Wall clock time and date at job start Mon Mar 30 2020 04:50:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30645 * 1
3 3 Si 1.86794 * 119.99938 * 2 1
4 4 H 1.48500 * 109.47423 * 359.97438 * 3 2 1
5 5 H 1.48500 * 109.47273 * 120.00340 * 3 2 1
6 6 H 1.48502 * 109.47039 * 240.00156 * 3 2 1
7 7 C 1.40306 * 119.99696 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99522 * 159.52204 * 7 2 1
9 9 C 1.40540 * 120.00428 * 339.52682 * 7 2 1
10 10 C 1.44190 * 123.71046 * 335.41324 * 9 7 2
11 11 C 1.32767 * 114.42694 * 179.79947 * 10 9 7
12 12 S 1.75471 * 111.36085 * 0.46222 * 11 10 9
13 13 C 1.39539 * 123.71469 * 155.71312 * 9 7 2
14 14 C 1.46234 * 125.23118 * 0.02562 * 13 9 7
15 15 O 1.21762 * 120.00067 * 359.97438 * 14 13 9
16 16 N 1.34777 * 120.00045 * 179.97438 * 14 13 9
17 17 C 1.46502 * 120.00062 * 179.97438 * 16 14 13
18 18 C 1.52998 * 109.47000 * 179.97438 * 17 16 14
19 19 C 1.53002 * 109.46917 * 179.97438 * 18 17 16
20 20 C 1.53005 * 109.47203 * 180.02562 * 19 18 17
21 21 N 1.46902 * 109.47090 * 180.02562 * 20 19 18
22 22 H 0.96997 * 119.99920 * 174.00076 * 1 2 3
23 23 H 1.07997 * 122.78554 * 0.03152 * 10 9 7
24 24 H 1.08002 * 124.31411 * 180.19423 * 11 10 9
25 25 H 0.96998 * 119.99831 * 359.97438 * 16 14 13
26 26 H 1.09004 * 109.47182 * 299.99641 * 17 16 14
27 27 H 1.09000 * 109.47125 * 59.99751 * 17 16 14
28 28 H 1.08993 * 109.47626 * 300.00016 * 18 17 16
29 29 H 1.09000 * 109.47466 * 60.00489 * 18 17 16
30 30 H 1.08996 * 109.47639 * 300.00317 * 19 18 17
31 31 H 1.09000 * 109.46980 * 60.00224 * 19 18 17
32 32 H 1.09004 * 109.46938 * 300.00291 * 20 19 18
33 33 H 1.08994 * 109.46691 * 60.00494 * 20 19 18
34 34 H 1.00902 * 111.00094 * 56.04544 * 21 20 19
35 35 H 1.00897 * 110.99932 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2404 1.6177 0.0000
4 1 1.2755 2.7465 -0.0006
5 1 3.0942 1.6964 1.2124
6 1 3.0941 1.6964 -1.2125
7 6 2.0079 -1.2151 0.0005
8 1 3.0368 -1.2448 -0.3267
9 6 1.3718 -2.3936 0.4268
10 6 0.2460 -2.4146 1.3275
11 6 -0.2133 -3.6292 1.6040
12 16 0.7183 -4.8675 0.7809
13 6 1.7640 -3.6725 0.0296
14 6 2.8753 -3.9721 -0.8724
15 8 3.5409 -3.0662 -1.3402
16 7 3.1629 -5.2510 -1.1859
17 6 4.2759 -5.5511 -2.0900
18 6 4.3864 -7.0655 -2.2776
19 6 5.5484 -7.3789 -3.2223
20 6 5.6585 -8.8933 -3.4105
21 7 6.7746 -9.1942 -4.3171
22 1 -0.4850 -0.8354 -0.0878
23 1 -0.1898 -1.5166 1.7398
24 1 -1.0506 -3.8295 2.2561
25 1 2.6329 -5.9727 -0.8128
26 1 4.0979 -5.0771 -3.0552
27 1 5.2035 -5.1695 -1.6634
28 1 4.5646 -7.5392 -1.3123
29 1 3.4588 -7.4475 -2.7041
30 1 5.3698 -6.9052 -4.1876
31 1 6.4761 -6.9969 -2.7963
32 1 5.8370 -9.3673 -2.4453
33 1 4.7308 -9.2748 -3.8368
34 1 7.6358 -8.7946 -3.9754
35 1 6.8680 -10.1889 -4.4580
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118992751.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:50:27
Heat of formation + Delta-G solvation = -64.637396 kcal
Electronic energy + Delta-G solvation = -17502.312070 eV
Core-core repulsion = 14624.299368 eV
Total energy + Delta-G solvation = -2878.012702 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.28148 -38.38559 -37.38947 -35.50906 -34.89149 -32.79727 -30.87681 -28.63812
-27.01943 -24.48421 -23.35877 -22.31949 -21.71683 -20.90090 -19.46855 -18.18286
-17.14179 -16.77105 -16.43747 -16.29062 -15.77217 -15.73450 -15.51101 -15.17519
-14.89717 -14.35386 -14.03767 -13.75174 -13.34386 -13.20960 -12.79536 -12.67737
-12.63562 -12.47025 -12.03914 -12.02173 -11.88417 -11.65560 -11.52828 -10.99596
-10.48328 -10.01602 -9.67691 -9.62439 -9.24713 -9.14131 -6.56082 0.16884
1.19085 1.38293 1.46596 1.64127 1.79171 1.88589 2.25050 2.48431
2.50469 3.13889 3.59501 3.86797 3.95162 4.18536 4.28850 4.36817
4.42614 4.59834 4.67671 4.73871 4.85938 4.87272 5.03938 5.17244
5.25844 5.31243 5.33126 5.36777 5.66684 5.85621 5.92082 6.21930
6.47715 6.58817 6.61427 6.89961 7.66287 7.81765
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.022896 B = 0.004347 C = 0.003708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1222.654166 B = 6440.217597 C = 7550.159332
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.787 5.787
2 C 0.002 3.998
3 Si 1.119 2.881
4 H -0.257 1.257
5 H -0.258 1.258
6 H -0.269 1.269
7 C -0.468 4.468
8 H 0.080 0.920
9 C 0.089 3.911
10 C -0.173 4.173
11 C -0.168 4.168
12 S 0.033 5.967
13 C -0.474 4.474
14 C 0.586 3.414
15 O -0.606 6.606
16 N -0.737 5.737
17 C 0.127 3.873
18 C -0.114 4.114
19 C -0.110 4.110
20 C 0.065 3.935
21 N -0.864 5.864
22 H 0.290 0.710
23 H 0.129 0.871
24 H 0.185 0.815
25 H 0.400 0.600
26 H 0.044 0.956
27 H 0.047 0.953
28 H 0.079 0.921
29 H 0.077 0.923
30 H 0.062 0.938
31 H 0.064 0.936
32 H 0.036 0.964
33 H 0.073 0.927
34 H 0.346 0.654
35 H 0.351 0.649
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.901 -12.794 -0.800 13.724
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.410 5.410
2 C -0.217 4.217
3 Si 0.935 3.065
4 H -0.181 1.181
5 H -0.182 1.182
6 H -0.194 1.194
7 C -0.499 4.499
8 H 0.098 0.902
9 C 0.078 3.922
10 C -0.206 4.206
11 C -0.302 4.302
12 S 0.289 5.711
13 C -0.593 4.593
14 C 0.382 3.618
15 O -0.493 6.493
16 N -0.389 5.389
17 C 0.003 3.997
18 C -0.152 4.152
19 C -0.149 4.149
20 C -0.066 4.066
21 N -0.395 5.395
22 H 0.103 0.897
23 H 0.147 0.853
24 H 0.203 0.797
25 H 0.235 0.765
26 H 0.062 0.938
27 H 0.066 0.934
28 H 0.098 0.902
29 H 0.096 0.904
30 H 0.081 0.919
31 H 0.083 0.917
32 H 0.055 0.945
33 H 0.091 0.909
34 H 0.159 0.841
35 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 4.615 -11.747 -1.666 12.730
hybrid contribution 0.276 -0.904 0.895 1.301
sum 4.891 -12.651 -0.771 13.585
Atomic orbital electron populations
1.70530 1.08533 1.33748 1.28206 1.28763 0.95808 1.07513 0.89650
0.82977 0.74872 0.69513 0.79130 1.18051 1.18191 1.19443 1.20977
1.01365 0.93298 1.34248 0.90174 1.18374 0.90674 0.92833 0.90303
1.21462 0.99353 0.98171 1.01639 1.25507 1.04386 0.95639 1.04681
1.82307 1.28592 1.10181 1.49994 1.23003 1.15290 0.96305 1.24698
1.17088 0.82679 0.82275 0.79720 1.90623 1.54132 1.46862 1.57644
1.45666 1.35416 1.06754 1.51060 1.21247 0.88734 0.97166 0.92557
1.21634 1.00181 0.92256 1.01115 1.21417 0.97776 0.96463 0.99222
1.21727 0.95240 0.94928 0.94684 1.58673 1.08509 1.19420 1.52885
0.89659 0.85325 0.79735 0.76500 0.93770 0.93435 0.90247 0.90445
0.91905 0.91745 0.94541 0.90885 0.84125 0.83548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -40.82 12.49 21.89 0.27 -40.55 16
2 C 0.00 0.11 5.24 85.37 0.45 0.55 16
3 Si 1.12 44.11 29.98 68.60 2.06 46.17 16
4 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16
5 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16
6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16
7 C -0.47 -26.81 8.44 23.33 0.20 -26.62 16
8 H 0.08 4.95 6.13 -2.91 -0.02 4.94 16
9 C 0.09 4.87 5.40 -20.89 -0.11 4.76 16
10 C -0.17 -8.19 8.19 22.61 0.19 -8.01 16
11 C -0.17 -6.64 11.07 66.64 0.74 -5.90 16
12 S 0.03 1.30 22.25 -56.49 -1.26 0.04 16
13 C -0.47 -24.41 6.51 24.66 0.16 -24.25 16
14 C 0.59 30.10 7.76 86.32 0.67 30.77 16
15 O -0.61 -35.78 14.46 -4.55 -0.07 -35.85 16
16 N -0.74 -28.88 5.55 -467.47 -2.59 -31.47 16
17 C 0.13 4.15 5.67 86.38 0.49 4.64 16
18 C -0.11 -2.50 5.33 30.59 0.16 -2.34 16
19 C -0.11 -2.14 5.47 30.60 0.17 -1.97 16
20 C 0.06 1.03 6.79 86.30 0.59 1.61 16
21 N -0.86 -12.74 9.62 -186.71 -1.80 -14.53 16
22 H 0.29 15.36 6.23 -92.71 -0.58 14.79 16
23 H 0.13 6.05 6.79 -2.91 -0.02 6.03 16
24 H 0.19 5.62 8.06 -2.91 -0.02 5.60 16
25 H 0.40 13.62 7.55 -92.71 -0.70 12.92 16
26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
29 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16
30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
32 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16
33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
34 H 0.35 4.43 8.99 -89.69 -0.81 3.62 16
35 H 0.35 3.84 9.08 -89.70 -0.81 3.03 16
Total: -1.00 -68.12 309.51 -0.69 -68.80
By element:
Atomic # 1 Polarization: 35.13 SS G_CDS: -0.99 Total: 34.13 kcal
Atomic # 6 Polarization: -30.44 SS G_CDS: 3.69 Total: -26.75 kcal
Atomic # 7 Polarization: -82.44 SS G_CDS: -4.12 Total: -86.55 kcal
Atomic # 8 Polarization: -35.78 SS G_CDS: -0.07 Total: -35.85 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.06 Total: 46.17 kcal
Atomic # 16 Polarization: 1.30 SS G_CDS: -1.26 Total: 0.04 kcal
Total: -68.12 -0.69 -68.80 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118992751.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.166 kcal
(2) G-P(sol) polarization free energy of solvation -68.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.950 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds