Wall clock time and date at job start Mon Mar 30 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36764 * 127.13988 * 2 1 4 4 C 1.50692 * 126.34301 * 359.97438 * 3 2 1 5 5 N 1.46900 * 109.47235 * 90.00075 * 4 3 2 6 6 N 1.30302 * 107.31467 * 179.97438 * 3 2 1 7 7 N 1.28529 * 110.08013 * 359.76735 * 6 3 2 8 8 C 1.31292 * 109.85489 * 0.38737 * 7 6 3 9 9 S 1.76200 * 126.48017 * 179.88465 * 8 7 6 10 10 C 1.80993 * 100.00068 * 359.69080 * 9 8 7 11 11 C 1.53006 * 109.46733 * 184.67180 * 10 9 8 12 12 C 1.50701 * 115.54950 * 300.33475 * 11 10 9 13 13 H 1.07994 * 119.99896 * 93.73086 * 12 11 10 14 14 C 1.37883 * 120.00040 * 273.73129 * 12 11 10 15 15 N 1.31513 * 119.99668 * 180.88196 * 14 12 11 16 16 Si 1.86801 * 119.99839 * 0.88570 * 14 12 11 17 17 H 1.48506 * 109.46912 * 274.80116 * 16 14 12 18 18 H 1.48495 * 109.47237 * 34.80259 * 16 14 12 19 19 H 1.48493 * 109.46992 * 154.80683 * 16 14 12 20 20 C 1.52999 * 117.52023 * 86.04177 * 11 10 9 21 21 C 1.53000 * 60.00094 * 107.47890 * 20 11 10 22 22 H 1.08995 * 109.47603 * 270.02552 * 1 2 3 23 23 H 1.09003 * 109.46775 * 30.02832 * 1 2 3 24 24 H 1.09005 * 109.46872 * 150.02162 * 1 2 3 25 25 H 1.09003 * 109.46849 * 209.99763 * 4 3 2 26 26 H 1.08999 * 109.46959 * 329.99512 * 4 3 2 27 27 H 1.00900 * 110.99907 * 180.02562 * 5 4 3 28 28 H 1.00895 * 110.99930 * 303.94707 * 5 4 3 29 29 H 1.08997 * 109.47509 * 64.67303 * 10 9 8 30 30 H 1.08995 * 109.47498 * 304.66779 * 10 9 8 31 31 H 0.97003 * 119.99219 * 180.02562 * 15 14 12 32 32 H 1.08996 * 117.49467 * 214.97254 * 20 11 10 33 33 H 1.09000 * 117.49758 * 359.97438 * 20 11 10 34 34 H 1.09002 * 117.49748 * 252.51145 * 21 20 11 35 35 H 1.08994 * 117.51961 * 107.48175 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2907 1.0902 0.0000 4 6 1.8623 2.5350 -0.0005 5 7 1.7226 3.0048 1.3843 6 7 3.5165 0.6483 0.0006 7 7 3.5223 -0.6369 0.0058 8 6 2.2894 -1.0884 0.0006 9 16 1.7928 -2.7790 0.0017 10 6 3.4144 -3.5829 0.0020 11 6 3.2326 -5.0976 -0.1145 12 6 2.4317 -5.7428 0.9871 13 1 1.3699 -5.8965 0.8638 14 6 3.0546 -6.1367 2.1525 15 7 2.3588 -6.7154 3.1067 16 14 4.8866 -5.8482 2.3758 17 1 5.6426 -6.9710 1.7649 18 1 5.2714 -4.5751 1.7153 19 1 5.2023 -5.7693 3.8247 20 6 3.1045 -5.6882 -1.5200 21 6 4.3868 -5.9036 -0.7137 22 1 -0.3634 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 2.6125 3.1362 -0.5143 26 1 0.9060 2.6301 -0.5148 27 1 1.4355 3.9718 1.4108 28 1 1.0800 2.4229 1.9004 29 1 3.9354 -3.3498 0.9307 30 1 3.9995 -3.2211 -0.8434 31 1 2.7970 -6.9921 3.9267 32 1 2.4408 -6.5433 -1.6479 33 1 3.1493 -4.9976 -2.3621 34 1 5.2755 -5.3547 -1.0254 35 1 4.5671 -6.9003 -0.3110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:54 Heat of formation + Delta-G solvation = 105.803326 kcal Electronic energy + Delta-G solvation = -18028.265303 eV Core-core repulsion = 15189.936217 eV Total energy + Delta-G solvation = -2838.329087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.66184 -37.04652 -35.52067 -34.55398 -32.13818 -30.40972 -28.12767 -27.65893 -25.70898 -25.23348 -22.51075 -21.67129 -20.80906 -19.17753 -17.62232 -16.71394 -16.38280 -16.14361 -15.82501 -14.97264 -14.76418 -14.20867 -13.88922 -13.81450 -13.51652 -13.07561 -12.99524 -12.66030 -12.58133 -12.08184 -11.44574 -11.12173 -10.87890 -10.53428 -10.45029 -10.24265 -10.13085 -9.90975 -9.70772 -9.66460 -9.13520 -9.08395 -8.62531 -8.49101 -7.09767 -6.15225 -4.20307 1.52299 1.76952 2.66846 2.86085 2.98275 3.30282 3.40328 3.45781 4.15676 4.34781 4.40633 4.47011 4.63489 4.88312 4.90821 5.11561 5.16333 5.22675 5.53250 5.61518 5.82377 5.90545 6.07288 6.08105 6.13623 6.42169 6.44167 6.60138 6.68030 6.79927 6.95351 7.01030 7.06807 7.65098 8.41492 8.86076 8.86288 9.47626 10.95933 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.026501 B = 0.005266 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.293441 B = 5315.528658 C = 5429.335880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.470 5.470 3 C 0.161 3.839 4 C 0.159 3.841 5 N -0.840 5.840 6 N -0.268 5.268 7 N -0.303 5.303 8 C 0.163 3.837 9 S 0.035 5.965 10 C -0.059 4.059 11 C 0.004 3.996 12 C -0.490 4.490 13 H 0.082 0.918 14 C 0.085 3.915 15 N -0.892 5.892 16 Si 0.874 3.126 17 H -0.275 1.275 18 H -0.257 1.257 19 H -0.293 1.293 20 C -0.175 4.175 21 C -0.188 4.188 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.045 0.955 27 H 0.350 0.650 28 H 0.343 0.657 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.266 0.734 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 15.238 -7.165 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.165 5.165 3 C -0.110 4.110 4 C 0.027 3.973 5 N -0.373 5.373 6 N -0.109 5.109 7 N -0.148 5.148 8 C -0.210 4.210 9 S 0.265 5.735 10 C -0.208 4.208 11 C 0.001 3.999 12 C -0.528 4.528 13 H 0.099 0.901 14 C -0.119 4.119 15 N -0.528 5.528 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.182 1.182 19 H -0.220 1.220 20 C -0.212 4.212 21 C -0.228 4.228 22 H 0.102 0.898 23 H 0.105 0.895 24 H 0.115 0.885 25 H 0.124 0.876 26 H 0.062 0.938 27 H 0.164 0.836 28 H 0.155 0.845 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.509 14.559 -6.901 16.731 hybrid contribution -0.173 0.769 0.097 0.794 sum -4.682 15.328 -6.805 17.412 Atomic orbital electron populations 1.22094 0.75538 1.05057 1.04305 1.46290 1.08383 1.05184 1.56683 1.24688 0.87248 0.91309 1.07723 1.19904 1.00254 0.86290 0.90892 1.58527 1.58588 1.07562 1.12576 1.73872 1.17328 1.03444 1.16211 1.74757 1.15958 1.02584 1.21472 1.27729 0.89925 0.97682 1.05697 1.85882 1.13841 0.82715 1.91038 1.23577 0.93296 0.98659 1.05254 1.19100 0.98999 0.87396 0.94359 1.20177 0.95757 1.39201 0.97630 0.90051 1.24932 0.98029 0.93608 0.95333 1.69878 1.36455 1.39672 1.06824 0.86950 0.86003 0.80023 0.76867 1.20041 1.18160 1.21959 1.22869 1.00436 1.03263 0.94622 1.23035 0.91924 1.01971 1.05825 0.89814 0.89489 0.88487 0.87586 0.93753 0.83552 0.84490 0.89029 0.90738 0.92412 0.89161 0.90617 0.90624 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.92 59.85 0.65 1.33 16 2 N -0.47 -6.81 3.21 -120.90 -0.39 -7.20 16 3 C 0.16 2.37 7.58 -153.99 -1.17 1.21 16 4 C 0.16 1.52 7.15 -4.98 -0.04 1.48 16 5 N -0.84 -7.40 9.61 -11.41 -0.11 -7.51 16 6 N -0.27 -5.14 12.18 32.99 0.40 -4.74 16 7 N -0.30 -6.32 11.60 30.68 0.36 -5.97 16 8 C 0.16 3.02 8.07 -88.33 -0.71 2.31 16 9 S 0.03 0.66 21.32 -107.50 -2.29 -1.63 16 10 C -0.06 -1.26 4.88 37.16 0.18 -1.08 16 11 C 0.00 0.10 0.88 -155.66 -0.14 -0.04 16 12 C -0.49 -13.05 8.88 -34.44 -0.31 -13.36 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 15 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 16 Si 0.87 21.56 24.91 -169.99 -4.24 17.32 16 17 H -0.27 -6.57 7.06 56.52 0.40 -6.17 16 18 H -0.26 -6.17 5.68 56.52 0.32 -5.85 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 C -0.17 -3.42 9.94 -26.73 -0.27 -3.68 16 21 C -0.19 -3.89 7.67 -26.73 -0.21 -4.10 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.09 0.52 7.25 -51.93 -0.38 0.14 16 24 H 0.10 0.89 7.86 -51.93 -0.41 0.48 16 25 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.29 7.27 -51.93 -0.38 -0.08 16 27 H 0.35 1.98 9.08 -39.29 -0.36 1.62 16 28 H 0.34 2.86 8.98 -39.29 -0.35 2.51 16 29 H 0.09 2.14 6.35 -51.92 -0.33 1.81 16 30 H 0.07 1.50 8.11 -51.92 -0.42 1.08 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.09 2.01 7.27 -51.93 -0.38 1.63 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -33.34 307.33 -7.71 -41.05 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.75 Total: 3.36 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.09 Total: -13.67 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 1.03 Total: -51.07 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.24 Total: 17.32 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.29 Total: -1.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.34 -7.71 -41.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.856 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds