Wall clock time and date at job start Mon Mar 30 2020 06:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99667 * 2 1 4 4 C 1.52995 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46915 * 65.00440 * 4 3 2 6 6 C 1.46497 * 119.99997 * 269.99586 * 5 4 3 7 7 C 1.50695 * 109.47447 * 270.00190 * 6 5 4 8 8 H 1.07998 * 120.00072 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00189 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99550 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47505 * 59.99849 * 11 9 7 13 13 H 1.48507 * 109.47305 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46931 * 299.99563 * 11 9 7 15 15 C 1.39664 * 120.00164 * 90.00054 * 5 4 3 16 16 C 1.38806 * 120.02383 * 179.97438 * 15 5 4 17 17 C 1.38772 * 119.90007 * 180.02562 * 16 15 5 18 18 N 1.39665 * 120.02632 * 179.97438 * 17 16 15 19 19 C 1.38952 * 119.95486 * 0.02562 * 17 16 15 20 20 C 1.38361 * 120.04409 * 359.97438 * 19 17 16 21 21 F 1.35108 * 119.94868 * 179.97438 * 20 19 17 22 22 C 1.38404 * 120.10267 * 0.02562 * 20 19 17 23 23 H 1.09003 * 109.46671 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47330 * 299.99121 * 1 2 3 25 25 H 1.08998 * 109.47575 * 59.99735 * 1 2 3 26 26 H 1.09005 * 109.46862 * 60.00627 * 3 2 1 27 27 H 1.09000 * 109.47485 * 300.00923 * 3 2 1 28 28 H 1.09001 * 109.47305 * 305.00117 * 4 3 2 29 29 H 1.09004 * 109.47266 * 185.00482 * 4 3 2 30 30 H 1.09003 * 109.47284 * 30.00290 * 6 5 4 31 31 H 1.09001 * 109.47346 * 150.00120 * 6 5 4 32 32 H 0.96999 * 119.99576 * 180.02562 * 10 9 7 33 33 H 1.07994 * 120.05126 * 0.02562 * 16 15 5 34 34 H 0.97005 * 119.99464 * 359.97438 * 18 17 16 35 35 H 0.96991 * 120.00368 * 180.02562 * 18 17 16 36 36 H 1.07997 * 119.97728 * 179.97438 * 19 17 16 37 37 H 1.07993 * 119.97854 * 180.27955 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9755 0.5647 -1.2528 6 6 4.1052 -0.8917 -1.3429 7 6 5.5010 -1.2974 -0.9452 8 1 6.2198 -0.5455 -0.6547 9 6 5.8607 -2.6285 -0.9531 10 7 4.9856 -3.5440 -1.3073 11 14 7.5907 -3.1313 -0.4594 12 1 7.8532 -2.6971 0.9362 13 1 7.7222 -4.6077 -0.5508 14 1 8.5718 -2.4891 -1.3705 15 6 4.2717 1.3620 -2.3606 16 6 4.6893 0.7750 -3.5471 17 6 4.9834 1.5696 -4.6461 18 7 5.4043 0.9818 -5.8410 19 6 4.8598 2.9508 -4.5565 20 6 4.4433 3.5337 -3.3728 21 9 4.3243 4.8768 -3.2878 22 6 4.1495 2.7431 -2.2755 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6885 1.8464 0.8901 27 1 1.6884 1.8465 -0.8899 28 1 3.8514 0.5684 0.8409 29 1 3.9784 2.1767 0.0890 30 1 3.3853 -1.3628 -0.6736 31 1 3.9120 -1.2111 -2.3670 32 1 5.2385 -4.4804 -1.3125 33 1 4.7852 -0.2986 -3.6149 34 1 5.4916 0.0177 -5.9028 35 1 5.6101 1.5376 -6.6088 36 1 5.0890 3.5696 -5.4114 37 1 3.8202 3.1999 -1.3540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071225524.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:58 Heat of formation + Delta-G solvation = -79.142490 kcal Electronic energy + Delta-G solvation = -20687.365364 eV Core-core repulsion = 17378.343592 eV Total energy + Delta-G solvation = -3309.021772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.75009 -40.48972 -38.87414 -37.35198 -35.09773 -34.24083 -31.82689 -30.39405 -29.33623 -28.05295 -26.98132 -24.86555 -23.95388 -22.74651 -21.38386 -18.83159 -18.48452 -18.12997 -17.39665 -17.03245 -16.91616 -16.57133 -16.43826 -16.25109 -15.80504 -15.75346 -15.50357 -15.08515 -14.59039 -13.89121 -13.68651 -13.42015 -13.35500 -13.15111 -12.85112 -12.70527 -12.53649 -12.37820 -12.22930 -12.05359 -11.88312 -11.64453 -11.37135 -10.58785 -10.51394 -10.13716 -8.53158 -8.31513 -7.88142 -6.28983 0.57843 0.87912 1.40240 1.41466 1.49638 2.34389 2.50713 2.95184 3.03848 3.06848 3.13973 3.60568 4.18646 4.21373 4.28864 4.40408 4.45122 4.51245 4.54825 4.55490 4.61157 4.72375 4.84858 4.91739 5.03804 5.18952 5.34503 5.39365 5.49715 5.57421 5.77115 5.96679 6.16521 6.35144 6.48933 6.64384 6.89092 6.93810 7.10041 7.41433 8.90435 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.007642 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.177296 B = 3663.023000 C = 5152.396820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.605 5.605 6 C 0.278 3.722 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.014 3.986 10 N -0.925 5.925 11 Si 0.958 3.042 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.273 1.273 15 C 0.283 3.717 16 C -0.298 4.298 17 C 0.283 3.717 18 N -0.861 5.861 19 C -0.302 4.302 20 C 0.177 3.823 21 F -0.144 7.144 22 C -0.305 4.305 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.017 0.983 31 H 0.006 0.994 32 H 0.265 0.735 33 H 0.106 0.894 34 H 0.404 0.596 35 H 0.410 0.590 36 H 0.144 0.856 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 11.444 -3.157 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.309 5.309 6 C 0.156 3.844 7 C -0.579 4.579 8 H 0.068 0.932 9 C -0.185 4.185 10 N -0.565 5.565 11 Si 0.783 3.217 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.198 1.198 15 C 0.175 3.825 16 C -0.327 4.327 17 C 0.174 3.826 18 N -0.400 5.400 19 C -0.327 4.327 20 C 0.156 3.844 21 F -0.122 7.122 22 C -0.330 4.330 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.035 0.965 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.233 0.767 35 H 0.240 0.760 36 H 0.162 0.838 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.334 11.005 -2.962 12.193 hybrid contribution 0.655 -0.541 -0.014 0.850 sum -3.679 10.464 -2.976 11.484 Atomic orbital electron populations 1.22845 0.80196 1.03082 1.00641 1.88025 1.21016 1.28795 1.95483 1.23130 0.94051 0.84682 1.01094 1.21591 0.92643 0.99528 0.86647 1.46960 1.68455 1.06135 1.09324 1.18712 0.94813 0.75153 0.95677 1.21797 0.98368 0.92297 1.45397 0.93167 1.25721 1.01127 0.96428 0.95238 1.70052 1.36198 1.01351 1.48929 0.85617 0.80078 0.77042 0.78956 1.19626 1.20622 1.19809 1.17419 0.88648 0.89566 0.86876 1.20166 1.19286 0.99457 0.93747 1.17083 0.88496 0.90766 0.86223 1.42377 1.76027 1.10398 1.11246 1.20170 1.19958 0.93318 0.99290 1.16984 0.97267 0.75957 0.94194 1.91435 1.93613 1.30264 1.96936 1.20260 1.20658 0.91509 1.00548 0.89817 0.92292 0.93890 0.90029 0.93295 0.91274 0.87597 0.96462 0.97564 0.92599 0.87598 0.76739 0.75975 0.83806 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -14.99 9.53 -148.98 -1.42 -16.41 16 3 C 0.05 1.45 6.28 71.98 0.45 1.91 16 4 C 0.12 4.18 5.56 86.38 0.48 4.66 16 5 N -0.60 -26.09 2.55 -701.75 -1.79 -27.88 16 6 C 0.28 14.61 4.73 85.63 0.40 15.01 16 7 C -0.54 -30.23 9.39 25.60 0.24 -29.98 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.01 0.78 5.46 84.66 0.46 1.25 16 10 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 11 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 C 0.28 11.50 6.55 38.19 0.25 11.75 16 16 C -0.30 -12.18 9.05 22.53 0.20 -11.97 16 17 C 0.28 9.36 6.75 38.19 0.26 9.62 16 18 N -0.86 -21.68 9.09 -51.43 -0.47 -22.15 16 19 C -0.30 -9.28 9.87 22.47 0.22 -9.05 16 20 C 0.18 5.76 7.29 22.34 0.16 5.92 16 21 F -0.14 -4.38 17.26 44.97 0.78 -3.61 16 22 C -0.30 -10.58 9.18 22.47 0.21 -10.38 16 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 2.62 8.07 -2.39 -0.02 2.61 16 29 H 0.11 3.09 6.20 -2.38 -0.01 3.08 16 30 H 0.02 1.00 7.12 -2.39 -0.02 0.98 16 31 H 0.01 0.36 6.19 -2.39 -0.01 0.35 16 32 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.11 4.94 6.14 -2.91 -0.02 4.92 16 34 H 0.40 9.91 8.84 -92.70 -0.82 9.09 16 35 H 0.41 7.57 8.84 -92.72 -0.82 6.75 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.14 4.20 6.13 -2.91 -0.02 4.18 16 Total: -1.00 -65.81 316.10 3.47 -62.35 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.53 Total: 25.09 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.59 Total: -9.28 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -1.97 Total: -104.28 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -1.42 Total: -16.41 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -65.81 3.47 -62.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071225524.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.797 kcal (2) G-P(sol) polarization free energy of solvation -65.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds