Wall clock time and date at job start Mon Mar 30 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36764 * 127.13988 * 2 1 4 4 C 1.50692 * 126.34301 * 359.97438 * 3 2 1 5 5 N 1.46900 * 109.47235 * 90.00075 * 4 3 2 6 6 N 1.30302 * 107.31467 * 179.97438 * 3 2 1 7 7 N 1.28529 * 110.08013 * 359.76735 * 6 3 2 8 8 C 1.31292 * 109.85489 * 0.38737 * 7 6 3 9 9 S 1.76200 * 126.48017 * 179.88465 * 8 7 6 10 10 C 1.80993 * 100.00068 * 359.69080 * 9 8 7 11 11 C 1.53006 * 109.46733 * 184.67180 * 10 9 8 12 12 C 1.50701 * 115.54950 * 300.33475 * 11 10 9 13 13 H 1.07994 * 119.99896 * 93.73086 * 12 11 10 14 14 C 1.37883 * 120.00040 * 273.73129 * 12 11 10 15 15 N 1.31513 * 119.99668 * 180.88196 * 14 12 11 16 16 Si 1.86801 * 119.99839 * 0.88570 * 14 12 11 17 17 H 1.48506 * 109.46912 * 274.80116 * 16 14 12 18 18 H 1.48495 * 109.47237 * 34.80259 * 16 14 12 19 19 H 1.48493 * 109.46992 * 154.80683 * 16 14 12 20 20 C 1.52999 * 117.52023 * 86.04177 * 11 10 9 21 21 C 1.53000 * 60.00094 * 107.47890 * 20 11 10 22 22 H 1.08995 * 109.47603 * 270.02552 * 1 2 3 23 23 H 1.09003 * 109.46775 * 30.02832 * 1 2 3 24 24 H 1.09005 * 109.46872 * 150.02162 * 1 2 3 25 25 H 1.09003 * 109.46849 * 209.99763 * 4 3 2 26 26 H 1.08999 * 109.46959 * 329.99512 * 4 3 2 27 27 H 1.00900 * 110.99907 * 180.02562 * 5 4 3 28 28 H 1.00895 * 110.99930 * 303.94707 * 5 4 3 29 29 H 1.08997 * 109.47509 * 64.67303 * 10 9 8 30 30 H 1.08995 * 109.47498 * 304.66779 * 10 9 8 31 31 H 0.97003 * 119.99219 * 180.02562 * 15 14 12 32 32 H 1.08996 * 117.49467 * 214.97254 * 20 11 10 33 33 H 1.09000 * 117.49758 * 359.97438 * 20 11 10 34 34 H 1.09002 * 117.49748 * 252.51145 * 21 20 11 35 35 H 1.08994 * 117.51961 * 107.48175 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2907 1.0902 0.0000 4 6 1.8623 2.5350 -0.0005 5 7 1.7226 3.0048 1.3843 6 7 3.5165 0.6483 0.0006 7 7 3.5223 -0.6369 0.0058 8 6 2.2894 -1.0884 0.0006 9 16 1.7928 -2.7790 0.0017 10 6 3.4144 -3.5829 0.0020 11 6 3.2326 -5.0976 -0.1145 12 6 2.4317 -5.7428 0.9871 13 1 1.3699 -5.8965 0.8638 14 6 3.0546 -6.1367 2.1525 15 7 2.3588 -6.7154 3.1067 16 14 4.8866 -5.8482 2.3758 17 1 5.6426 -6.9710 1.7649 18 1 5.2714 -4.5751 1.7153 19 1 5.2023 -5.7693 3.8247 20 6 3.1045 -5.6882 -1.5200 21 6 4.3868 -5.9036 -0.7137 22 1 -0.3634 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 2.6125 3.1362 -0.5143 26 1 0.9060 2.6301 -0.5148 27 1 1.4355 3.9718 1.4108 28 1 1.0800 2.4229 1.9004 29 1 3.9354 -3.3498 0.9307 30 1 3.9995 -3.2211 -0.8434 31 1 2.7970 -6.9921 3.9267 32 1 2.4408 -6.5433 -1.6479 33 1 3.1493 -4.9976 -2.3621 34 1 5.2755 -5.3547 -1.0254 35 1 4.5671 -6.9003 -0.3110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:54 Heat of formation + Delta-G solvation = 81.852428 kcal Electronic energy + Delta-G solvation = -18029.303892 eV Core-core repulsion = 15189.936217 eV Total energy + Delta-G solvation = -2839.367675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.91520 -38.77787 -36.46984 -35.50342 -34.24945 -31.61194 -29.76479 -28.60182 -27.52458 -26.37247 -23.82614 -23.29691 -21.90632 -20.97316 -18.99072 -18.16708 -17.70010 -17.23526 -17.02253 -16.81475 -15.63326 -15.51919 -15.33246 -15.07660 -14.91131 -14.63530 -14.35621 -13.93499 -13.69543 -13.36910 -13.06482 -12.77186 -12.63003 -12.17669 -12.05216 -11.96593 -11.64618 -11.34145 -11.31095 -11.02650 -10.88799 -10.66827 -10.24326 -9.75254 -8.57639 -8.30200 -6.36828 0.11885 0.56192 1.24015 1.33288 1.39298 1.49045 1.64611 1.68722 2.35528 3.04095 3.20476 3.25314 3.62346 3.73939 3.86312 3.93920 4.18252 4.20821 4.31823 4.37973 4.43635 4.54137 4.62218 4.72433 4.76763 4.86022 4.91915 5.04744 5.24286 5.47246 5.66812 5.72758 6.02475 6.27757 6.50792 6.70927 7.33674 7.56357 8.84471 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.026501 B = 0.005266 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.293441 B = 5315.528658 C = 5429.335880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.462 5.462 3 C 0.183 3.817 4 C 0.161 3.839 5 N -0.854 5.854 6 N -0.319 5.319 7 N -0.341 5.341 8 C 0.145 3.855 9 S 0.038 5.962 10 C -0.053 4.053 11 C -0.024 4.024 12 C -0.478 4.478 13 H 0.045 0.955 14 C 0.035 3.965 15 N -0.940 5.940 16 Si 0.922 3.078 17 H -0.259 1.259 18 H -0.247 1.247 19 H -0.301 1.301 20 C -0.151 4.151 21 C -0.185 4.185 22 H 0.097 0.903 23 H 0.129 0.871 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.369 0.631 28 H 0.346 0.654 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.265 0.735 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 17.418 -8.717 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.156 5.156 3 C -0.089 4.089 4 C 0.028 3.972 5 N -0.389 5.389 6 N -0.159 5.159 7 N -0.186 5.186 8 C -0.231 4.231 9 S 0.268 5.732 10 C -0.202 4.202 11 C -0.026 4.026 12 C -0.516 4.516 13 H 0.063 0.937 14 C -0.164 4.164 15 N -0.579 5.579 16 Si 0.748 3.252 17 H -0.184 1.184 18 H -0.171 1.171 19 H -0.228 1.228 20 C -0.188 4.188 21 C -0.224 4.224 22 H 0.116 0.884 23 H 0.147 0.853 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.104 0.896 27 H 0.187 0.813 28 H 0.159 0.841 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.883 16.764 -8.479 19.411 hybrid contribution -0.219 0.227 0.546 0.631 sum -5.102 16.991 -7.933 19.433 Atomic orbital electron populations 1.22566 0.72389 1.07181 1.05941 1.46576 1.10116 1.03838 1.55069 1.25662 0.86230 0.93224 1.03785 1.20151 1.02322 0.82792 0.91896 1.58440 1.59317 1.08969 1.12178 1.73784 1.20006 1.02939 1.19139 1.74628 1.17585 1.03819 1.22536 1.27498 0.90412 0.98020 1.07135 1.85682 1.12236 0.83548 1.91760 1.23300 0.94649 0.97919 1.04316 1.18974 1.00642 0.88033 0.94961 1.20277 0.94569 1.38022 0.98707 0.93681 1.25612 1.01712 0.93805 0.95279 1.70001 1.38146 1.42111 1.07643 0.86160 0.81895 0.80772 0.76396 1.18399 1.17106 1.22816 1.22916 0.99252 1.02993 0.93650 1.23087 0.92812 1.01219 1.05320 0.88411 0.85277 0.88550 0.87130 0.89594 0.81340 0.84150 0.91687 0.89539 0.92550 0.89339 0.87702 0.88283 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 10.92 127.77 1.39 2.30 16 2 N -0.46 -12.42 3.21 -536.42 -1.72 -14.14 16 3 C 0.18 5.00 7.58 137.63 1.04 6.04 16 4 C 0.16 2.49 7.15 85.55 0.61 3.10 16 5 N -0.85 -12.33 9.61 -190.02 -1.83 -14.16 16 6 N -0.32 -12.01 12.18 -49.52 -0.60 -12.61 16 7 N -0.34 -14.19 11.60 -56.85 -0.66 -14.85 16 8 C 0.15 5.27 8.07 179.55 1.45 6.72 16 9 S 0.04 1.44 21.32 -56.49 -1.20 0.23 16 10 C -0.05 -2.22 4.88 71.98 0.35 -1.87 16 11 C -0.02 -1.04 0.88 -52.92 -0.05 -1.09 16 12 C -0.48 -25.92 8.88 25.60 0.23 -25.70 16 13 H 0.05 2.71 8.06 -2.91 -0.02 2.69 16 14 C 0.03 1.97 5.47 84.66 0.46 2.44 16 15 N -0.94 -57.48 13.96 21.45 0.30 -57.18 16 16 Si 0.92 44.75 24.91 68.60 1.71 46.46 16 17 H -0.26 -11.83 7.06 99.48 0.70 -11.13 16 18 H -0.25 -11.53 5.68 99.48 0.57 -10.97 16 19 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 20 C -0.15 -5.60 9.94 30.59 0.30 -5.30 16 21 C -0.18 -7.29 7.67 30.59 0.23 -7.06 16 22 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 23 H 0.13 0.87 7.25 -2.39 -0.02 0.86 16 24 H 0.10 1.53 7.86 -2.38 -0.02 1.51 16 25 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 0.66 7.27 -2.39 -0.02 0.64 16 27 H 0.37 2.89 9.08 -89.69 -0.81 2.08 16 28 H 0.35 4.70 8.98 -89.70 -0.81 3.89 16 29 H 0.06 3.06 6.35 -2.40 -0.02 3.04 16 30 H 0.09 3.40 8.11 -2.40 -0.02 3.38 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.08 3.43 7.27 -2.39 -0.02 3.42 16 Total: -1.00 -75.27 307.33 1.38 -73.88 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -0.64 Total: 12.77 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 6.03 Total: -20.40 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -4.51 Total: -112.95 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.71 Total: 46.46 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.20 Total: 0.23 kcal Total: -75.27 1.38 -73.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.737 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds