15
20 20 C 1.52334 * 121.19488 * 128.88833 * 19 18 16
21 21 C 1.52314 * 121.23410 * 200.88355 * 19 18 16
22 22 C 1.50701 * 105.54517 * 344.94468 * 19 18 16
23 23 O 1.20833 * 125.25749 * 177.60839 * 22 19 18
24 24 O 1.34298 * 109.48146 * 357.87748 * 22 19 18
25 25 H 1.08997 * 109.47151 * 300.00385 * 1 2 3
26 26 H 1.09004 * 109.46640 * 60.00479 * 1 2 3
27 27 H 1.08993 * 109.46738 * 179.97438 * 1 2 3
28 28 H 0.96992 * 120.00244 * 180.02562 * 7 6 4
29 29 H 1.09001 * 109.46723 * 60.00383 * 15 14 12
30 30 H 1.08999 * 109.47372 * 300.00519 * 15 14 12
31 31 H 1.08997 * 110.95065 * 26.99155 * 18 16 15
32 32 H 1.08998 * 110.94571 * 263.28740 * 18 16 15
33 33 H 1.08996 * 117.51333 * 218.10655 * 20 19 18
34 34 H 1.08998 * 117.51585 * 3.22385 * 20 19 18
35 35 H 1.08996 * 117.51713 * 356.84410 * 21 19 18
36 36 H 1.08999 * 117.51028 * 141.95850 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9437 0.8302 -2.6035
8 14 2.3215 -1.1204 -4.0079
9 1 1.8260 -2.5203 -4.0077
10 1 1.8271 -0.4200 -5.2204
11 1 3.8065 -1.1210 -4.0081
12 6 2.0324 -0.7104 1.2305
13 8 2.7270 -1.6927 1.1196
14 8 1.7080 -0.2517 2.4496
15 6 2.2267 -0.9863 3.5897
16 6 1.7557 -0.3189 4.8834
17 1 0.6730 -0.1931 4.8732
18 6 2.1907 -1.1541 6.1112
19 6 2.4816 -0.0590 7.1526
20 6 1.8694 -0.1131 8.5464
21 6 3.3732 -0.3313 8.3570
22 6 2.5692 1.2273 6.3723
23 8 2.7467 2.3226 6.8507
24 8 2.4135 0.9688 5.0637
25 1 -0.3633 0.5139 0.8899
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3632 -1.0276 -0.0005
28 1 0.7091 1.1613 -3.4844
29 1 3.3162 -0.9859 3.5569
30 1 1.8626 -2.0131 3.5566
31 1 3.0889 -1.7313 5.8915
32 1 1.3830 -1.8051 6.4456
33 1 1.5493 0.8284 8.9927
34 1 1.2618 -0.9830 8.7962
35 1 3.7548 -1.3446 8.4823
36 1 4.0423 0.4667 8.6788
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118406948.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:38:28
Heat of formation + Delta-G solvation = -147.321570 kcal
Electronic energy + Delta-G solvation = -20178.282553 eV
Core-core repulsion = 16821.638774 eV
Total energy + Delta-G solvation = -3356.643779 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 268.119 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.41430 -39.60650 -37.74034 -37.06691 -35.77864 -33.90353 -32.06401 -30.58125
-27.97399 -25.21692 -24.48719 -23.06014 -22.91973 -22.07703 -20.17257 -19.81705
-17.44107 -16.96146 -16.70656 -16.30393 -16.05368 -15.75864 -15.33180 -15.25038
-14.47306 -14.12178 -13.54206 -13.29227 -13.09484 -12.85273 -12.60267 -12.36044
-12.01200 -11.97030 -11.53363 -11.12162 -11.05285 -10.86737 -10.81820 -10.71537
-10.50021 -10.37169 -10.28523 -10.17889 -10.06868 -9.17546 -9.06833 -8.45445
-6.10972 -4.16950 1.73975 2.91761 3.13509 3.24917 3.32298 3.34993
3.35681 3.41855 3.55811 3.97257 4.07493 4.31167 4.40852 4.64252
4.72524 4.78136 5.06386 5.12414 5.21472 5.22894 5.34131 5.37842
5.38906 5.58067 5.61673 6.07788 6.62139 6.65495 6.84429 6.86182
7.12965 7.30576 7.42480 7.73038 7.93072 8.12681 8.78488 8.91484
9.48590 10.96413
Molecular weight = 268.12amu
Principal moments of inertia in cm(-1)
A = 0.045234 B = 0.003555 C = 0.003456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.848004 B = 7874.023144 C = 8099.306649
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.057 3.943
3 H 0.066 0.934
4 C -0.515 4.515
5 H 0.075 0.925
6 C 0.062 3.938
7 N -0.892 5.892
8 Si 0.906 3.094
9 H -0.275 1.275
10 H -0.286 1.286
11 H -0.275 1.275
12 C 0.468 3.532
13 O -0.517 6.517
14 O -0.360 6.360
15 C 0.063 3.937
16 C 0.090 3.910
17 H 0.109 0.891
18 C -0.112 4.112
19 C -0.222 4.222
20 C -0.132 4.132
21 C -0.131 4.131
22 C 0.515 3.485
23 O -0.455 6.455
24 O -0.325 6.325
25 H 0.024 0.976
26 H 0.096 0.904
27 H 0.031 0.969
28 H 0.264 0.736
29 H 0.077 0.923
30 H 0.091 0.909
31 H 0.098 0.902
32 H 0.103 0.897
33 H 0.107 0.893
34 H 0.110 0.890
35 H 0.110 0.890
36 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.162 -4.477 20.222 20.712
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.039 3.961
3 H 0.084 0.916
4 C -0.553 4.553
5 H 0.093 0.907
6 C -0.140 4.140
7 N -0.530 5.530
8 Si 0.733 3.267
9 H -0.201 1.201
10 H -0.212 1.212
11 H -0.201 1.201
12 C 0.312 3.688
13 O -0.404 6.404
14 O -0.278 6.278
15 C -0.011 4.011
16 C 0.035 3.965
17 H 0.127 0.873
18 C -0.149 4.149
19 C -0.224 4.224
20 C -0.169 4.169
21 C -0.168 4.168
22 C 0.355 3.645
23 O -0.338 6.338
24 O -0.241 6.241
25 H 0.043 0.957
26 H 0.115 0.885
27 H 0.050 0.950
28 H 0.074 0.926
29 H 0.096 0.904
30 H 0.109 0.891
31 H 0.116 0.884
32 H 0.122 0.878
33 H 0.126 0.874
34 H 0.128 0.872
35 H 0.129 0.871
36 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 0.114 -4.014 20.093 20.490
hybrid contribution 0.387 -0.641 -0.786 1.086
sum 0.501 -4.655 19.306 19.866
Atomic orbital electron populations
1.21735 0.95552 1.00004 1.01837 1.18781 0.94909 0.97098 0.85359
0.91647 1.21088 1.32101 1.13303 0.88780 0.90683 1.24939 0.94883
0.95003 0.99134 1.69866 1.36391 1.22719 1.24016 0.86424 0.79305
0.79621 0.81313 1.20089 1.21205 1.20074 1.25416 0.76485 0.83127
0.83733 1.90496 1.36412 1.26822 1.86691 1.86685 1.70244 1.55634
1.15238 1.22915 1.00166 0.95146 0.82911 1.23751 0.98294 0.79965
0.94499 0.87294 1.22444 1.04109 0.96385 0.91956 1.22307 1.11775
0.96244 0.92094 1.22962 0.96363 1.04569 0.92974 1.22905 0.93830
1.04019 0.96009 1.21849 0.72315 0.88683 0.81693 1.90692 1.44637
1.27062 1.71444 1.87213 1.71887 1.39249 1.25709 0.95719 0.88529
0.94987 0.92589 0.90440 0.89136 0.88392 0.87844 0.87439 0.87153
0.87123 0.87490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.13 8.90 37.16 0.33 -2.80 16
2 C 0.06 1.46 2.74 -92.92 -0.25 1.21 16
3 H 0.07 1.74 8.14 -51.92 -0.42 1.32 16
4 C -0.51 -14.42 8.37 -34.44 -0.29 -14.71 16
5 H 0.08 2.17 6.76 -52.49 -0.35 1.82 16
6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16
7 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16
8 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16
9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16
11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
12 C 0.47 10.84 7.25 36.01 0.26 11.10 16
13 O -0.52 -12.82 15.21 -18.74 -0.29 -13.11 16
14 O -0.36 -7.01 10.12 -39.74 -0.40 -7.42 16
15 C 0.06 0.91 5.12 37.16 0.19 1.10 16
16 C 0.09 1.04 3.84 -25.82 -0.10 0.94 16
17 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16
18 C -0.11 -0.85 6.48 -25.35 -0.16 -1.01 16
19 C -0.22 -1.99 2.44 -155.89 -0.38 -2.37 16
20 C -0.13 -0.86 10.27 -27.00 -0.28 -1.14 16
21 C -0.13 -0.88 10.28 -27.01 -0.28 -1.16 16
22 C 0.51 7.05 8.35 36.01 0.30 7.36 16
23 O -0.45 -7.53 18.00 -18.39 -0.33 -7.86 16
24 O -0.32 -4.89 10.76 -39.55 -0.43 -5.32 16
25 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16
26 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16
27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
28 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16
29 H 0.08 1.14 8.13 -51.93 -0.42 0.71 16
30 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16
31 H 0.10 0.66 7.93 -51.93 -0.41 0.25 16
32 H 0.10 0.52 8.13 -51.93 -0.42 0.10 16
33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16
35 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16
LS Contribution 314.19 15.07 4.73 4.73
Total: -1.00 -32.70 314.19 -6.72 -39.42
By element:
Atomic # 1 Polarization: 2.14 SS G_CDS: -4.86 Total: -2.73 kcal
Atomic # 6 Polarization: 0.86 SS G_CDS: -0.75 Total: 0.11 kcal
Atomic # 7 Polarization: -24.87 SS G_CDS: 0.63 Total: -24.24 kcal
Atomic # 8 Polarization: -32.26 SS G_CDS: -1.44 Total: -33.70 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -32.70 -6.72 -39.42 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118406948.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -107.903 kcal
(2) G-P(sol) polarization free energy of solvation -32.698 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.601 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.322 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds