Wall clock time and date at job start Mon Mar 30 2020 04:50:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30645 * 1
3 3 Si 1.86794 * 119.99938 * 2 1
4 4 H 1.48500 * 109.47423 * 359.97438 * 3 2 1
5 5 H 1.48500 * 109.47273 * 120.00340 * 3 2 1
6 6 H 1.48502 * 109.47039 * 240.00156 * 3 2 1
7 7 C 1.40306 * 119.99696 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99522 * 159.52204 * 7 2 1
9 9 C 1.40540 * 120.00428 * 339.52682 * 7 2 1
10 10 C 1.44190 * 123.71046 * 335.41324 * 9 7 2
11 11 C 1.32767 * 114.42694 * 179.79947 * 10 9 7
12 12 S 1.75471 * 111.36085 * 0.46222 * 11 10 9
13 13 C 1.39539 * 123.71469 * 155.71312 * 9 7 2
14 14 C 1.46234 * 125.23118 * 0.02562 * 13 9 7
15 15 O 1.21762 * 120.00067 * 359.97438 * 14 13 9
16 16 N 1.34777 * 120.00045 * 179.97438 * 14 13 9
17 17 C 1.46502 * 120.00062 * 179.97438 * 16 14 13
18 18 C 1.52998 * 109.47000 * 179.97438 * 17 16 14
19 19 C 1.53002 * 109.46917 * 179.97438 * 18 17 16
20 20 C 1.53005 * 109.47203 * 180.02562 * 19 18 17
21 21 N 1.46902 * 109.47090 * 180.02562 * 20 19 18
22 22 H 0.96997 * 119.99920 * 174.00076 * 1 2 3
23 23 H 1.07997 * 122.78554 * 0.03152 * 10 9 7
24 24 H 1.08002 * 124.31411 * 180.19423 * 11 10 9
25 25 H 0.96998 * 119.99831 * 359.97438 * 16 14 13
26 26 H 1.09004 * 109.47182 * 299.99641 * 17 16 14
27 27 H 1.09000 * 109.47125 * 59.99751 * 17 16 14
28 28 H 1.08993 * 109.47626 * 300.00016 * 18 17 16
29 29 H 1.09000 * 109.47466 * 60.00489 * 18 17 16
30 30 H 1.08996 * 109.47639 * 300.00317 * 19 18 17
31 31 H 1.09000 * 109.46980 * 60.00224 * 19 18 17
32 32 H 1.09004 * 109.46938 * 300.00291 * 20 19 18
33 33 H 1.08994 * 109.46691 * 60.00494 * 20 19 18
34 34 H 1.00902 * 111.00094 * 56.04544 * 21 20 19
35 35 H 1.00897 * 110.99932 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2404 1.6177 0.0000
4 1 1.2755 2.7465 -0.0006
5 1 3.0942 1.6964 1.2124
6 1 3.0941 1.6964 -1.2125
7 6 2.0079 -1.2151 0.0005
8 1 3.0368 -1.2448 -0.3267
9 6 1.3718 -2.3936 0.4268
10 6 0.2460 -2.4146 1.3275
11 6 -0.2133 -3.6292 1.6040
12 16 0.7183 -4.8675 0.7809
13 6 1.7640 -3.6725 0.0296
14 6 2.8753 -3.9721 -0.8724
15 8 3.5409 -3.0662 -1.3402
16 7 3.1629 -5.2510 -1.1859
17 6 4.2759 -5.5511 -2.0900
18 6 4.3864 -7.0655 -2.2776
19 6 5.5484 -7.3789 -3.2223
20 6 5.6585 -8.8933 -3.4105
21 7 6.7746 -9.1942 -4.3171
22 1 -0.4850 -0.8354 -0.0878
23 1 -0.1898 -1.5166 1.7398
24 1 -1.0506 -3.8295 2.2561
25 1 2.6329 -5.9727 -0.8128
26 1 4.0979 -5.0771 -3.0552
27 1 5.2035 -5.1695 -1.6634
28 1 4.5646 -7.5392 -1.3123
29 1 3.4588 -7.4475 -2.7041
30 1 5.3698 -6.9052 -4.1876
31 1 6.4761 -6.9969 -2.7963
32 1 5.8370 -9.3673 -2.4453
33 1 4.7308 -9.2748 -3.8368
34 1 7.6358 -8.7946 -3.9754
35 1 6.8680 -10.1889 -4.4580
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118992751.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:50:27
Heat of formation + Delta-G solvation = -42.762753 kcal
Electronic energy + Delta-G solvation = -17501.363515 eV
Core-core repulsion = 14624.299368 eV
Total energy + Delta-G solvation = -2877.064146 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-38.42986 -36.74575 -36.16205 -34.11775 -33.02008 -31.55774 -29.06658 -27.21145
-25.39685 -22.88933 -22.02403 -21.27598 -19.99750 -19.03874 -17.67314 -16.38101
-16.23583 -15.60847 -14.95853 -14.78003 -14.43236 -14.13973 -13.96166 -13.74229
-13.17351 -12.91849 -12.28973 -12.13629 -11.92109 -11.72697 -11.57478 -11.34689
-11.06025 -11.03218 -10.69600 -10.67378 -10.43493 -10.08767 -9.74447 -9.15441
-8.99192 -8.49951 -8.24463 -7.77071 -7.35664 -7.31505 -4.58696 2.02972
2.93493 3.06492 3.11580 3.33148 3.54397 3.68220 3.91920 4.00412
4.40892 4.42583 4.78283 4.87678 5.10481 5.23049 5.27540 5.43620
5.59108 5.74120 5.82492 5.88573 6.03449 6.24321 6.29192 6.44415
6.78262 6.82717 6.97437 7.12404 7.19534 7.28147 7.35347 7.77482
7.94459 8.42452 8.51015 8.75820 9.57471 9.77519
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.022896 B = 0.004347 C = 0.003708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1222.654166 B = 6440.217597 C = 7550.159332
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.778 5.778
2 C 0.029 3.971
3 Si 1.074 2.926
4 H -0.272 1.272
5 H -0.271 1.271
6 H -0.269 1.269
7 C -0.426 4.426
8 H 0.110 0.890
9 C 0.112 3.888
10 C -0.142 4.142
11 C -0.187 4.187
12 S -0.037 6.037
13 C -0.438 4.438
14 C 0.598 3.402
15 O -0.565 6.565
16 N -0.753 5.753
17 C 0.130 3.870
18 C -0.129 4.129
19 C -0.115 4.115
20 C 0.061 3.939
21 N -0.854 5.854
22 H 0.300 0.700
23 H 0.131 0.869
24 H 0.141 0.859
25 H 0.388 0.612
26 H 0.058 0.942
27 H 0.056 0.944
28 H 0.065 0.935
29 H 0.067 0.933
30 H 0.073 0.927
31 H 0.062 0.938
32 H 0.026 0.974
33 H 0.072 0.928
34 H 0.340 0.660
35 H 0.340 0.660
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.307 -10.905 -1.445 12.213
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.401 5.401
2 C -0.195 4.195
3 Si 0.896 3.104
4 H -0.197 1.197
5 H -0.196 1.196
6 H -0.194 1.194
7 C -0.456 4.456
8 H 0.127 0.873
9 C 0.102 3.898
10 C -0.175 4.175
11 C -0.321 4.321
12 S 0.218 5.782
13 C -0.556 4.556
14 C 0.395 3.605
15 O -0.448 6.448
16 N -0.406 5.406
17 C 0.005 3.995
18 C -0.167 4.167
19 C -0.153 4.153
20 C -0.070 4.070
21 N -0.383 5.383
22 H 0.115 0.885
23 H 0.149 0.851
24 H 0.159 0.841
25 H 0.221 0.779
26 H 0.076 0.924
27 H 0.075 0.925
28 H 0.084 0.916
29 H 0.086 0.914
30 H 0.092 0.908
31 H 0.081 0.919
32 H 0.044 0.956
33 H 0.090 0.910
34 H 0.152 0.848
35 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 5.030 -9.770 -2.311 11.229
hybrid contribution 0.145 -1.262 1.121 1.694
sum 5.175 -11.032 -1.190 12.243
Atomic orbital electron populations
1.70440 1.08383 1.34506 1.26793 1.27561 0.95667 1.05261 0.91032
0.83498 0.75555 0.72651 0.78691 1.19655 1.19610 1.19403 1.20986
1.02063 0.91300 1.31250 0.87256 1.17901 0.89522 0.92402 0.90017
1.21596 0.98673 0.96928 1.00337 1.24939 1.04499 0.96628 1.06052
1.82719 1.30897 1.12721 1.51832 1.22452 1.14367 0.94443 1.24375
1.16801 0.82807 0.81076 0.79780 1.90656 1.52758 1.45187 1.56185
1.45828 1.35003 1.08227 1.51558 1.21050 0.90448 0.93792 0.94203
1.21737 0.98986 0.96127 0.99860 1.21479 0.98454 0.95117 1.00289
1.21818 0.94831 0.96398 0.93953 1.58702 1.08337 1.18355 1.52930
0.88546 0.85126 0.84117 0.77880 0.92371 0.92529 0.91648 0.91393
0.90781 0.91881 0.95587 0.90987 0.84751 0.84808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -19.77 12.49 55.57 0.69 -19.08 16
2 C 0.03 0.72 5.24 -17.28 -0.09 0.63 16
3 Si 1.07 21.49 29.98 -169.99 -5.10 16.39 16
4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16
5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16
6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16
7 C -0.43 -11.64 8.44 -37.94 -0.32 -11.96 16
8 H 0.11 3.17 6.13 -52.48 -0.32 2.84 16
9 C 0.11 2.99 5.40 -106.21 -0.57 2.42 16
10 C -0.14 -3.38 8.19 -39.12 -0.32 -3.70 16
11 C -0.19 -3.94 11.07 28.86 0.32 -3.62 16
12 S -0.04 -0.79 22.25 -107.50 -2.39 -3.18 16
13 C -0.44 -11.19 6.51 -35.89 -0.23 -11.42 16
14 C 0.60 15.05 7.76 -13.05 -0.10 14.95 16
15 O -0.56 -15.92 14.46 5.13 0.07 -15.85 16
16 N -0.75 -14.91 5.55 -61.75 -0.34 -15.26 16
17 C 0.13 2.14 5.67 -4.04 -0.02 2.11 16
18 C -0.13 -1.54 5.33 -26.73 -0.14 -1.68 16
19 C -0.11 -1.20 5.47 -26.73 -0.15 -1.35 16
20 C 0.06 0.55 6.79 -3.82 -0.03 0.52 16
21 N -0.85 -7.14 9.62 -10.37 -0.10 -7.24 16
22 H 0.30 7.75 6.23 -40.82 -0.25 7.49 16
23 H 0.13 3.05 6.79 -52.49 -0.36 2.69 16
24 H 0.14 2.47 8.06 -52.49 -0.42 2.04 16
25 H 0.39 6.95 7.55 -40.82 -0.31 6.64 16
26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16
33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
34 H 0.34 2.48 8.99 -39.29 -0.35 2.13 16
35 H 0.34 2.22 9.08 -39.29 -0.36 1.86 16
LS Contribution 309.51 15.07 4.66 4.66
Total: -1.00 -30.27 309.51 -8.71 -38.98
By element:
Atomic # 1 Polarization: 18.22 SS G_CDS: -4.55 Total: 13.67 kcal
Atomic # 6 Polarization: -11.44 SS G_CDS: -1.66 Total: -13.10 kcal
Atomic # 7 Polarization: -41.82 SS G_CDS: 0.25 Total: -41.57 kcal
Atomic # 8 Polarization: -15.92 SS G_CDS: 0.07 Total: -15.85 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.10 Total: 16.39 kcal
Atomic # 16 Polarization: -0.79 SS G_CDS: -2.39 Total: -3.18 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -30.27 -8.71 -38.98 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118992751.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.781 kcal
(2) G-P(sol) polarization free energy of solvation -30.273 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.055 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds