Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76201 * 99.99924 * 2 1 4 4 N 1.32526 * 119.14225 * 0.02562 * 3 2 1 5 5 C 1.33083 * 120.79530 * 179.72264 * 4 3 2 6 6 N 1.38617 * 120.43279 * 179.97438 * 5 4 3 7 7 C 1.39206 * 119.13090 * 359.97438 * 5 4 3 8 8 C 1.39165 * 118.43114 * 0.02562 * 7 5 4 9 9 N 1.38626 * 120.43653 * 180.02562 * 8 7 5 10 10 C 1.46498 * 120.00189 * 190.97536 * 9 8 7 11 11 C 1.46497 * 119.99548 * 10.96954 * 9 8 7 12 12 H 1.08992 * 109.47730 * 1.88643 * 11 9 8 13 13 C 1.53005 * 109.46829 * 121.88964 * 11 9 8 14 14 C 1.50701 * 109.46931 * 241.88369 * 11 9 8 15 15 H 1.07998 * 120.00117 * 0.02562 * 14 11 9 16 16 C 1.37885 * 120.00002 * 180.02562 * 14 11 9 17 17 N 1.31508 * 119.99902 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 119.99989 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47203 * 89.99681 * 18 16 14 20 20 H 1.48495 * 109.47170 * 209.99970 * 18 16 14 21 21 H 1.48505 * 109.47312 * 329.99926 * 18 16 14 22 22 N 1.32489 * 119.14712 * 179.72503 * 3 2 1 23 23 H 1.08989 * 109.47689 * 299.99833 * 1 2 3 24 24 H 1.09004 * 109.47039 * 60.00188 * 1 2 3 25 25 H 1.09006 * 109.47226 * 179.97438 * 1 2 3 26 26 H 0.97002 * 120.00681 * 359.97438 * 6 5 4 27 27 H 0.97004 * 120.00144 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.78273 * 179.97438 * 7 5 4 29 29 H 1.08999 * 109.47098 * 89.99297 * 10 9 8 30 30 H 1.09000 * 109.46911 * 209.99761 * 10 9 8 31 31 H 1.09007 * 109.46621 * 329.99314 * 10 9 8 32 32 H 1.08994 * 109.47501 * 59.99841 * 13 11 9 33 33 H 1.09003 * 109.46602 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.46615 * 299.99294 * 13 11 9 35 35 H 0.96997 * 120.00087 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0881 2.5718 0.0005 5 6 1.2812 3.8885 0.0061 6 7 0.2006 4.7567 0.0060 7 6 2.5827 4.3825 0.0119 8 6 3.6364 3.4735 0.0112 9 7 4.9489 3.9197 0.0174 10 6 6.0441 2.9775 -0.2249 11 6 5.2405 5.3337 0.2661 12 1 4.3101 5.8686 0.4564 13 6 6.1587 5.4584 1.4836 14 6 5.9227 5.9256 -0.9402 15 1 6.1189 5.3103 -1.8058 16 6 6.2963 7.2529 -0.9389 17 7 6.0577 8.0021 0.1152 18 14 7.1412 7.9868 -2.4345 19 1 6.1186 8.5326 -3.3627 20 1 8.0511 9.0782 -2.0031 21 1 7.9257 6.9329 -3.1268 22 7 3.3675 2.1698 0.0056 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.7037 4.4057 0.0016 27 1 0.3486 5.7154 0.0105 28 1 2.7702 5.4461 0.0161 29 1 6.2559 2.9335 -1.2933 30 1 6.9344 3.3103 0.3086 31 1 5.7568 1.9875 0.1296 32 1 7.0891 4.9235 1.2934 33 1 6.3761 6.5104 1.6684 34 1 5.6653 5.0303 2.3562 35 1 6.3202 8.9358 0.1161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087829256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = 39.600629 kcal Electronic energy + Delta-G solvation = -18374.063488 eV Core-core repulsion = 15532.863637 eV Total energy + Delta-G solvation = -2841.199851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.60781 -38.55834 -36.32045 -34.95107 -33.00861 -31.22961 -30.94345 -29.64666 -27.41251 -27.11847 -25.45482 -23.63515 -21.75716 -19.22873 -19.13387 -18.38444 -17.43454 -16.87420 -16.55143 -16.24266 -16.20805 -15.66899 -15.18470 -15.10369 -14.66944 -14.38033 -14.18828 -13.55507 -13.36631 -13.04691 -12.98566 -12.78621 -12.72000 -12.54868 -12.24575 -12.14425 -11.85542 -11.62033 -11.27290 -11.01968 -10.52570 -10.18410 -9.50817 -8.85776 -8.47696 -8.13343 -6.31580 0.18986 0.34902 0.72061 1.34386 1.40470 1.42888 1.52001 2.18796 2.43883 2.60217 2.98679 3.11291 3.86002 4.00156 4.32651 4.45319 4.48172 4.48432 4.64766 4.70276 4.78787 4.88221 5.00941 5.02641 5.05675 5.15425 5.39725 5.60400 5.71487 5.91421 6.12372 6.22463 6.39401 6.69551 6.73704 6.98463 7.33405 7.41968 8.86506 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.005137 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.008830 B = 5449.845752 C = 5880.734304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.013 6.013 3 C 0.353 3.647 4 N -0.622 5.622 5 C 0.468 3.532 6 N -0.820 5.820 7 C -0.384 4.384 8 C 0.456 3.544 9 N -0.583 5.583 10 C 0.109 3.891 11 C 0.273 3.727 12 H 0.034 0.966 13 C -0.137 4.137 14 C -0.539 4.539 15 H 0.049 0.951 16 C 0.027 3.973 17 N -0.910 5.910 18 Si 0.957 3.043 19 H -0.278 1.278 20 H -0.279 1.279 21 H -0.273 1.273 22 N -0.613 5.613 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.133 0.867 26 H 0.414 0.586 27 H 0.419 0.581 28 H 0.130 0.870 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 -10.052 0.583 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.218 5.782 3 C -0.027 4.027 4 N -0.358 5.358 5 C 0.222 3.778 6 N -0.364 5.364 7 C -0.420 4.420 8 C 0.213 3.787 9 N -0.291 5.291 10 C -0.034 4.034 11 C 0.172 3.828 12 H 0.052 0.948 13 C -0.196 4.196 14 C -0.578 4.578 15 H 0.067 0.933 16 C -0.173 4.173 17 N -0.549 5.549 18 Si 0.782 3.218 19 H -0.204 1.204 20 H -0.204 1.204 21 H -0.198 1.198 22 N -0.346 5.346 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.151 0.849 26 H 0.246 0.754 27 H 0.251 0.749 28 H 0.148 0.852 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.074 -11.644 0.656 15.411 hybrid contribution -0.224 3.090 -0.698 3.176 sum -10.298 -8.554 -0.042 13.388 Atomic orbital electron populations 1.23547 0.91661 1.07600 1.06851 1.85533 1.09519 0.92215 1.90909 1.24711 0.85764 1.00788 0.91413 1.68231 1.33847 1.01840 1.31896 1.18146 0.87074 0.87769 0.84830 1.41955 1.05682 1.07718 1.81076 1.21318 0.92070 1.01196 1.27389 1.18449 0.86504 0.88180 0.85538 1.47016 1.01465 1.09975 1.70686 1.21413 0.89422 0.92702 0.99907 1.18783 0.95307 0.74872 0.93863 0.94788 1.21957 0.98731 1.02826 0.96067 1.21511 1.39683 0.95680 1.00880 0.93281 1.25527 0.96066 0.97039 0.98691 1.69951 1.47661 1.07568 1.29682 0.85579 0.78479 0.78056 0.79653 1.20406 1.20411 1.19775 1.67978 1.21983 1.14607 1.30030 0.89467 0.89531 0.84911 0.75429 0.74870 0.85208 0.94440 0.91216 0.90709 0.94184 0.90496 0.95948 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.61 113.37 1.09 -1.23 16 2 S -0.01 -0.36 22.89 -56.49 -1.29 -1.65 16 3 C 0.35 12.83 7.85 180.45 1.42 14.24 16 4 N -0.62 -21.20 9.16 -194.23 -1.78 -22.98 16 5 C 0.47 16.14 7.81 133.01 1.04 17.17 16 6 N -0.82 -19.79 9.06 -55.25 -0.50 -20.29 16 7 C -0.38 -15.83 9.17 22.73 0.21 -15.62 16 8 C 0.46 20.18 7.34 132.99 0.98 21.16 16 9 N -0.58 -26.50 2.86 -708.60 -2.02 -28.52 16 10 C 0.11 4.36 9.89 127.77 1.26 5.62 16 11 C 0.27 13.53 2.54 44.25 0.11 13.64 16 12 H 0.03 1.82 5.49 -2.39 -0.01 1.81 16 13 C -0.14 -6.46 8.91 71.98 0.64 -5.82 16 14 C -0.54 -28.63 8.40 25.60 0.21 -28.41 16 15 H 0.05 2.67 7.71 -2.91 -0.02 2.65 16 16 C 0.03 1.43 5.30 84.66 0.45 1.88 16 17 N -0.91 -49.00 11.32 21.45 0.24 -48.76 16 18 Si 0.96 42.09 29.54 68.60 2.03 44.12 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 N -0.61 -25.45 9.18 -194.24 -1.78 -27.23 16 23 H 0.09 1.64 8.11 -2.40 -0.02 1.62 16 24 H 0.09 1.65 8.11 -2.39 -0.02 1.63 16 25 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.41 7.76 8.95 -92.71 -0.83 6.93 16 27 H 0.42 8.82 8.84 -92.71 -0.82 8.00 16 28 H 0.13 5.64 6.02 -2.91 -0.02 5.62 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 2.68 6.33 -2.39 -0.02 2.67 16 31 H 0.07 2.83 7.27 -2.38 -0.02 2.81 16 32 H 0.04 1.79 6.60 -2.39 -0.02 1.77 16 33 H 0.08 3.93 6.07 -2.39 -0.01 3.91 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -62.07 304.39 1.79 -60.28 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.51 Total: 22.41 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.41 Total: 22.62 kcal Atomic # 7 Polarization: -141.94 SS G_CDS: -5.84 Total: -147.78 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.29 Total: -1.65 kcal Total: -62.07 1.79 -60.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087829256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.877 kcal (2) G-P(sol) polarization free energy of solvation -62.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds