Wall clock time and date at job start Mon Mar 30 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.39813 * 110.99945 * 172.61055 * 12 11 10 14 14 C 1.38898 * 120.03610 * 124.03065 * 13 12 11 15 15 C 1.38145 * 119.98971 * 179.74298 * 14 13 12 16 16 C 1.38410 * 120.07507 * 0.50973 * 15 14 13 17 17 F 1.35104 * 119.96187 * 179.74711 * 16 15 14 18 18 C 1.38668 * 120.07846 * 359.76510 * 16 15 14 19 19 F 1.35101 * 119.99520 * 180.02562 * 18 16 15 20 20 C 1.38328 * 120.00396 * 359.97438 * 18 16 15 21 21 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 22 22 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 23 23 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 25 25 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 26 26 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 27 27 H 1.08995 * 109.42457 * 173.94854 * 11 10 9 28 28 H 1.08002 * 120.00825 * 359.97438 * 14 13 12 29 29 H 1.07998 * 119.96161 * 180.25397 * 15 14 13 30 30 H 1.07996 * 120.03420 * 180.02562 * 20 18 16 31 31 H 1.09001 * 109.49186 * 303.14219 * 21 12 11 32 32 H 1.09000 * 109.51153 * 183.07955 * 21 12 11 33 33 H 1.09004 * 109.62440 * 350.90141 * 22 9 7 34 34 H 1.09004 * 109.62907 * 111.27775 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8356 -5.6366 -2.8104 14 6 1.9829 -6.4069 -2.9506 15 6 2.0467 -7.3785 -3.9305 16 6 0.9724 -7.5785 -4.7800 17 9 1.0392 -8.5260 -5.7408 18 6 -0.1723 -6.8073 -4.6463 19 9 -1.2201 -7.0043 -5.4761 20 6 -0.2417 -5.8371 -3.6628 21 6 2.0102 -4.6146 -1.0325 22 6 1.8303 -3.6617 0.1539 23 1 -0.4851 0.8399 0.0004 24 1 -0.6867 -2.6167 -0.7035 25 1 0.0888 -1.3354 -1.6717 26 1 1.2942 -3.0054 -3.0036 27 1 -0.4378 -3.4179 -3.0099 28 1 2.8236 -6.2488 -2.2913 29 1 2.9374 -7.9800 -4.0365 30 1 -1.1331 -5.2365 -3.5580 31 1 2.8259 -4.2606 -1.6630 32 1 2.2425 -5.6140 -0.6644 33 1 2.7815 -3.5379 0.6717 34 1 1.0884 -4.0657 0.8427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082548696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:49 Heat of formation + Delta-G solvation = -23.831169 kcal Electronic energy + Delta-G solvation = -20217.942324 eV Core-core repulsion = 16787.858727 eV Total energy + Delta-G solvation = -3430.083598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.40325 -48.47584 -40.02933 -37.27782 -34.44791 -31.72667 -31.13529 -30.02316 -28.91792 -26.24482 -23.99460 -23.48916 -22.01524 -21.59995 -19.41451 -18.20604 -17.24006 -17.04019 -16.59509 -16.24034 -15.64789 -14.91034 -14.82594 -14.54602 -14.49328 -14.17278 -13.85846 -13.63050 -13.36506 -13.14364 -12.70565 -12.34688 -11.96389 -11.74921 -11.28882 -11.19321 -10.81880 -10.70957 -10.52533 -10.26742 -9.90786 -9.84510 -9.51279 -8.98854 -8.60615 -7.69162 -6.82907 -5.89546 -3.31704 0.95611 1.02890 3.31433 3.32148 3.39477 3.40613 3.72934 4.03846 4.39844 4.41942 4.56810 4.93239 5.06515 5.20768 5.26972 5.33529 5.57085 5.68341 5.74721 5.83108 5.88544 5.94848 6.00961 6.06928 6.08134 6.33586 6.44509 6.65925 6.75153 7.01783 7.34682 7.39941 7.49454 7.69616 8.30541 9.08400 9.71186 10.28405 11.19601 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.004304 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.934777 B = 6504.440447 C = 6820.372272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.175 3.825 11 C 0.036 3.964 12 N -0.480 5.480 13 C 0.150 3.850 14 C -0.162 4.162 15 C -0.095 4.095 16 C 0.020 3.980 17 F -0.138 7.138 18 C 0.096 3.904 19 F -0.131 7.131 20 C -0.159 4.159 21 C 0.036 3.964 22 C 0.146 3.854 23 H 0.256 0.744 24 H 0.031 0.969 25 H 0.096 0.904 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 -12.373 -6.936 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.090 4.090 12 N -0.193 5.193 13 C 0.049 3.951 14 C -0.183 4.183 15 C -0.114 4.114 16 C -0.002 4.002 17 F -0.117 7.117 18 C 0.075 3.925 19 F -0.110 7.110 20 C -0.180 4.180 21 C -0.092 4.092 22 C 0.019 3.981 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.114 0.886 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.094 -12.256 -6.574 14.065 hybrid contribution 0.675 0.730 -0.760 1.251 sum 2.770 -11.526 -7.334 13.940 Atomic orbital electron populations 1.70011 1.05258 1.25728 1.53674 1.25036 0.95314 0.98481 1.00662 0.86254 0.79167 0.83576 0.77652 1.21414 1.21676 1.20345 1.19210 0.92802 0.84697 1.41903 0.91378 1.44159 1.34387 1.01279 1.51997 1.21049 0.89254 0.96759 0.88090 1.23259 0.99914 0.86640 0.99189 1.58971 1.34294 1.06132 1.19871 1.19071 0.91831 0.94692 0.89483 1.21320 0.97923 0.98707 1.00388 1.20871 0.97394 0.98674 0.94496 1.17499 0.96021 0.93406 0.93227 1.91482 1.96734 1.62027 1.61423 1.17433 0.84344 0.98239 0.92501 1.91511 1.55234 1.94307 1.69917 1.20651 1.00745 1.00270 0.96383 1.22929 0.88681 1.00547 0.97074 1.21018 0.98473 0.86394 0.92217 0.93443 0.95077 0.88631 0.93927 0.91100 0.83817 0.84016 0.83449 0.93496 0.90810 0.91882 0.95336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 11.16 55.49 0.62 -24.60 16 2 C 0.00 0.10 4.93 -17.43 -0.09 0.02 16 3 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.72 9.63 -15.06 -0.15 -6.87 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.60 -14.13 3.03 -171.74 -0.52 -14.66 16 10 C 0.17 3.94 5.45 -3.36 -0.02 3.92 16 11 C 0.04 0.65 5.44 -3.46 -0.02 0.63 16 12 N -0.48 -7.92 4.67 -170.52 -0.80 -8.72 16 13 C 0.15 2.16 5.65 -83.75 -0.47 1.69 16 14 C -0.16 -1.99 8.83 -39.37 -0.35 -2.34 16 15 C -0.09 -1.08 10.02 -39.55 -0.40 -1.48 16 16 C 0.02 0.26 7.30 -39.36 -0.29 -0.03 16 17 F -0.14 -1.89 17.18 2.25 0.04 -1.85 16 18 C 0.10 1.33 7.30 -39.39 -0.29 1.04 16 19 F -0.13 -1.89 17.18 2.25 0.04 -1.85 16 20 C -0.16 -2.22 9.12 -39.33 -0.36 -2.57 16 21 C 0.04 0.57 4.30 -3.70 -0.02 0.55 16 22 C 0.15 2.84 6.69 -3.61 -0.02 2.82 16 23 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.10 2.40 6.11 -51.93 -0.32 2.08 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 28 H 0.14 1.55 5.80 -52.49 -0.30 1.25 16 29 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.15 1.97 7.15 -52.49 -0.38 1.59 16 31 H 0.05 0.75 7.81 -51.93 -0.41 0.34 16 32 H 0.07 0.97 6.90 -51.93 -0.36 0.61 16 33 H 0.06 1.17 7.95 -51.93 -0.41 0.75 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -28.11 285.84 -7.56 -35.67 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -3.76 Total: -1.57 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.46 Total: -2.62 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.70 Total: -47.98 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.11 -7.56 -35.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082548696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.843 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds