Wall clock time and date at job start Mon Mar 30 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47073 * 2 1 4 4 C 1.50699 * 109.47416 * 239.99812 * 2 1 3 5 5 H 1.07997 * 120.00414 * 240.00335 * 4 2 1 6 6 C 1.37882 * 119.99747 * 60.00049 * 4 2 1 7 7 N 1.31512 * 120.00287 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99778 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47288 * 59.99916 * 8 6 4 10 10 H 1.48500 * 109.47117 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47334 * 299.99878 * 8 6 4 12 12 C 1.50703 * 109.47145 * 120.00051 * 2 1 3 13 13 O 1.20818 * 120.00153 * 120.00161 * 12 2 1 14 14 O 1.34238 * 119.99497 * 300.00107 * 12 2 1 15 15 C 1.45203 * 116.99529 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.46719 * 179.97438 * 15 14 12 17 17 H 1.08996 * 110.37952 * 52.61353 * 16 15 14 18 18 C 1.54732 * 110.42200 * 175.00157 * 16 15 14 19 19 C 1.53892 * 101.88769 * 145.14257 * 18 16 15 20 20 C 1.52334 * 121.19488 * 128.88833 * 19 18 16 21 21 C 1.52314 * 121.23410 * 200.88355 * 19 18 16 22 22 C 1.50701 * 105.54517 * 344.94468 * 19 18 16 23 23 O 1.20833 * 125.25749 * 177.60839 * 22 19 18 24 24 O 1.34298 * 109.48146 * 357.87748 * 22 19 18 25 25 H 1.08997 * 109.47151 * 300.00385 * 1 2 3 26 26 H 1.09004 * 109.46640 * 60.00479 * 1 2 3 27 27 H 1.08993 * 109.46738 * 179.97438 * 1 2 3 28 28 H 0.96992 * 120.00244 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46723 * 60.00383 * 15 14 12 30 30 H 1.08999 * 109.47372 * 300.00519 * 15 14 12 31 31 H 1.08997 * 110.95065 * 26.99155 * 18 16 15 32 32 H 1.08998 * 110.94571 * 263.28740 * 18 16 15 33 33 H 1.08996 * 117.51333 * 218.10655 * 20 19 18 34 34 H 1.08998 * 117.51585 * 3.22385 * 20 19 18 35 35 H 1.08996 * 117.51713 * 356.84410 * 21 19 18 36 36 H 1.08999 * 117.51028 * 141.95850 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6035 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0077 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1210 -4.0081 12 6 2.0324 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7080 -0.2517 2.4496 15 6 2.2267 -0.9863 3.5897 16 6 1.7557 -0.3189 4.8834 17 1 0.6730 -0.1931 4.8732 18 6 2.1907 -1.1541 6.1112 19 6 2.4816 -0.0590 7.1526 20 6 1.8694 -0.1131 8.5464 21 6 3.3732 -0.3313 8.3570 22 6 2.5692 1.2273 6.3723 23 8 2.7467 2.3226 6.8507 24 8 2.4135 0.9688 5.0637 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0276 -0.0005 28 1 0.7091 1.1613 -3.4844 29 1 3.3162 -0.9859 3.5569 30 1 1.8626 -2.0131 3.5566 31 1 3.0889 -1.7313 5.8915 32 1 1.3830 -1.8051 6.4456 33 1 1.5493 0.8284 8.9927 34 1 1.2618 -0.9830 8.7962 35 1 3.7548 -1.3446 8.4823 36 1 4.0423 0.4667 8.6788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118406948.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:28 Heat of formation + Delta-G solvation = -166.329382 kcal Electronic energy + Delta-G solvation = -20179.106793 eV Core-core repulsion = 16821.638774 eV Total energy + Delta-G solvation = -3357.468020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.35689 -41.30282 -38.87658 -37.77637 -37.42405 -35.92680 -33.17604 -32.45834 -28.91078 -27.28328 -25.69982 -24.52143 -23.56371 -22.98620 -21.68056 -20.99838 -18.77551 -18.23812 -18.07149 -17.78712 -17.71100 -17.09583 -16.79237 -16.16738 -16.06479 -15.21631 -14.78068 -14.69464 -14.15488 -14.07995 -13.84706 -13.63538 -13.35583 -13.10966 -12.96839 -12.76044 -12.61118 -12.45167 -12.29267 -12.05129 -11.85752 -11.70732 -11.68796 -11.25230 -11.13128 -11.11823 -11.02770 -10.53645 -8.20121 -6.34173 0.77923 1.40831 1.42862 1.45439 1.52616 1.78090 1.98655 2.43144 2.70253 2.80289 3.09994 3.20338 3.31313 3.68256 3.84222 3.91979 3.98310 4.19821 4.29956 4.46422 4.59030 4.68802 4.69079 4.81189 4.86036 4.89997 4.92546 4.99690 5.16218 5.35349 5.44151 5.66551 5.68684 5.88400 6.09696 6.28856 6.72435 7.01424 7.34911 8.86258 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.045234 B = 0.003555 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.848004 B = 7874.023144 C = 8099.306649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.047 3.953 3 H 0.045 0.955 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.476 3.524 13 O -0.538 6.538 14 O -0.363 6.363 15 C 0.055 3.945 16 C 0.088 3.912 17 H 0.122 0.878 18 C -0.094 4.094 19 C -0.235 4.235 20 C -0.116 4.116 21 C -0.123 4.123 22 C 0.505 3.495 23 O -0.501 6.501 24 O -0.364 6.364 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.268 0.732 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 -6.584 21.669 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.028 3.972 3 H 0.063 0.937 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.790 3.210 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.322 3.678 13 O -0.428 6.428 14 O -0.281 6.281 15 C -0.018 4.018 16 C 0.033 3.967 17 H 0.140 0.860 18 C -0.131 4.131 19 C -0.237 4.237 20 C -0.152 4.152 21 C -0.159 4.159 22 C 0.348 3.652 23 O -0.388 6.388 24 O -0.281 6.281 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.160 0.840 33 H 0.115 0.885 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.375 -6.123 21.562 22.417 hybrid contribution 0.552 0.079 -1.151 1.279 sum 0.177 -6.044 20.411 21.288 Atomic orbital electron populations 1.21553 0.94149 1.00147 1.01931 1.18696 0.96161 0.95977 0.86405 0.93748 1.21245 1.32751 1.13380 0.90420 0.92248 1.25679 0.94867 0.95637 1.01709 1.69962 1.36671 1.23437 1.24835 0.85496 0.78661 0.78764 0.78064 1.19516 1.20045 1.19996 1.24742 0.76042 0.82474 0.84574 1.90471 1.37279 1.27656 1.87352 1.86608 1.69989 1.56150 1.15314 1.23390 1.00062 0.96412 0.81948 1.23992 0.98719 0.79456 0.94518 0.85984 1.22518 1.05977 0.95620 0.88962 1.22266 1.14793 0.93575 0.93025 1.23161 0.96608 1.05467 0.89990 1.23092 0.94044 1.05213 0.93583 1.22658 0.70913 0.89868 0.81758 1.90646 1.46724 1.29294 1.72099 1.87147 1.72301 1.41302 1.27318 0.93342 0.90585 0.94684 0.92259 0.91017 0.86573 0.87213 0.83966 0.88516 0.83743 0.84154 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.90 71.98 0.64 -5.01 16 2 C 0.05 2.42 2.74 -12.29 -0.03 2.39 16 3 H 0.04 2.46 8.14 -2.38 -0.02 2.44 16 4 C -0.54 -30.77 8.37 25.60 0.21 -30.55 16 5 H 0.06 3.51 6.76 -2.91 -0.02 3.49 16 6 C 0.02 1.16 5.30 84.66 0.45 1.61 16 7 N -0.91 -51.16 11.32 21.45 0.24 -50.92 16 8 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 12 C 0.48 22.21 7.25 71.24 0.52 22.73 16 13 O -0.54 -26.78 15.21 21.99 0.33 -26.44 16 14 O -0.36 -14.01 10.12 -51.05 -0.52 -14.53 16 15 C 0.06 1.51 5.12 71.98 0.37 1.88 16 16 C 0.09 1.85 3.84 31.19 0.12 1.97 16 17 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.09 -1.07 6.48 31.49 0.20 -0.87 16 19 C -0.23 -3.63 2.44 -53.07 -0.13 -3.76 16 20 C -0.12 -1.11 10.27 30.42 0.31 -0.80 16 21 C -0.12 -1.29 10.28 30.41 0.31 -0.98 16 22 C 0.50 13.89 8.35 71.24 0.59 14.49 16 23 O -0.50 -17.28 18.00 21.59 0.39 -16.89 16 24 O -0.36 -11.04 10.76 -51.96 -0.56 -11.60 16 25 H 0.05 1.98 8.11 -2.39 -0.02 1.97 16 26 H 0.08 3.90 6.07 -2.38 -0.01 3.89 16 27 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 30 H 0.12 2.59 8.13 -2.39 -0.02 2.57 16 31 H 0.11 1.03 7.93 -2.39 -0.02 1.01 16 32 H 0.14 0.58 8.13 -2.39 -0.02 0.56 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -73.51 314.19 6.57 -66.95 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.08 Total: 4.49 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 3.57 Total: 3.09 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.24 Total: -50.92 kcal Atomic # 8 Polarization: -69.10 SS G_CDS: -0.35 Total: -69.46 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.51 6.57 -66.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118406948.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.384 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds