Wall clock time and date at job start Mon Mar 30 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35309 * 117.00186 * 2 1 4 4 N 1.32794 * 119.98731 * 0.02562 * 3 2 1 5 5 C 1.32791 * 120.03839 * 179.97438 * 4 3 2 6 6 O 1.35313 * 119.98287 * 179.97438 * 5 4 3 7 7 C 1.42899 * 117.00124 * 359.97438 * 6 5 4 8 8 N 1.32717 * 120.02398 * 359.97438 * 5 4 3 9 9 C 1.32960 * 119.97918 * 0.02562 * 8 5 4 10 10 N 1.37996 * 120.01938 * 179.97438 * 9 8 5 11 11 C 1.46498 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.46500 * 119.99710 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.47481 * 0.02562 * 12 10 9 14 14 C 1.53001 * 109.46746 * 120.00896 * 12 10 9 15 15 C 1.50694 * 109.47517 * 240.00596 * 12 10 9 16 16 H 1.08002 * 120.00179 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00472 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99350 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00608 * 179.97438 * 17 15 12 20 20 H 1.48490 * 109.47339 * 179.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 300.00306 * 19 17 15 22 22 H 1.48504 * 109.46636 * 59.99865 * 19 17 15 23 23 N 1.32722 * 119.99168 * 180.24894 * 3 2 1 24 24 H 1.09004 * 109.47314 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47704 * 299.99883 * 1 2 3 26 26 H 1.09004 * 109.47060 * 59.99524 * 1 2 3 27 27 H 1.09001 * 109.46915 * 59.99970 * 7 6 5 28 28 H 1.09008 * 109.46685 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.47229 * 300.00074 * 7 6 5 30 30 H 1.09004 * 109.46952 * 269.98813 * 11 10 9 31 31 H 1.08996 * 109.47624 * 29.99332 * 11 10 9 32 32 H 1.09005 * 109.46962 * 149.99740 * 11 10 9 33 33 H 1.09007 * 109.47140 * 300.00315 * 14 12 10 34 34 H 1.09000 * 109.47809 * 59.99872 * 14 12 10 35 35 H 1.09000 * 109.47703 * 180.02562 * 14 12 10 36 36 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0433 1.2056 0.0000 4 7 1.3198 2.3192 0.0005 5 6 1.9217 3.5029 0.0010 6 8 1.1834 4.6368 0.0010 7 6 -0.2376 4.4858 -0.0001 8 7 3.2469 3.5740 0.0015 9 6 3.9721 2.4596 0.0010 10 7 5.3501 2.5326 0.0010 11 6 6.0144 3.8383 0.0022 12 6 6.1487 1.3044 0.0010 13 1 5.4852 0.4396 0.0006 14 6 7.0315 1.2701 -1.2481 15 6 7.0180 1.2703 1.2315 16 1 6.9792 2.0821 1.9427 17 6 7.8628 0.2027 1.4494 18 7 7.9096 -0.7861 0.5836 19 14 8.9410 0.1608 2.9743 20 1 9.7502 -1.0842 2.9743 21 1 9.8446 1.3391 2.9742 22 1 8.0845 0.1939 4.1870 23 7 3.3687 1.2748 -0.0050 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.5453 3.9361 0.8894 28 1 -0.7075 5.4695 -0.0004 29 1 -0.5440 3.9369 -0.8906 30 1 6.1793 4.1629 -1.0253 31 1 5.3861 4.5653 0.5165 32 1 6.9725 3.7580 0.5159 33 1 6.4027 1.2948 -2.1382 34 1 7.6950 2.1349 -1.2481 35 1 7.6253 0.3561 -1.2485 36 1 8.5043 -1.5371 0.7367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:33 Heat of formation + Delta-G solvation = 0.192022 kcal Electronic energy + Delta-G solvation = -20918.601130 eV Core-core repulsion = 17632.939523 eV Total energy + Delta-G solvation = -3285.661607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.74316 -40.14993 -39.76608 -38.03718 -35.14126 -34.13933 -33.50896 -31.08981 -29.02805 -28.36123 -27.53475 -27.27687 -25.19090 -24.28158 -22.04576 -20.17124 -20.02471 -18.51101 -18.12192 -17.96691 -17.51827 -16.77581 -16.59918 -16.02195 -15.78064 -15.40698 -15.16639 -15.05531 -14.59009 -14.27643 -13.55567 -13.08795 -13.04403 -12.99189 -12.89368 -12.78743 -12.73590 -12.68696 -12.46858 -12.14514 -12.07915 -11.43433 -11.14974 -10.79416 -10.70542 -10.59169 -10.34872 -9.12761 -8.12079 -6.28165 0.11288 0.17050 1.07439 1.45134 1.46598 1.52773 1.54509 2.10527 2.44534 2.82989 2.93249 3.16318 3.54315 4.08426 4.38803 4.39642 4.42704 4.42965 4.56330 4.69197 4.70299 4.74117 4.75384 4.90277 5.00498 5.05429 5.24884 5.33326 5.55787 5.58542 5.72684 5.85552 6.10520 6.25484 6.31411 6.51437 6.78710 7.36140 7.45503 8.91702 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.005543 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.072079 B = 5050.350621 C = 5628.249251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.300 6.300 3 C 0.587 3.413 4 N -0.677 5.677 5 C 0.587 3.413 6 O -0.292 6.292 7 C 0.038 3.962 8 N -0.641 5.641 9 C 0.635 3.365 10 N -0.542 5.542 11 C 0.103 3.897 12 C 0.271 3.729 13 H 0.039 0.961 14 C -0.132 4.132 15 C -0.542 4.542 16 H 0.057 0.943 17 C 0.024 3.976 18 N -0.911 5.911 19 Si 0.963 3.037 20 H -0.282 1.282 21 H -0.265 1.265 22 H -0.280 1.280 23 N -0.650 5.650 24 H 0.134 0.866 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.019 0.981 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.778 7.229 -1.745 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.198 6.198 3 C 0.277 3.723 4 N -0.439 5.439 5 C 0.276 3.724 6 O -0.190 6.190 7 C -0.056 4.056 8 N -0.391 5.391 9 C 0.274 3.726 10 N -0.253 5.253 11 C -0.039 4.039 12 C 0.170 3.830 13 H 0.057 0.943 14 C -0.191 4.191 15 C -0.581 4.581 16 H 0.075 0.925 17 C -0.177 4.177 18 N -0.549 5.549 19 Si 0.788 3.212 20 H -0.207 1.207 21 H -0.190 1.190 22 H -0.206 1.206 23 N -0.398 5.398 24 H 0.152 0.848 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.402 7.063 -1.796 16.141 hybrid contribution 0.216 -0.402 0.683 0.821 sum -14.187 6.662 -1.113 15.713 Atomic orbital electron populations 1.23372 0.73010 1.05753 1.03428 1.86125 1.26056 1.21613 1.86005 1.20261 0.84898 0.84775 0.82405 1.68271 1.40751 0.98196 1.36636 1.20271 0.85435 0.84377 0.82298 1.86099 1.22888 1.23890 1.86122 1.23376 0.73172 1.05798 1.03290 1.67704 1.05308 1.31371 1.34692 1.18883 0.87909 0.81827 0.83976 1.47079 0.98621 1.10394 1.69222 1.21706 0.98058 0.82001 1.02160 1.18884 0.88837 0.80714 0.94610 0.94306 1.21910 0.99322 1.02606 0.95261 1.21470 1.23280 1.06478 1.06855 0.92477 1.25607 0.97941 0.94727 0.99414 1.69992 1.38777 1.09431 1.36739 0.85544 0.78564 0.77794 0.79296 1.20683 1.18951 1.20568 1.67783 1.09602 1.28836 1.33587 0.84773 0.91276 0.91081 0.91539 0.84335 0.91404 0.91877 0.90350 0.90076 0.96222 0.93647 0.90611 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.39 113.37 1.18 1.98 16 2 O -0.30 -10.31 10.55 -85.96 -0.91 -11.21 16 3 C 0.59 23.36 8.55 180.30 1.54 24.90 16 4 N -0.68 -23.32 8.26 -430.99 -3.56 -26.89 16 5 C 0.59 21.17 8.55 180.30 1.54 22.71 16 6 O -0.29 -8.40 10.55 -86.00 -0.91 -9.31 16 7 C 0.04 0.66 10.39 113.37 1.18 1.84 16 8 N -0.64 -26.48 9.28 -315.86 -2.93 -29.41 16 9 C 0.64 29.10 8.19 261.27 2.14 31.24 16 10 N -0.54 -24.89 2.84 -715.43 -2.03 -26.92 16 11 C 0.10 3.86 9.45 127.77 1.21 5.06 16 12 C 0.27 14.03 2.66 44.24 0.12 14.15 16 13 H 0.04 2.31 6.80 -2.39 -0.02 2.30 16 14 C -0.13 -6.39 8.97 71.98 0.65 -5.74 16 15 C -0.54 -29.39 7.99 25.60 0.20 -29.18 16 16 H 0.06 3.06 7.33 -2.91 -0.02 3.04 16 17 C 0.02 1.27 5.30 84.66 0.45 1.72 16 18 N -0.91 -51.32 11.32 21.45 0.24 -51.08 16 19 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 N -0.65 -30.71 9.01 -315.86 -2.85 -33.56 16 24 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 26 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 27 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 28 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 30 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.08 2.77 7.36 -2.39 -0.02 2.75 16 32 H 0.08 3.04 7.02 -2.38 -0.02 3.02 16 33 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.04 2.01 7.67 -2.39 -0.02 1.99 16 35 H 0.08 4.00 6.07 -2.39 -0.01 3.99 16 36 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -67.53 308.66 0.38 -67.15 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.09 Total: 7.68 kcal Atomic # 6 Polarization: 58.47 SS G_CDS: 10.20 Total: 68.67 kcal Atomic # 7 Polarization: -156.72 SS G_CDS: -11.13 Total: -167.85 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -1.81 Total: -20.53 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.53 0.38 -67.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.344 kcal (2) G-P(sol) polarization free energy of solvation -67.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds