Wall clock time and date at job start Mon Mar 30 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99929 * 2 1 4 4 H 1.48498 * 109.46858 * 270.00018 * 3 2 1 5 5 H 1.48501 * 109.46655 * 29.99932 * 3 2 1 6 6 H 1.48492 * 109.46761 * 149.99720 * 3 2 1 7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99653 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47088 * 184.84354 * 9 7 2 11 11 C 1.46898 * 110.99719 * 285.63970 * 10 9 7 12 12 C 1.50709 * 109.46874 * 169.99741 * 11 10 9 13 13 C 1.33320 * 125.94923 * 89.97309 * 12 11 10 14 14 N 1.32120 * 114.57916 * 179.75271 * 13 12 11 15 15 C 1.29693 * 116.86184 * 0.47507 * 14 13 12 16 16 N 1.38607 * 124.94837 * 179.81797 * 15 14 13 17 17 N 1.36604 * 120.00047 * 359.41704 * 16 15 14 18 18 S 1.70963 * 110.10382 * 359.54680 * 15 14 13 19 19 C 1.46895 * 111.00270 * 161.68228 * 10 9 7 20 20 C 1.53003 * 117.49856 * 10.64517 * 19 10 9 21 21 C 1.53003 * 117.49974 * 302.02020 * 19 10 9 22 22 H 0.96997 * 120.00204 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47431 * 64.84259 * 9 7 2 24 24 H 1.08998 * 109.47192 * 304.83944 * 9 7 2 25 25 H 1.08999 * 109.47113 * 49.99961 * 11 10 9 26 26 H 1.09000 * 109.46971 * 289.99499 * 11 10 9 27 27 H 1.07997 * 122.71325 * 0.02562 * 13 12 11 28 28 H 0.97001 * 120.00606 * 179.69932 * 16 15 14 29 29 H 1.00898 * 111.00066 * 56.04404 * 17 16 15 30 30 H 1.00902 * 111.00325 * 180.02562 * 17 16 15 31 31 H 1.09007 * 115.54941 * 156.34531 * 19 10 9 32 32 H 1.08997 * 117.49802 * 359.97438 * 20 19 10 33 33 H 1.08997 * 117.50109 * 145.01976 * 20 19 10 34 34 H 1.08999 * 117.49784 * 214.97734 * 21 19 10 35 35 H 1.08994 * 117.49911 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2013 -3.6132 0.1181 11 6 2.9195 -3.8280 -1.1452 12 6 4.0475 -4.8022 -0.9223 13 6 3.9721 -6.1279 -1.0426 14 7 5.1025 -6.7670 -0.7991 15 6 6.1262 -6.0421 -0.4695 16 7 7.3875 -6.5363 -0.1758 17 7 7.6190 -7.8822 -0.2110 18 16 5.6954 -4.3877 -0.4575 19 6 1.5220 -4.8410 0.5528 20 6 -0.0080 -4.8372 0.5598 21 6 0.7631 -4.7962 1.8807 22 1 -0.4850 0.8400 0.0004 23 1 0.6913 -2.5955 -0.9298 24 1 0.5606 -2.5200 0.8437 25 1 3.3232 -2.8795 -1.4994 26 1 2.2328 -4.2313 -1.8895 27 1 3.0617 -6.6378 -1.3211 28 1 8.1048 -5.9269 0.0588 29 1 7.3756 -8.2675 -1.1112 30 1 8.5777 -8.0905 0.0246 31 1 2.0221 -5.7732 0.2901 32 1 -0.5105 -3.9236 0.2421 33 1 -0.5148 -5.7670 0.3015 34 1 0.7637 -5.6991 2.4913 35 1 0.7683 -3.8559 2.4318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086767560.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:25 Heat of formation + Delta-G solvation = 92.843826 kcal Electronic energy + Delta-G solvation = -18035.151640 eV Core-core repulsion = 15196.260587 eV Total energy + Delta-G solvation = -2838.891053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71731 -39.58023 -37.71628 -35.41213 -34.43561 -31.81232 -30.01819 -28.36104 -26.19573 -24.64821 -24.16355 -23.13166 -20.88660 -20.72379 -20.02389 -18.71554 -17.63934 -17.47089 -16.91944 -16.67277 -16.22360 -15.92554 -15.50312 -14.94695 -14.62679 -14.49414 -13.94146 -13.88266 -13.18151 -13.00945 -12.66758 -12.58446 -12.49034 -12.31557 -12.15478 -11.86617 -11.63064 -11.13927 -11.10050 -10.57784 -10.45652 -10.20377 -9.99257 -8.81820 -8.25938 -8.16784 -6.26797 0.06829 0.18060 0.93795 1.41981 1.43215 1.54594 2.02451 2.09416 2.42113 2.98325 3.14862 3.41918 3.52750 3.99962 4.13484 4.19266 4.28579 4.42502 4.45523 4.75761 4.78938 4.81713 4.99987 5.10663 5.23256 5.25307 5.33875 5.34905 5.50290 5.67988 6.09784 6.38271 6.43101 6.64239 6.74011 6.88406 7.31478 7.42404 8.93051 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.005444 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.283913 B = 5142.429016 C = 6175.367063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.209 3.791 10 N -0.509 5.509 11 C 0.150 3.850 12 C -0.246 4.246 13 C 0.076 3.924 14 N -0.557 5.557 15 C 0.302 3.698 16 N -0.538 5.538 17 N -0.601 5.601 18 S 0.133 5.867 19 C 0.017 3.983 20 C -0.219 4.219 21 C -0.171 4.171 22 H 0.264 0.736 23 H -0.033 1.033 24 H 0.017 0.983 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.181 0.819 28 H 0.429 0.571 29 H 0.346 0.654 30 H 0.375 0.625 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.985 -13.158 -1.872 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.084 3.916 10 N -0.231 5.231 11 C 0.020 3.980 12 C -0.370 4.370 13 C -0.075 4.075 14 N -0.283 5.283 15 C -0.070 4.070 16 N -0.272 5.272 17 N -0.232 5.232 18 S 0.380 5.620 19 C -0.092 4.092 20 C -0.258 4.258 21 C -0.209 4.209 22 H 0.072 0.928 23 H -0.015 1.015 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.198 0.802 28 H 0.272 0.728 29 H 0.161 0.839 30 H 0.192 0.808 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.359 -12.780 -0.766 19.238 hybrid contribution -0.457 0.779 -1.405 1.670 sum 13.903 -12.001 -2.171 18.494 Atomic orbital electron populations 1.70073 1.07589 1.27769 1.51859 1.25823 0.95662 1.02869 0.94912 0.85473 0.78648 0.78650 0.78430 1.19745 1.20896 1.19021 1.21465 0.93518 0.91193 1.49848 0.92250 1.19454 0.90285 0.88061 0.93834 1.61921 1.28222 1.03645 1.29351 1.20068 0.91172 0.96245 0.90497 1.25187 0.97858 0.97871 1.16111 1.21440 0.96246 0.89584 1.00231 1.66410 0.98903 1.37607 1.25368 1.23495 0.90609 0.93722 0.99144 1.42264 1.05963 1.02946 1.76056 1.59854 1.30819 0.95294 1.37202 1.83947 1.05729 1.03381 1.68961 1.22814 0.90645 0.94589 1.01166 1.23496 0.96469 1.03033 1.02819 1.22995 1.04204 1.02739 0.90955 0.92769 1.01515 0.96477 0.90990 0.93239 0.80210 0.72789 0.83882 0.80817 0.85341 0.90908 0.86878 0.86432 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.52 -29.46 8.58 25.60 0.22 -29.24 16 8 H 0.06 3.31 7.57 -2.91 -0.02 3.29 16 9 C 0.21 11.02 3.38 85.56 0.29 11.31 16 10 N -0.51 -22.14 4.64 -880.03 -4.08 -26.22 16 11 C 0.15 5.74 5.33 85.56 0.46 6.20 16 12 C -0.25 -8.03 5.62 24.58 0.14 -7.89 16 13 C 0.08 2.27 9.73 83.54 0.81 3.09 16 14 N -0.56 -16.57 10.40 -202.03 -2.10 -18.67 16 15 C 0.30 7.91 8.19 179.32 1.47 9.38 16 16 N -0.54 -9.86 6.63 -59.73 -0.40 -10.26 16 17 N -0.60 -9.29 10.21 37.02 0.38 -8.91 16 18 S 0.13 3.75 23.21 -56.49 -1.31 2.44 16 19 C 0.02 0.64 5.83 44.92 0.26 0.91 16 20 C -0.22 -7.89 9.56 30.60 0.29 -7.60 16 21 C -0.17 -6.11 9.91 30.60 0.30 -5.80 16 22 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 23 H -0.03 -1.86 7.82 -2.39 -0.02 -1.88 16 24 H 0.02 0.98 5.63 -2.39 -0.01 0.97 16 25 H 0.07 3.01 7.21 -2.39 -0.02 2.99 16 26 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 27 H 0.18 4.74 7.62 -2.91 -0.02 4.72 16 28 H 0.43 5.26 8.95 -215.49 -1.93 3.33 16 29 H 0.35 5.35 9.15 -210.56 -1.93 3.43 16 30 H 0.37 2.83 9.21 -210.55 -1.94 0.90 16 31 H 0.13 4.19 5.66 -2.38 -0.01 4.18 16 32 H 0.07 3.15 6.02 -2.39 -0.01 3.13 16 33 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.07 2.90 7.46 -2.39 -0.02 2.88 16 Total: -1.00 -68.64 305.84 -5.14 -73.78 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -4.64 Total: 16.04 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.70 Total: -18.87 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -5.92 Total: -119.62 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.31 Total: 2.44 kcal Total: -68.64 -5.14 -73.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086767560.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.621 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds