Wall clock time and date at job start Mon Mar 30 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.39813 * 110.99945 * 172.61055 * 12 11 10 14 14 C 1.38898 * 120.03610 * 124.03065 * 13 12 11 15 15 C 1.38145 * 119.98971 * 179.74298 * 14 13 12 16 16 C 1.38410 * 120.07507 * 0.50973 * 15 14 13 17 17 F 1.35104 * 119.96187 * 179.74711 * 16 15 14 18 18 C 1.38668 * 120.07846 * 359.76510 * 16 15 14 19 19 F 1.35101 * 119.99520 * 180.02562 * 18 16 15 20 20 C 1.38328 * 120.00396 * 359.97438 * 18 16 15 21 21 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 22 22 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 23 23 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 25 25 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 26 26 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 27 27 H 1.08995 * 109.42457 * 173.94854 * 11 10 9 28 28 H 1.08002 * 120.00825 * 359.97438 * 14 13 12 29 29 H 1.07998 * 119.96161 * 180.25397 * 15 14 13 30 30 H 1.07996 * 120.03420 * 180.02562 * 20 18 16 31 31 H 1.09001 * 109.49186 * 303.14219 * 21 12 11 32 32 H 1.09000 * 109.51153 * 183.07955 * 21 12 11 33 33 H 1.09004 * 109.62440 * 350.90141 * 22 9 7 34 34 H 1.09004 * 109.62907 * 111.27775 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8356 -5.6366 -2.8104 14 6 1.9829 -6.4069 -2.9506 15 6 2.0467 -7.3785 -3.9305 16 6 0.9724 -7.5785 -4.7800 17 9 1.0392 -8.5260 -5.7408 18 6 -0.1723 -6.8073 -4.6463 19 9 -1.2201 -7.0043 -5.4761 20 6 -0.2417 -5.8371 -3.6628 21 6 2.0102 -4.6146 -1.0325 22 6 1.8303 -3.6617 0.1539 23 1 -0.4851 0.8399 0.0004 24 1 -0.6867 -2.6167 -0.7035 25 1 0.0888 -1.3354 -1.6717 26 1 1.2942 -3.0054 -3.0036 27 1 -0.4378 -3.4179 -3.0099 28 1 2.8236 -6.2488 -2.2913 29 1 2.9374 -7.9800 -4.0365 30 1 -1.1331 -5.2365 -3.5580 31 1 2.8259 -4.2606 -1.6630 32 1 2.2425 -5.6140 -0.6644 33 1 2.7815 -3.5379 0.6717 34 1 1.0884 -4.0657 0.8427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082548696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:49 Heat of formation + Delta-G solvation = -39.795002 kcal Electronic energy + Delta-G solvation = -20218.634568 eV Core-core repulsion = 16787.858727 eV Total energy + Delta-G solvation = -3430.775842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.46955 -49.54111 -41.21663 -38.63375 -36.04626 -33.38969 -32.45661 -31.37066 -30.24925 -27.84373 -25.30123 -25.09142 -23.27411 -22.87429 -20.97442 -19.36218 -18.72278 -18.11422 -17.97173 -17.30986 -16.99574 -16.59515 -15.98067 -15.81442 -15.70482 -15.43134 -15.26049 -15.11701 -14.93158 -14.62243 -13.90284 -13.52927 -13.26673 -13.18971 -12.91837 -12.67029 -12.39671 -12.36783 -12.11962 -11.95750 -11.62139 -11.55816 -10.71165 -10.56553 -10.01474 -8.89199 -8.71103 -7.89366 -5.33764 -0.08560 0.02466 1.48124 1.49961 1.58563 2.26023 2.50757 2.62645 2.94208 3.27292 3.36406 3.59496 3.62522 3.96650 3.98581 4.13635 4.24484 4.37330 4.50796 4.52218 4.59370 4.76665 4.81299 4.86452 4.91114 5.02705 5.03639 5.23227 5.32717 5.60090 5.61556 5.66627 5.96616 6.21812 6.35485 7.11490 7.81356 8.34744 9.17995 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.004304 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.934777 B = 6504.440447 C = 6820.372272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.614 5.614 10 C 0.182 3.818 11 C 0.054 3.946 12 N -0.491 5.491 13 C 0.134 3.866 14 C -0.150 4.150 15 C -0.081 4.081 16 C 0.017 3.983 17 F -0.141 7.141 18 C 0.082 3.918 19 F -0.139 7.139 20 C -0.162 4.162 21 C 0.046 3.954 22 C 0.140 3.860 23 H 0.250 0.750 24 H 0.003 0.997 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.166 0.834 29 H 0.177 0.823 30 H 0.146 0.854 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 -13.981 -7.502 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.393 4.393 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.073 4.073 12 N -0.205 5.205 13 C 0.035 3.965 14 C -0.171 4.171 15 C -0.100 4.100 16 C -0.004 4.004 17 F -0.120 7.120 18 C 0.061 3.939 19 F -0.117 7.117 20 C -0.183 4.183 21 C -0.081 4.081 22 C 0.015 3.985 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.184 0.816 29 H 0.194 0.806 30 H 0.164 0.836 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.134 -13.912 -7.150 16.179 hybrid contribution 0.054 1.123 -0.589 1.269 sum 4.188 -12.789 -7.739 15.524 Atomic orbital electron populations 1.70167 1.06677 1.25923 1.55465 1.25761 0.95985 1.01453 1.01235 0.85271 0.78290 0.79671 0.77324 1.21361 1.22430 1.19095 1.19566 0.93164 0.85843 1.40719 0.90956 1.44437 1.34387 1.02279 1.52666 1.20764 0.88190 0.96470 0.88985 1.22876 1.00540 0.86756 0.97105 1.58876 1.35116 1.05497 1.21003 1.19062 0.92974 0.94811 0.89699 1.21550 0.97479 0.97727 1.00374 1.21187 0.97730 0.98107 0.92941 1.17743 0.96264 0.93053 0.93366 1.91479 1.96744 1.62114 1.61653 1.17557 0.84681 0.98865 0.92752 1.91490 1.55694 1.94399 1.70150 1.20653 1.00835 1.00345 0.96462 1.22818 0.88531 1.01266 0.95507 1.21191 0.98270 0.85227 0.93840 0.94050 0.97928 0.91838 0.94238 0.89597 0.81635 0.80575 0.83635 0.92954 0.87205 0.90982 0.96470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.05 11.16 21.65 0.24 -53.81 16 2 C -0.05 -2.64 4.93 84.86 0.42 -2.22 16 3 Si 0.97 43.45 29.59 68.60 2.03 45.48 16 4 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.26 -13.83 9.63 84.03 0.81 -13.02 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.61 -29.35 3.03 -697.26 -2.11 -31.47 16 10 C 0.18 8.46 5.45 86.50 0.47 8.93 16 11 C 0.05 1.91 5.44 86.54 0.47 2.38 16 12 N -0.49 -15.34 4.67 -693.40 -3.24 -18.58 16 13 C 0.13 3.52 5.65 38.17 0.22 3.74 16 14 C -0.15 -3.07 8.83 22.41 0.20 -2.87 16 15 C -0.08 -1.49 10.02 22.29 0.22 -1.27 16 16 C 0.02 0.39 7.30 22.41 0.16 0.56 16 17 F -0.14 -3.51 17.18 44.97 0.77 -2.74 16 18 C 0.08 2.15 7.30 22.39 0.16 2.31 16 19 F -0.14 -3.88 17.18 44.97 0.77 -3.11 16 20 C -0.16 -4.26 9.12 22.43 0.20 -4.05 16 21 C 0.05 1.34 4.30 86.38 0.37 1.71 16 22 C 0.14 5.32 6.69 86.35 0.58 5.89 16 23 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 24 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.06 3.34 6.11 -2.39 -0.01 3.32 16 26 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.09 2.75 6.66 -2.39 -0.02 2.74 16 28 H 0.17 2.67 5.80 -2.91 -0.02 2.65 16 29 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.15 3.80 7.15 -2.91 -0.02 3.78 16 31 H 0.05 1.48 7.81 -2.39 -0.02 1.46 16 32 H 0.11 2.41 6.90 -2.39 -0.02 2.40 16 33 H 0.07 2.55 7.95 -2.38 -0.02 2.53 16 34 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -61.53 285.84 3.87 -57.66 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.12 Total: 4.46 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 4.29 Total: 2.10 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -5.11 Total: -103.85 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.54 Total: -5.84 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -61.53 3.87 -57.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082548696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.867 kcal (2) G-P(sol) polarization free energy of solvation -61.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds