Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76201 * 99.99924 * 2 1 4 4 N 1.32526 * 119.14225 * 0.02562 * 3 2 1 5 5 C 1.33083 * 120.79530 * 179.72264 * 4 3 2 6 6 N 1.38617 * 120.43279 * 179.97438 * 5 4 3 7 7 C 1.39206 * 119.13090 * 359.97438 * 5 4 3 8 8 C 1.39165 * 118.43114 * 0.02562 * 7 5 4 9 9 N 1.38626 * 120.43653 * 180.02562 * 8 7 5 10 10 C 1.46498 * 120.00189 * 190.97536 * 9 8 7 11 11 C 1.46497 * 119.99548 * 10.96954 * 9 8 7 12 12 H 1.08992 * 109.47730 * 1.88643 * 11 9 8 13 13 C 1.53005 * 109.46829 * 121.88964 * 11 9 8 14 14 C 1.50701 * 109.46931 * 241.88369 * 11 9 8 15 15 H 1.07998 * 120.00117 * 0.02562 * 14 11 9 16 16 C 1.37885 * 120.00002 * 180.02562 * 14 11 9 17 17 N 1.31508 * 119.99902 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 119.99989 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47203 * 89.99681 * 18 16 14 20 20 H 1.48495 * 109.47170 * 209.99970 * 18 16 14 21 21 H 1.48505 * 109.47312 * 329.99926 * 18 16 14 22 22 N 1.32489 * 119.14712 * 179.72503 * 3 2 1 23 23 H 1.08989 * 109.47689 * 299.99833 * 1 2 3 24 24 H 1.09004 * 109.47039 * 60.00188 * 1 2 3 25 25 H 1.09006 * 109.47226 * 179.97438 * 1 2 3 26 26 H 0.97002 * 120.00681 * 359.97438 * 6 5 4 27 27 H 0.97004 * 120.00144 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.78273 * 179.97438 * 7 5 4 29 29 H 1.08999 * 109.47098 * 89.99297 * 10 9 8 30 30 H 1.09000 * 109.46911 * 209.99761 * 10 9 8 31 31 H 1.09007 * 109.46621 * 329.99314 * 10 9 8 32 32 H 1.08994 * 109.47501 * 59.99841 * 13 11 9 33 33 H 1.09003 * 109.46602 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.46615 * 299.99294 * 13 11 9 35 35 H 0.96997 * 120.00087 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0881 2.5718 0.0005 5 6 1.2812 3.8885 0.0061 6 7 0.2006 4.7567 0.0060 7 6 2.5827 4.3825 0.0119 8 6 3.6364 3.4735 0.0112 9 7 4.9489 3.9197 0.0174 10 6 6.0441 2.9775 -0.2249 11 6 5.2405 5.3337 0.2661 12 1 4.3101 5.8686 0.4564 13 6 6.1587 5.4584 1.4836 14 6 5.9227 5.9256 -0.9402 15 1 6.1189 5.3103 -1.8058 16 6 6.2963 7.2529 -0.9389 17 7 6.0577 8.0021 0.1152 18 14 7.1412 7.9868 -2.4345 19 1 6.1186 8.5326 -3.3627 20 1 8.0511 9.0782 -2.0031 21 1 7.9257 6.9329 -3.1268 22 7 3.3675 2.1698 0.0056 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.7037 4.4057 0.0016 27 1 0.3486 5.7154 0.0105 28 1 2.7702 5.4461 0.0161 29 1 6.2559 2.9335 -1.2933 30 1 6.9344 3.3103 0.3086 31 1 5.7568 1.9875 0.1296 32 1 7.0891 4.9235 1.2934 33 1 6.3761 6.5104 1.6684 34 1 5.6653 5.0303 2.3562 35 1 6.3202 8.9358 0.1161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087829256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = 56.658692 kcal Electronic energy + Delta-G solvation = -18373.323795 eV Core-core repulsion = 15532.863637 eV Total energy + Delta-G solvation = -2840.460158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13893 -36.90055 -34.92014 -33.13654 -31.43499 -29.80361 -29.17922 -28.70891 -25.71491 -25.25657 -23.96657 -22.05671 -20.07987 -17.80240 -17.68343 -16.50751 -15.94080 -15.40234 -15.05554 -14.73545 -14.65546 -14.07191 -14.02407 -13.55016 -13.21216 -13.00460 -12.65131 -12.45868 -11.62484 -11.44603 -11.32589 -11.15274 -10.91982 -10.74465 -10.62400 -10.45467 -10.22920 -10.12785 -9.75624 -9.13959 -8.69956 -8.54051 -8.25999 -7.50462 -6.91229 -6.17348 -4.26477 1.58143 1.66953 2.21959 2.37219 3.21333 3.28468 3.32029 3.76314 3.89670 4.32211 4.49273 5.12422 5.17766 5.30438 5.34839 5.45708 5.86995 5.93202 6.04338 6.16656 6.30200 6.45563 6.58241 6.68768 6.78573 6.93047 7.21918 7.26891 7.52578 7.58637 7.70016 7.90316 8.05377 8.29458 8.40463 8.72704 8.87825 9.41045 10.86136 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.005137 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.008830 B = 5449.845752 C = 5880.734304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.022 6.022 3 C 0.370 3.630 4 N -0.630 5.630 5 C 0.463 3.537 6 N -0.845 5.845 7 C -0.359 4.359 8 C 0.475 3.525 9 N -0.570 5.570 10 C 0.103 3.897 11 C 0.266 3.734 12 H 0.054 0.946 13 C -0.150 4.150 14 C -0.526 4.526 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 N -0.594 5.594 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.399 0.601 27 H 0.410 0.590 28 H 0.144 0.856 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.096 0.904 34 H 0.013 0.987 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.560 -9.086 0.950 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.209 5.791 3 C -0.011 4.011 4 N -0.366 5.366 5 C 0.220 3.780 6 N -0.388 5.388 7 C -0.394 4.394 8 C 0.230 3.770 9 N -0.277 5.277 10 C -0.041 4.041 11 C 0.166 3.834 12 H 0.072 0.928 13 C -0.208 4.208 14 C -0.564 4.564 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 N -0.327 5.327 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.228 0.772 27 H 0.240 0.760 28 H 0.162 0.838 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.032 0.968 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.649 -10.673 1.021 13.775 hybrid contribution -0.461 2.886 -0.825 3.036 sum -9.110 -7.787 0.196 11.986 Atomic orbital electron populations 1.23413 0.94942 1.05308 1.06904 1.85538 1.06001 0.95633 1.91897 1.23813 0.86141 0.98571 0.92561 1.68067 1.34504 1.02144 1.31842 1.17981 0.86819 0.87159 0.86018 1.42009 1.06017 1.07617 1.83190 1.21347 0.90910 1.02002 1.25191 1.18216 0.86536 0.87228 0.84988 1.47142 1.00573 1.10534 1.69421 1.21422 0.89800 0.92694 1.00181 1.19067 0.96391 0.73733 0.94237 0.92836 1.22135 0.98601 1.04090 0.96008 1.21363 1.39210 0.95309 1.00544 0.92052 1.24880 0.95588 0.96787 0.96383 1.69857 1.47200 1.07357 1.28413 0.86470 0.79424 0.78823 0.82588 1.20594 1.21070 1.19823 1.67920 1.20749 1.15197 1.28811 0.89512 0.89500 0.88473 0.77228 0.76014 0.83808 0.93933 0.91560 0.91556 0.94679 0.88561 0.96802 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.61 101.05 0.97 -0.49 16 2 S -0.02 -0.32 22.89 -107.50 -2.46 -2.78 16 3 C 0.37 6.91 7.85 -90.92 -0.71 6.20 16 4 N -0.63 -11.19 9.16 -12.74 -0.12 -11.31 16 5 C 0.46 8.20 7.81 -154.78 -1.21 6.99 16 6 N -0.84 -10.95 9.06 31.18 0.28 -10.66 16 7 C -0.36 -7.29 9.17 -38.88 -0.36 -7.65 16 8 C 0.47 10.33 7.34 -154.77 -1.14 9.20 16 9 N -0.57 -12.67 2.86 -175.32 -0.50 -13.18 16 10 C 0.10 2.03 9.89 59.85 0.59 2.62 16 11 C 0.27 6.43 2.54 -69.08 -0.18 6.25 16 12 H 0.05 1.37 5.49 -51.93 -0.28 1.09 16 13 C -0.15 -3.47 8.91 37.16 0.33 -3.14 16 14 C -0.53 -13.72 8.40 -34.44 -0.29 -14.00 16 15 H 0.06 1.64 7.71 -52.49 -0.40 1.24 16 16 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -23.73 11.32 55.43 0.63 -23.11 16 18 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 N -0.59 -12.35 9.18 -12.75 -0.12 -12.47 16 23 H 0.09 0.96 8.11 -51.92 -0.42 0.54 16 24 H 0.09 0.97 8.11 -51.91 -0.42 0.54 16 25 H 0.10 0.77 8.14 -51.91 -0.42 0.34 16 26 H 0.40 4.27 8.95 -40.82 -0.37 3.90 16 27 H 0.41 4.61 8.84 -40.82 -0.36 4.25 16 28 H 0.14 3.00 6.02 -52.49 -0.32 2.68 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.26 6.33 -51.93 -0.33 0.94 16 31 H 0.07 1.25 7.27 -51.92 -0.38 0.87 16 32 H 0.03 0.77 6.60 -51.93 -0.34 0.43 16 33 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -28.95 304.39 -9.14 -38.09 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.34 Total: 7.76 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -2.08 Total: 7.60 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: 0.18 Total: -70.73 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.46 Total: -2.78 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.95 -9.14 -38.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087829256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.746 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds