Wall clock time and date at job start Mon Mar 30 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99929 * 2 1 4 4 H 1.48498 * 109.46858 * 270.00018 * 3 2 1 5 5 H 1.48501 * 109.46655 * 29.99932 * 3 2 1 6 6 H 1.48492 * 109.46761 * 149.99720 * 3 2 1 7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99653 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47088 * 184.84354 * 9 7 2 11 11 C 1.46898 * 110.99719 * 285.63970 * 10 9 7 12 12 C 1.50709 * 109.46874 * 169.99741 * 11 10 9 13 13 C 1.33320 * 125.94923 * 89.97309 * 12 11 10 14 14 N 1.32120 * 114.57916 * 179.75271 * 13 12 11 15 15 C 1.29693 * 116.86184 * 0.47507 * 14 13 12 16 16 N 1.38607 * 124.94837 * 179.81797 * 15 14 13 17 17 N 1.36604 * 120.00047 * 359.41704 * 16 15 14 18 18 S 1.70963 * 110.10382 * 359.54680 * 15 14 13 19 19 C 1.46895 * 111.00270 * 161.68228 * 10 9 7 20 20 C 1.53003 * 117.49856 * 10.64517 * 19 10 9 21 21 C 1.53003 * 117.49974 * 302.02020 * 19 10 9 22 22 H 0.96997 * 120.00204 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47431 * 64.84259 * 9 7 2 24 24 H 1.08998 * 109.47192 * 304.83944 * 9 7 2 25 25 H 1.08999 * 109.47113 * 49.99961 * 11 10 9 26 26 H 1.09000 * 109.46971 * 289.99499 * 11 10 9 27 27 H 1.07997 * 122.71325 * 0.02562 * 13 12 11 28 28 H 0.97001 * 120.00606 * 179.69932 * 16 15 14 29 29 H 1.00898 * 111.00066 * 56.04404 * 17 16 15 30 30 H 1.00902 * 111.00325 * 180.02562 * 17 16 15 31 31 H 1.09007 * 115.54941 * 156.34531 * 19 10 9 32 32 H 1.08997 * 117.49802 * 359.97438 * 20 19 10 33 33 H 1.08997 * 117.50109 * 145.01976 * 20 19 10 34 34 H 1.08999 * 117.49784 * 214.97734 * 21 19 10 35 35 H 1.08994 * 117.49911 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2013 -3.6132 0.1181 11 6 2.9195 -3.8280 -1.1452 12 6 4.0475 -4.8022 -0.9223 13 6 3.9721 -6.1279 -1.0426 14 7 5.1025 -6.7670 -0.7991 15 6 6.1262 -6.0421 -0.4695 16 7 7.3875 -6.5363 -0.1758 17 7 7.6190 -7.8822 -0.2110 18 16 5.6954 -4.3877 -0.4575 19 6 1.5220 -4.8410 0.5528 20 6 -0.0080 -4.8372 0.5598 21 6 0.7631 -4.7962 1.8807 22 1 -0.4850 0.8400 0.0004 23 1 0.6913 -2.5955 -0.9298 24 1 0.5606 -2.5200 0.8437 25 1 3.3232 -2.8795 -1.4994 26 1 2.2328 -4.2313 -1.8895 27 1 3.0617 -6.6378 -1.3211 28 1 8.1048 -5.9269 0.0588 29 1 7.3756 -8.2675 -1.1112 30 1 8.5777 -8.0905 0.0246 31 1 2.0221 -5.7732 0.2901 32 1 -0.5105 -3.9236 0.2421 33 1 -0.5148 -5.7670 0.3015 34 1 0.7637 -5.6991 2.4913 35 1 0.7683 -3.8559 2.4318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086767560.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:25 Heat of formation + Delta-G solvation = 115.390811 kcal Electronic energy + Delta-G solvation = -18034.173929 eV Core-core repulsion = 15196.260587 eV Total energy + Delta-G solvation = -2837.913342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.53331 -38.07419 -36.73489 -33.72036 -32.55523 -30.47022 -28.78494 -26.57404 -24.85207 -23.05903 -22.62255 -21.64268 -19.64634 -19.51866 -18.70078 -16.85513 -16.47927 -16.33781 -15.25460 -15.22181 -14.87898 -14.30855 -14.24445 -13.79867 -13.04700 -12.96409 -12.41583 -12.10707 -11.71680 -11.41301 -11.13360 -10.90197 -10.85263 -10.69107 -10.60644 -10.12648 -9.86388 -9.63308 -9.29181 -9.24224 -9.08387 -8.82741 -8.43079 -7.31780 -7.08486 -6.03494 -4.04936 1.23115 1.31811 2.11209 2.95911 3.24156 3.31134 3.37777 3.42123 4.40396 4.44072 4.50563 4.95680 5.31451 5.32555 5.44756 5.59282 5.64674 5.73726 5.82778 6.12920 6.22052 6.24670 6.26871 6.35620 6.58262 6.66012 6.83744 7.20097 7.25146 7.28875 7.68256 7.79876 8.08523 8.17283 8.28344 8.51722 9.02091 9.59246 11.06941 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.005444 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.283913 B = 5142.429016 C = 6175.367063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.189 3.811 10 N -0.499 5.499 11 C 0.141 3.859 12 C -0.215 4.215 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.294 3.706 16 N -0.554 5.554 17 N -0.592 5.592 18 S 0.127 5.873 19 C 0.024 3.976 20 C -0.225 4.225 21 C -0.174 4.174 22 H 0.261 0.739 23 H -0.006 1.006 24 H 0.043 0.957 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.168 0.832 28 H 0.414 0.586 29 H 0.342 0.658 30 H 0.352 0.648 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 -11.907 -2.090 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.064 3.936 10 N -0.221 5.221 11 C 0.011 3.989 12 C -0.339 4.339 13 C -0.089 4.089 14 N -0.258 5.258 15 C -0.077 4.077 16 N -0.289 5.289 17 N -0.219 5.219 18 S 0.374 5.626 19 C -0.086 4.086 20 C -0.265 4.265 21 C -0.212 4.212 22 H 0.071 0.929 23 H 0.011 0.989 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.185 0.815 28 H 0.254 0.746 29 H 0.156 0.844 30 H 0.166 0.834 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.331 -11.511 -0.996 16.898 hybrid contribution 0.043 0.520 -1.358 1.455 sum 12.374 -10.991 -2.354 16.717 Atomic orbital electron populations 1.69946 1.06019 1.26800 1.50961 1.24958 0.94836 0.99212 0.95425 0.86532 0.79890 0.83207 0.78030 1.20740 1.21267 1.19751 1.21152 0.93483 0.89895 1.50061 0.91991 1.19889 0.90444 0.86849 0.96381 1.62025 1.28983 1.03332 1.27755 1.20287 0.90556 0.96493 0.91593 1.25546 0.97516 0.97970 1.12866 1.21248 0.95685 0.89970 1.02020 1.66327 0.98524 1.37446 1.23482 1.23275 0.89842 0.93938 1.00663 1.42183 1.06824 1.01823 1.78060 1.59942 1.28708 0.96399 1.36814 1.84056 1.06799 1.03078 1.68697 1.22678 0.90267 0.94997 1.00695 1.23582 0.96959 1.03104 1.02825 1.22960 1.04638 1.02638 0.90993 0.92908 0.98869 0.93924 0.88841 0.93534 0.81478 0.74582 0.84353 0.83419 0.87551 0.87519 0.90127 0.89723 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -13.92 8.58 -34.44 -0.30 -14.21 16 8 H 0.06 1.69 7.57 -52.49 -0.40 1.29 16 9 C 0.19 4.76 3.38 -4.97 -0.02 4.74 16 10 N -0.50 -10.62 4.64 -229.51 -1.07 -11.69 16 11 C 0.14 2.65 5.33 -4.97 -0.03 2.63 16 12 C -0.22 -3.58 5.62 -36.02 -0.20 -3.78 16 13 C 0.06 0.96 9.73 -19.15 -0.19 0.78 16 14 N -0.53 -8.51 10.40 -15.21 -0.16 -8.66 16 15 C 0.29 4.17 8.19 -87.68 -0.72 3.45 16 16 N -0.55 -5.88 6.63 29.77 0.20 -5.68 16 17 N -0.59 -5.47 10.21 60.35 0.62 -4.85 16 18 S 0.13 1.86 23.21 -107.50 -2.50 -0.63 16 19 C 0.02 0.45 5.83 -67.71 -0.39 0.05 16 20 C -0.23 -4.08 9.56 -26.73 -0.26 -4.33 16 21 C -0.17 -3.16 9.91 -26.73 -0.26 -3.42 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H -0.01 -0.17 7.82 -51.93 -0.41 -0.58 16 24 H 0.04 1.15 5.63 -51.93 -0.29 0.86 16 25 H 0.09 1.88 7.21 -51.93 -0.37 1.51 16 26 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 27 H 0.17 2.37 7.62 -52.49 -0.40 1.97 16 28 H 0.41 3.17 8.95 -185.15 -1.66 1.52 16 29 H 0.34 3.13 9.15 -181.36 -1.66 1.47 16 30 H 0.35 1.91 9.21 -181.36 -1.67 0.24 16 31 H 0.11 1.84 5.66 -51.93 -0.29 1.54 16 32 H 0.11 2.21 6.02 -51.93 -0.31 1.89 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.10 1.97 7.46 -51.93 -0.39 1.58 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -31.61 305.84 -13.29 -44.90 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.25 Total: 3.72 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.46 Total: -12.62 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.33 Total: -56.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.50 Total: -0.63 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.61 -13.29 -44.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086767560.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.295 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds