Wall clock time and date at job start Mon Mar 30 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99667 * 2 1 4 4 C 1.52995 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46915 * 65.00440 * 4 3 2 6 6 C 1.46497 * 119.99997 * 269.99586 * 5 4 3 7 7 C 1.50695 * 109.47447 * 270.00190 * 6 5 4 8 8 H 1.07998 * 120.00072 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00189 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99550 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47505 * 59.99849 * 11 9 7 13 13 H 1.48507 * 109.47305 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46931 * 299.99563 * 11 9 7 15 15 C 1.39664 * 120.00164 * 90.00054 * 5 4 3 16 16 C 1.38806 * 120.02383 * 179.97438 * 15 5 4 17 17 C 1.38772 * 119.90007 * 180.02562 * 16 15 5 18 18 N 1.39665 * 120.02632 * 179.97438 * 17 16 15 19 19 C 1.38952 * 119.95486 * 0.02562 * 17 16 15 20 20 C 1.38361 * 120.04409 * 359.97438 * 19 17 16 21 21 F 1.35108 * 119.94868 * 179.97438 * 20 19 17 22 22 C 1.38404 * 120.10267 * 0.02562 * 20 19 17 23 23 H 1.09003 * 109.46671 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47330 * 299.99121 * 1 2 3 25 25 H 1.08998 * 109.47575 * 59.99735 * 1 2 3 26 26 H 1.09005 * 109.46862 * 60.00627 * 3 2 1 27 27 H 1.09000 * 109.47485 * 300.00923 * 3 2 1 28 28 H 1.09001 * 109.47305 * 305.00117 * 4 3 2 29 29 H 1.09004 * 109.47266 * 185.00482 * 4 3 2 30 30 H 1.09003 * 109.47284 * 30.00290 * 6 5 4 31 31 H 1.09001 * 109.47346 * 150.00120 * 6 5 4 32 32 H 0.96999 * 119.99576 * 180.02562 * 10 9 7 33 33 H 1.07994 * 120.05126 * 0.02562 * 16 15 5 34 34 H 0.97005 * 119.99464 * 359.97438 * 18 17 16 35 35 H 0.96991 * 120.00368 * 180.02562 * 18 17 16 36 36 H 1.07997 * 119.97728 * 179.97438 * 19 17 16 37 37 H 1.07993 * 119.97854 * 180.27955 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9755 0.5647 -1.2528 6 6 4.1052 -0.8917 -1.3429 7 6 5.5010 -1.2974 -0.9452 8 1 6.2198 -0.5455 -0.6547 9 6 5.8607 -2.6285 -0.9531 10 7 4.9856 -3.5440 -1.3073 11 14 7.5907 -3.1313 -0.4594 12 1 7.8532 -2.6971 0.9362 13 1 7.7222 -4.6077 -0.5508 14 1 8.5718 -2.4891 -1.3705 15 6 4.2717 1.3620 -2.3606 16 6 4.6893 0.7750 -3.5471 17 6 4.9834 1.5696 -4.6461 18 7 5.4043 0.9818 -5.8410 19 6 4.8598 2.9508 -4.5565 20 6 4.4433 3.5337 -3.3728 21 9 4.3243 4.8768 -3.2878 22 6 4.1495 2.7431 -2.2755 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6885 1.8464 0.8901 27 1 1.6884 1.8465 -0.8899 28 1 3.8514 0.5684 0.8409 29 1 3.9784 2.1767 0.0890 30 1 3.3853 -1.3628 -0.6736 31 1 3.9120 -1.2111 -2.3670 32 1 5.2385 -4.4804 -1.3125 33 1 4.7852 -0.2986 -3.6149 34 1 5.4916 0.0177 -5.9028 35 1 5.6101 1.5376 -6.6088 36 1 5.0890 3.5696 -5.4114 37 1 3.8202 3.1999 -1.3540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071225524.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:00 Heat of formation + Delta-G solvation = -59.813649 kcal Electronic energy + Delta-G solvation = -20686.527202 eV Core-core repulsion = 17378.343592 eV Total energy + Delta-G solvation = -3308.183610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.40255 -39.04112 -37.59155 -35.89419 -33.43320 -32.51565 -30.40079 -28.72027 -27.99132 -26.49684 -25.62869 -23.05629 -22.59162 -21.28191 -19.90339 -17.37962 -16.83522 -16.40101 -16.10055 -15.74663 -15.51130 -15.08638 -14.94465 -14.72859 -14.47282 -14.45919 -14.02235 -13.56690 -12.92546 -12.42638 -12.21675 -11.98891 -11.78474 -11.58100 -11.31087 -11.06032 -10.93523 -10.86734 -10.75034 -10.38203 -10.25596 -9.93263 -9.54736 -9.33650 -8.64236 -8.42997 -7.17729 -6.55922 -5.99145 -4.09997 2.01039 2.29126 3.30781 3.35028 3.38342 3.90369 4.14208 4.30516 4.42874 4.49697 4.97159 5.28227 5.38318 5.45863 5.55944 5.62140 5.64470 5.67698 5.77371 5.85210 5.91805 6.02034 6.07831 6.32789 6.43129 6.76236 6.85909 7.01105 7.13446 7.39043 7.49334 7.54221 7.86459 7.90866 8.15332 8.23175 8.29567 8.49800 8.98246 9.55414 11.02086 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.007642 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.177296 B = 3663.023000 C = 5152.396820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.043 3.957 4 C 0.124 3.876 5 N -0.593 5.593 6 C 0.253 3.747 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.301 3.699 16 C -0.270 4.270 17 C 0.276 3.724 18 N -0.876 5.876 19 C -0.308 4.308 20 C 0.176 3.824 21 F -0.151 7.151 22 C -0.304 4.304 23 H 0.082 0.918 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.137 0.863 34 H 0.400 0.600 35 H 0.393 0.607 36 H 0.116 0.884 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 9.621 -2.834 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.036 4.036 4 C -0.001 4.001 5 N -0.296 5.296 6 C 0.134 3.866 7 C -0.570 4.570 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.191 3.809 16 C -0.298 4.298 17 C 0.170 3.830 18 N -0.415 5.415 19 C -0.333 4.333 20 C 0.155 3.845 21 F -0.130 7.130 22 C -0.329 4.329 23 H 0.101 0.899 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.228 0.772 35 H 0.220 0.780 36 H 0.134 0.866 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.857 9.146 -2.603 10.678 hybrid contribution 0.848 -0.033 -0.024 0.849 sum -4.009 9.113 -2.626 10.297 Atomic orbital electron populations 1.22681 0.82233 1.02401 0.99102 1.88076 1.18580 1.27228 1.95158 1.23147 0.95691 0.85184 0.99529 1.21390 0.90861 0.99073 0.88755 1.47154 1.67117 1.07668 1.07684 1.19339 0.96605 0.72425 0.98261 1.21573 0.97589 0.92179 1.45616 0.92398 1.24927 0.97302 0.96426 0.95328 1.69935 1.34290 1.01056 1.47998 0.86627 0.84807 0.77226 0.79163 1.20291 1.21297 1.20257 1.17229 0.87824 0.88683 0.87166 1.20232 1.16917 1.00575 0.92086 1.17071 0.89351 0.90543 0.86010 1.42408 1.77425 1.09840 1.11835 1.19908 1.21201 0.93556 0.98630 1.16915 0.97718 0.75680 0.94140 1.91414 1.93733 1.30902 1.96960 1.20193 1.20744 0.92561 0.99449 0.89906 0.94802 0.94612 0.93459 0.93359 0.89501 0.90094 0.93635 0.94954 0.92741 0.84560 0.77184 0.77993 0.86587 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.67 9.53 -35.23 -0.34 -7.01 16 3 C 0.04 0.67 6.28 37.16 0.23 0.90 16 4 C 0.12 2.17 5.56 -4.04 -0.02 2.15 16 5 N -0.59 -12.46 2.55 -173.16 -0.44 -12.91 16 6 C 0.25 6.32 4.73 -5.20 -0.02 6.30 16 7 C -0.53 -14.38 9.39 -34.44 -0.32 -14.71 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 11 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.30 6.07 6.55 -83.83 -0.55 5.52 16 16 C -0.27 -5.41 9.05 -39.17 -0.35 -5.76 16 17 C 0.28 4.74 6.75 -83.83 -0.57 4.18 16 18 N -0.88 -11.75 9.09 32.39 0.29 -11.46 16 19 C -0.31 -5.13 9.87 -39.27 -0.39 -5.52 16 20 C 0.18 3.08 7.29 -39.48 -0.29 2.79 16 21 F -0.15 -2.53 17.26 2.25 0.04 -2.50 16 22 C -0.30 -5.50 9.18 -39.27 -0.36 -5.86 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 29 H 0.08 1.23 6.20 -51.93 -0.32 0.91 16 30 H 0.05 1.23 7.12 -51.93 -0.37 0.86 16 31 H 0.03 0.86 6.19 -51.93 -0.32 0.54 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.14 2.99 6.14 -52.49 -0.32 2.67 16 34 H 0.40 5.07 8.84 -40.82 -0.36 4.71 16 35 H 0.39 4.16 8.84 -40.82 -0.36 3.80 16 36 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.12 1.98 6.13 -52.49 -0.32 1.66 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -30.02 316.10 -6.47 -36.49 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.88 Total: 8.05 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.63 Total: -6.86 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.59 Total: -49.23 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.34 Total: -7.01 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.02 -6.47 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071225524.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.323 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds