Wall clock time and date at job start Mon Mar 30 2020 04:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86794 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47423 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47273 * 120.00340 * 3 2 1 6 6 H 1.48502 * 109.47039 * 240.00156 * 3 2 1 7 7 C 1.40306 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99522 * 159.52204 * 7 2 1 9 9 C 1.40540 * 120.00428 * 339.52682 * 7 2 1 10 10 C 1.44190 * 123.71046 * 335.41324 * 9 7 2 11 11 C 1.32767 * 114.42694 * 179.79947 * 10 9 7 12 12 S 1.75471 * 111.36085 * 0.46222 * 11 10 9 13 13 C 1.39539 * 123.71469 * 155.71312 * 9 7 2 14 14 C 1.46234 * 125.23118 * 0.02562 * 13 9 7 15 15 O 1.21762 * 120.00067 * 359.97438 * 14 13 9 16 16 N 1.34777 * 120.00045 * 179.97438 * 14 13 9 17 17 C 1.46502 * 120.00062 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47000 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.46917 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47203 * 180.02562 * 19 18 17 21 21 N 1.46902 * 109.47090 * 180.02562 * 20 19 18 22 22 H 0.96997 * 119.99920 * 174.00076 * 1 2 3 23 23 H 1.07997 * 122.78554 * 0.03152 * 10 9 7 24 24 H 1.08002 * 124.31411 * 180.19423 * 11 10 9 25 25 H 0.96998 * 119.99831 * 359.97438 * 16 14 13 26 26 H 1.09004 * 109.47182 * 299.99641 * 17 16 14 27 27 H 1.09000 * 109.47125 * 59.99751 * 17 16 14 28 28 H 1.08993 * 109.47626 * 300.00016 * 18 17 16 29 29 H 1.09000 * 109.47466 * 60.00489 * 18 17 16 30 30 H 1.08996 * 109.47639 * 300.00317 * 19 18 17 31 31 H 1.09000 * 109.46980 * 60.00224 * 19 18 17 32 32 H 1.09004 * 109.46938 * 300.00291 * 20 19 18 33 33 H 1.08994 * 109.46691 * 60.00494 * 20 19 18 34 34 H 1.00902 * 111.00094 * 56.04544 * 21 20 19 35 35 H 1.00897 * 110.99932 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2755 2.7465 -0.0006 5 1 3.0942 1.6964 1.2124 6 1 3.0941 1.6964 -1.2125 7 6 2.0079 -1.2151 0.0005 8 1 3.0368 -1.2448 -0.3267 9 6 1.3718 -2.3936 0.4268 10 6 0.2460 -2.4146 1.3275 11 6 -0.2133 -3.6292 1.6040 12 16 0.7183 -4.8675 0.7809 13 6 1.7640 -3.6725 0.0296 14 6 2.8753 -3.9721 -0.8724 15 8 3.5409 -3.0662 -1.3402 16 7 3.1629 -5.2510 -1.1859 17 6 4.2759 -5.5511 -2.0900 18 6 4.3864 -7.0655 -2.2776 19 6 5.5484 -7.3789 -3.2223 20 6 5.6585 -8.8933 -3.4105 21 7 6.7746 -9.1942 -4.3171 22 1 -0.4850 -0.8354 -0.0878 23 1 -0.1898 -1.5166 1.7398 24 1 -1.0506 -3.8295 2.2561 25 1 2.6329 -5.9727 -0.8128 26 1 4.0979 -5.0771 -3.0552 27 1 5.2035 -5.1695 -1.6634 28 1 4.5646 -7.5392 -1.3123 29 1 3.4588 -7.4475 -2.7041 30 1 5.3698 -6.9052 -4.1876 31 1 6.4761 -6.9969 -2.7963 32 1 5.8370 -9.3673 -2.4453 33 1 4.7308 -9.2748 -3.8368 34 1 7.6358 -8.7946 -3.9754 35 1 6.8680 -10.1889 -4.4580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118992751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:27 Heat of formation + Delta-G solvation = -42.762753 kcal Electronic energy + Delta-G solvation = -17501.363515 eV Core-core repulsion = 14624.299368 eV Total energy + Delta-G solvation = -2877.064146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.42986 -36.74575 -36.16205 -34.11775 -33.02008 -31.55774 -29.06658 -27.21145 -25.39685 -22.88933 -22.02403 -21.27598 -19.99750 -19.03874 -17.67314 -16.38101 -16.23583 -15.60847 -14.95853 -14.78003 -14.43236 -14.13973 -13.96166 -13.74229 -13.17351 -12.91849 -12.28973 -12.13629 -11.92109 -11.72697 -11.57478 -11.34689 -11.06025 -11.03218 -10.69600 -10.67378 -10.43493 -10.08767 -9.74447 -9.15441 -8.99192 -8.49951 -8.24463 -7.77071 -7.35664 -7.31505 -4.58696 2.02972 2.93493 3.06492 3.11580 3.33148 3.54397 3.68220 3.91920 4.00412 4.40892 4.42583 4.78283 4.87678 5.10481 5.23049 5.27540 5.43620 5.59108 5.74120 5.82492 5.88573 6.03449 6.24321 6.29192 6.44415 6.78262 6.82717 6.97437 7.12404 7.19534 7.28147 7.35347 7.77482 7.94459 8.42452 8.51015 8.75820 9.57471 9.77519 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022896 B = 0.004347 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.654166 B = 6440.217597 C = 7550.159332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.426 4.426 8 H 0.110 0.890 9 C 0.112 3.888 10 C -0.142 4.142 11 C -0.187 4.187 12 S -0.037 6.037 13 C -0.438 4.438 14 C 0.598 3.402 15 O -0.565 6.565 16 N -0.753 5.753 17 C 0.130 3.870 18 C -0.129 4.129 19 C -0.115 4.115 20 C 0.061 3.939 21 N -0.854 5.854 22 H 0.300 0.700 23 H 0.131 0.869 24 H 0.141 0.859 25 H 0.388 0.612 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.340 0.660 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -10.905 -1.445 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.195 4.195 3 Si 0.896 3.104 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.456 4.456 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.175 4.175 11 C -0.321 4.321 12 S 0.218 5.782 13 C -0.556 4.556 14 C 0.395 3.605 15 O -0.448 6.448 16 N -0.406 5.406 17 C 0.005 3.995 18 C -0.167 4.167 19 C -0.153 4.153 20 C -0.070 4.070 21 N -0.383 5.383 22 H 0.115 0.885 23 H 0.149 0.851 24 H 0.159 0.841 25 H 0.221 0.779 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.152 0.848 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.030 -9.770 -2.311 11.229 hybrid contribution 0.145 -1.262 1.121 1.694 sum 5.175 -11.032 -1.190 12.243 Atomic orbital electron populations 1.70440 1.08383 1.34506 1.26793 1.27561 0.95667 1.05261 0.91032 0.83498 0.75555 0.72651 0.78691 1.19655 1.19610 1.19403 1.20986 1.02063 0.91300 1.31250 0.87256 1.17901 0.89522 0.92402 0.90017 1.21596 0.98673 0.96928 1.00337 1.24939 1.04499 0.96628 1.06052 1.82719 1.30897 1.12721 1.51832 1.22452 1.14367 0.94443 1.24375 1.16801 0.82807 0.81076 0.79780 1.90656 1.52758 1.45187 1.56185 1.45828 1.35003 1.08227 1.51558 1.21050 0.90448 0.93792 0.94203 1.21737 0.98986 0.96127 0.99860 1.21479 0.98454 0.95117 1.00289 1.21818 0.94831 0.96398 0.93953 1.58702 1.08337 1.18355 1.52930 0.88546 0.85126 0.84117 0.77880 0.92371 0.92529 0.91648 0.91393 0.90781 0.91881 0.95587 0.90987 0.84751 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.77 12.49 55.57 0.69 -19.08 16 2 C 0.03 0.72 5.24 -17.28 -0.09 0.63 16 3 Si 1.07 21.49 29.98 -169.99 -5.10 16.39 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.43 -11.64 8.44 -37.94 -0.32 -11.96 16 8 H 0.11 3.17 6.13 -52.48 -0.32 2.84 16 9 C 0.11 2.99 5.40 -106.21 -0.57 2.42 16 10 C -0.14 -3.38 8.19 -39.12 -0.32 -3.70 16 11 C -0.19 -3.94 11.07 28.86 0.32 -3.62 16 12 S -0.04 -0.79 22.25 -107.50 -2.39 -3.18 16 13 C -0.44 -11.19 6.51 -35.89 -0.23 -11.42 16 14 C 0.60 15.05 7.76 -13.05 -0.10 14.95 16 15 O -0.56 -15.92 14.46 5.13 0.07 -15.85 16 16 N -0.75 -14.91 5.55 -61.75 -0.34 -15.26 16 17 C 0.13 2.14 5.67 -4.04 -0.02 2.11 16 18 C -0.13 -1.54 5.33 -26.73 -0.14 -1.68 16 19 C -0.11 -1.20 5.47 -26.73 -0.15 -1.35 16 20 C 0.06 0.55 6.79 -3.82 -0.03 0.52 16 21 N -0.85 -7.14 9.62 -10.37 -0.10 -7.24 16 22 H 0.30 7.75 6.23 -40.82 -0.25 7.49 16 23 H 0.13 3.05 6.79 -52.49 -0.36 2.69 16 24 H 0.14 2.47 8.06 -52.49 -0.42 2.04 16 25 H 0.39 6.95 7.55 -40.82 -0.31 6.64 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.34 2.48 8.99 -39.29 -0.35 2.13 16 35 H 0.34 2.22 9.08 -39.29 -0.36 1.86 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -30.27 309.51 -8.71 -38.98 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.55 Total: 13.67 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.66 Total: -13.10 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.25 Total: -41.57 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.07 Total: -15.85 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.10 Total: 16.39 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.39 Total: -3.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.27 -8.71 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118992751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.781 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds