Wall clock time and date at job start Mon Mar 30 2020 05:38:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 109.47073 * 2 1
4 4 C 1.50699 * 109.47416 * 239.99812 * 2 1 3
5 5 H 1.07997 * 120.00414 * 240.00335 * 4 2 1
6 6 C 1.37882 * 119.99747 * 60.00049 * 4 2 1
7 7 N 1.31512 * 120.00287 * 0.02562 * 6 4 2
8 8 Si 1.86799 * 119.99778 * 180.02562 * 6 4 2
9 9 H 1.48498 * 109.47288 * 59.99916 * 8 6 4
10 10 H 1.48500 * 109.47117 * 180.02562 * 8 6 4
11 11 H 1.48505 * 109.47334 * 299.99878 * 8 6 4
12 12 C 1.50703 * 109.47145 * 120.00051 * 2 1 3
13 13 O 1.20818 * 120.00153 * 120.00161 * 12 2 1
14 14 O 1.34238 * 119.99497 * 300.00107 * 12 2 1
15 15 C 1.45203 * 116.99529 * 179.97438 * 14 12 2
16 16 C 1.53001 * 109.46719 * 179.97438 * 15 14 12
17 17 H 1.08996 * 110.37952 * 52.61353 * 16 15 14
18 18 C 1.54732 * 110.42200 * 175.00157 * 16 15 14
19 19 C 1.53892 * 101.88769 * 145.14257 * 18 16 15
20 20 C 1.52334 * 121.19488 * 128.88833 * 19 18 16
21 21 C 1.52314 * 121.23410 * 200.88355 * 19 18 16
22 22 C 1.50701 * 105.54517 * 344.94468 * 19 18 16
23 23 O 1.20833 * 125.25749 * 177.60839 * 22 19 18
24 24 O 1.34298 * 109.48146 * 357.87748 * 22 19 18
25 25 H 1.08997 * 109.47151 * 300.00385 * 1 2 3
26 26 H 1.09004 * 109.46640 * 60.00479 * 1 2 3
27 27 H 1.08993 * 109.46738 * 179.97438 * 1 2 3
28 28 H 0.96992 * 120.00244 * 180.02562 * 7 6 4
29 29 H 1.09001 * 109.46723 * 60.00383 * 15 14 12
30 30 H 1.08999 * 109.47372 * 300.00519 * 15 14 12
31 31 H 1.08997 * 110.95065 * 26.99155 * 18 16 15
32 32 H 1.08998 * 110.94571 * 263.28740 * 18 16 15
33 33 H 1.08996 * 117.51333 * 218.10655 * 20 19 18
34 34 H 1.08998 * 117.51585 * 3.22385 * 20 19 18
35 35 H 1.08996 * 117.51713 * 356.84410 * 21 19 18
36 36 H 1.08999 * 117.51028 * 141.95850 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9437 0.8302 -2.6035
8 14 2.3215 -1.1204 -4.0079
9 1 1.8260 -2.5203 -4.0077
10 1 1.8271 -0.4200 -5.2204
11 1 3.8065 -1.1210 -4.0081
12 6 2.0324 -0.7104 1.2305
13 8 2.7270 -1.6927 1.1196
14 8 1.7080 -0.2517 2.4496
15 6 2.2267 -0.9863 3.5897
16 6 1.7557 -0.3189 4.8834
17 1 0.6730 -0.1931 4.8732
18 6 2.1907 -1.1541 6.1112
19 6 2.4816 -0.0590 7.1526
20 6 1.8694 -0.1131 8.5464
21 6 3.3732 -0.3313 8.3570
22 6 2.5692 1.2273 6.3723
23 8 2.7467 2.3226 6.8507
24 8 2.4135 0.9688 5.0637
25 1 -0.3633 0.5139 0.8899
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3632 -1.0276 -0.0005
28 1 0.7091 1.1613 -3.4844
29 1 3.3162 -0.9859 3.5569
30 1 1.8626 -2.0131 3.5566
31 1 3.0889 -1.7313 5.8915
32 1 1.3830 -1.8051 6.4456
33 1 1.5493 0.8284 8.9927
34 1 1.2618 -0.9830 8.7962
35 1 3.7548 -1.3446 8.4823
36 1 4.0423 0.4667 8.6788
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118406948.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:38:28
Heat of formation + Delta-G solvation = -166.329382 kcal
Electronic energy + Delta-G solvation = -20179.106793 eV
Core-core repulsion = 16821.638774 eV
Total energy + Delta-G solvation = -3357.468020 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 268.119 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-42.35689 -41.30282 -38.87658 -37.77637 -37.42405 -35.92680 -33.17604 -32.45834
-28.91078 -27.28328 -25.69982 -24.52143 -23.56371 -22.98620 -21.68056 -20.99838
-18.77551 -18.23812 -18.07149 -17.78712 -17.71100 -17.09583 -16.79237 -16.16738
-16.06479 -15.21631 -14.78068 -14.69464 -14.15488 -14.07995 -13.84706 -13.63538
-13.35583 -13.10966 -12.96839 -12.76044 -12.61118 -12.45167 -12.29267 -12.05129
-11.85752 -11.70732 -11.68796 -11.25230 -11.13128 -11.11823 -11.02770 -10.53645
-8.20121 -6.34173 0.77923 1.40831 1.42862 1.45439 1.52616 1.78090
1.98655 2.43144 2.70253 2.80289 3.09994 3.20338 3.31313 3.68256
3.84222 3.91979 3.98310 4.19821 4.29956 4.46422 4.59030 4.68802
4.69079 4.81189 4.86036 4.89997 4.92546 4.99690 5.16218 5.35349
5.44151 5.66551 5.68684 5.88400 6.09696 6.28856 6.72435 7.01424
7.34911 8.86258
Molecular weight = 268.12amu
Principal moments of inertia in cm(-1)
A = 0.045234 B = 0.003555 C = 0.003456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.848004 B = 7874.023144 C = 8099.306649
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.047 3.953
3 H 0.045 0.955
4 C -0.540 4.540
5 H 0.059 0.941
6 C 0.021 3.979
7 N -0.911 5.911
8 Si 0.966 3.034
9 H -0.270 1.270
10 H -0.276 1.276
11 H -0.275 1.275
12 C 0.476 3.524
13 O -0.538 6.538
14 O -0.363 6.363
15 C 0.055 3.945
16 C 0.088 3.912
17 H 0.122 0.878
18 C -0.094 4.094
19 C -0.235 4.235
20 C -0.116 4.116
21 C -0.123 4.123
22 C 0.505 3.495
23 O -0.501 6.501
24 O -0.364 6.364
25 H 0.048 0.952
26 H 0.075 0.925
27 H 0.034 0.966
28 H 0.268 0.732
29 H 0.071 0.929
30 H 0.116 0.884
31 H 0.110 0.890
32 H 0.142 0.858
33 H 0.096 0.904
34 H 0.145 0.855
35 H 0.140 0.860
36 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.637 -6.584 21.669 22.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.028 3.972
3 H 0.063 0.937
4 C -0.578 4.578
5 H 0.078 0.922
6 C -0.179 4.179
7 N -0.549 5.549
8 Si 0.790 3.210
9 H -0.195 1.195
10 H -0.200 1.200
11 H -0.200 1.200
12 C 0.322 3.678
13 O -0.428 6.428
14 O -0.281 6.281
15 C -0.018 4.018
16 C 0.033 3.967
17 H 0.140 0.860
18 C -0.131 4.131
19 C -0.237 4.237
20 C -0.152 4.152
21 C -0.159 4.159
22 C 0.348 3.652
23 O -0.388 6.388
24 O -0.281 6.281
25 H 0.067 0.933
26 H 0.094 0.906
27 H 0.053 0.947
28 H 0.077 0.923
29 H 0.090 0.910
30 H 0.134 0.866
31 H 0.128 0.872
32 H 0.160 0.840
33 H 0.115 0.885
34 H 0.163 0.837
35 H 0.158 0.842
36 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -0.375 -6.123 21.562 22.417
hybrid contribution 0.552 0.079 -1.151 1.279
sum 0.177 -6.044 20.411 21.288
Atomic orbital electron populations
1.21553 0.94149 1.00147 1.01931 1.18696 0.96161 0.95977 0.86405
0.93748 1.21245 1.32751 1.13380 0.90420 0.92248 1.25679 0.94867
0.95637 1.01709 1.69962 1.36671 1.23437 1.24835 0.85496 0.78661
0.78764 0.78064 1.19516 1.20045 1.19996 1.24742 0.76042 0.82474
0.84574 1.90471 1.37279 1.27656 1.87352 1.86608 1.69989 1.56150
1.15314 1.23390 1.00062 0.96412 0.81948 1.23992 0.98719 0.79456
0.94518 0.85984 1.22518 1.05977 0.95620 0.88962 1.22266 1.14793
0.93575 0.93025 1.23161 0.96608 1.05467 0.89990 1.23092 0.94044
1.05213 0.93583 1.22658 0.70913 0.89868 0.81758 1.90646 1.46724
1.29294 1.72099 1.87147 1.72301 1.41302 1.27318 0.93342 0.90585
0.94684 0.92259 0.91017 0.86573 0.87213 0.83966 0.88516 0.83743
0.84154 0.88741
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.65 8.90 71.98 0.64 -5.01 16
2 C 0.05 2.42 2.74 -12.29 -0.03 2.39 16
3 H 0.04 2.46 8.14 -2.38 -0.02 2.44 16
4 C -0.54 -30.77 8.37 25.60 0.21 -30.55 16
5 H 0.06 3.51 6.76 -2.91 -0.02 3.49 16
6 C 0.02 1.16 5.30 84.66 0.45 1.61 16
7 N -0.91 -51.16 11.32 21.45 0.24 -50.92 16
8 Si 0.97 43.83 29.54 68.60 2.03 45.85 16
9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16
11 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16
12 C 0.48 22.21 7.25 71.24 0.52 22.73 16
13 O -0.54 -26.78 15.21 21.99 0.33 -26.44 16
14 O -0.36 -14.01 10.12 -51.05 -0.52 -14.53 16
15 C 0.06 1.51 5.12 71.98 0.37 1.88 16
16 C 0.09 1.85 3.84 31.19 0.12 1.97 16
17 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16
18 C -0.09 -1.07 6.48 31.49 0.20 -0.87 16
19 C -0.23 -3.63 2.44 -53.07 -0.13 -3.76 16
20 C -0.12 -1.11 10.27 30.42 0.31 -0.80 16
21 C -0.12 -1.29 10.28 30.41 0.31 -0.98 16
22 C 0.50 13.89 8.35 71.24 0.59 14.49 16
23 O -0.50 -17.28 18.00 21.59 0.39 -16.89 16
24 O -0.36 -11.04 10.76 -51.96 -0.56 -11.60 16
25 H 0.05 1.98 8.11 -2.39 -0.02 1.97 16
26 H 0.08 3.90 6.07 -2.38 -0.01 3.89 16
27 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16
28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16
29 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16
30 H 0.12 2.59 8.13 -2.39 -0.02 2.57 16
31 H 0.11 1.03 7.93 -2.39 -0.02 1.01 16
32 H 0.14 0.58 8.13 -2.39 -0.02 0.56 16
33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
34 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16
35 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16
36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
Total: -1.00 -73.51 314.19 6.57 -66.95
By element:
Atomic # 1 Polarization: 3.40 SS G_CDS: 1.08 Total: 4.49 kcal
Atomic # 6 Polarization: -0.48 SS G_CDS: 3.57 Total: 3.09 kcal
Atomic # 7 Polarization: -51.16 SS G_CDS: 0.24 Total: -50.92 kcal
Atomic # 8 Polarization: -69.10 SS G_CDS: -0.35 Total: -69.46 kcal
Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal
Total: -73.51 6.57 -66.95 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118406948.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.384 kcal
(2) G-P(sol) polarization free energy of solvation -73.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -166.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds