Wall clock time and date at job start Mon Mar 30 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47128 * 179.72554 * 12 10 9 14 14 C 1.47239 * 125.40750 * 90.00490 * 13 12 10 15 15 C 1.53639 * 103.80724 * 177.24600 * 14 13 12 16 16 H 1.08999 * 111.50303 * 247.47742 * 15 14 13 17 17 C 1.53193 * 110.79902 * 122.75439 * 15 14 13 18 18 N 1.47697 * 108.30170 * 196.05411 * 17 15 14 19 19 C 1.46721 * 113.20426 * 63.45314 * 18 17 15 20 20 C 1.53679 * 109.82145 * 296.56645 * 19 18 17 21 21 N 1.47046 * 106.98463 * 50.56770 * 20 19 18 22 22 C 1.33261 * 128.76780 * 128.40840 * 21 20 19 23 23 O 1.21582 * 123.25579 * 12.18777 * 22 21 20 24 24 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 27 27 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 28 28 H 1.09006 * 110.55852 * 295.82281 * 14 13 12 29 29 H 1.08995 * 110.56077 * 58.66211 * 14 13 12 30 30 H 1.08995 * 109.60695 * 314.90173 * 17 15 14 31 31 H 1.09002 * 109.60650 * 75.41839 * 17 15 14 32 32 H 1.00900 * 110.77272 * 188.88186 * 18 17 15 33 33 H 1.09007 * 109.41589 * 176.45578 * 19 18 17 34 34 H 1.09004 * 109.41585 * 56.66969 * 19 18 17 35 35 H 1.09007 * 109.94621 * 291.20164 * 20 19 18 36 36 H 1.08996 * 110.02455 * 169.98295 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1955 -5.9765 -0.0046 14 6 2.7552 -6.6275 1.1916 15 6 3.6255 -7.7576 0.6206 16 1 3.2149 -8.7383 0.8606 17 6 5.0740 -7.6245 1.1013 18 7 5.9275 -8.4694 0.2415 19 6 5.9403 -8.0396 -1.1612 20 6 4.5314 -8.1734 -1.7602 21 7 3.6061 -7.5010 -0.8361 22 6 2.6915 -6.5691 -1.1022 23 8 2.3420 -6.2809 -2.2304 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3906 0.0016 26 1 0.6209 -4.9225 0.8949 27 1 0.6128 -4.9187 -0.8850 28 1 3.3647 -5.9249 1.7600 29 1 1.9584 -7.0351 1.8138 30 1 5.3953 -6.5868 1.0112 31 1 5.1450 -7.9433 2.1412 32 1 6.8646 -8.5247 0.6114 33 1 6.6344 -8.6631 -1.7249 34 1 6.2609 -6.9993 -1.2186 35 1 4.2650 -9.2264 -1.8525 36 1 4.4944 -7.6936 -2.7382 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091750930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:03 Heat of formation + Delta-G solvation = -58.110907 kcal Electronic energy + Delta-G solvation = -20965.325839 eV Core-core repulsion = 17677.136027 eV Total energy + Delta-G solvation = -3288.189812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.35953 -40.05619 -38.50505 -36.98941 -35.99186 -34.47139 -33.36198 -32.70738 -29.43821 -28.83028 -26.78501 -25.17333 -23.93452 -22.40320 -21.27477 -20.53782 -19.94916 -18.18065 -17.94972 -17.66172 -16.92353 -16.73744 -16.38745 -16.04638 -15.87974 -15.69324 -15.20810 -15.13107 -14.84032 -14.49318 -14.21755 -13.68646 -13.55598 -13.18784 -13.05058 -12.83239 -12.48463 -12.46470 -12.31720 -12.23157 -12.14245 -11.56544 -11.30849 -10.79892 -10.15209 -10.06876 -9.59511 -9.25192 -8.50169 -5.99998 1.27863 1.34550 1.39197 1.51899 1.96519 2.04381 2.27909 2.72857 3.02754 3.15208 3.25648 3.61653 3.66616 3.81953 4.08207 4.17320 4.22588 4.32078 4.34162 4.40259 4.51847 4.60929 4.68683 4.76352 4.85509 5.02691 5.12799 5.36041 5.61121 5.77224 5.85067 5.95342 6.39209 6.53744 6.55675 7.06915 7.43374 7.50977 8.03792 8.66610 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031672 B = 0.004493 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.853310 B = 6230.708637 C = 6436.248356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.074 0.926 9 N -0.566 5.566 10 C 0.418 3.582 11 O -0.630 6.630 12 C 0.150 3.850 13 N -0.617 5.617 14 C 0.094 3.906 15 C 0.126 3.874 16 H 0.130 0.870 17 C 0.056 3.944 18 N -0.687 5.687 19 C 0.051 3.949 20 C 0.150 3.850 21 N -0.635 5.635 22 C 0.694 3.306 23 O -0.641 6.641 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.143 0.857 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.012 0.988 31 H 0.126 0.874 32 H 0.362 0.638 33 H 0.120 0.880 34 H 0.009 0.991 35 H 0.098 0.902 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 -18.168 5.662 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.092 0.908 9 N -0.203 5.203 10 C 0.205 3.795 11 O -0.518 6.518 12 C 0.024 3.976 13 N -0.353 5.353 14 C -0.028 4.028 15 C 0.023 3.977 16 H 0.147 0.853 17 C -0.074 4.074 18 N -0.320 5.320 19 C -0.079 4.079 20 C 0.028 3.972 21 N -0.373 5.373 22 C 0.396 3.604 23 O -0.524 6.524 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.161 0.839 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.144 0.856 30 H 0.030 0.970 31 H 0.144 0.856 32 H 0.182 0.818 33 H 0.138 0.862 34 H 0.027 0.973 35 H 0.116 0.884 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.347 -18.293 4.874 19.967 hybrid contribution 0.421 2.137 -0.274 2.195 sum 6.768 -16.156 4.600 18.110 Atomic orbital electron populations 1.69664 1.06778 1.29482 1.49747 1.26042 0.96573 1.02351 0.95991 0.84929 0.77951 0.76869 0.78564 1.19975 1.18971 1.19761 1.19616 0.92538 0.84066 1.50395 0.90759 1.41893 1.09425 1.04576 1.64436 1.21484 0.88646 0.86766 0.82653 1.90474 1.16061 1.88037 1.57193 1.20894 0.89416 0.81105 1.06207 1.46771 1.47869 1.33855 1.06762 1.22681 0.98459 0.93691 0.88010 1.22524 0.96579 0.99654 0.78982 0.85288 1.22508 0.91333 0.94602 0.98939 1.59764 1.17147 1.53631 1.01469 1.22319 0.96492 0.98578 0.90519 1.21759 0.86619 0.97578 0.91198 1.47458 1.37569 1.42253 1.10006 1.15991 0.80197 0.79927 0.84283 1.90830 1.67007 1.71005 1.23557 0.91093 0.76691 0.83936 0.88290 0.91060 0.85626 0.96980 0.85576 0.81810 0.86179 0.97260 0.88375 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 3 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 8 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -30.03 5.29 -306.98 -1.62 -31.65 16 10 C 0.42 20.96 7.85 87.66 0.69 21.65 16 11 O -0.63 -36.90 16.01 -3.08 -0.05 -36.95 16 12 C 0.15 5.58 6.51 85.64 0.56 6.13 16 13 N -0.62 -21.96 2.46 -843.40 -2.07 -24.04 16 14 C 0.09 2.29 7.31 86.45 0.63 2.92 16 15 C 0.13 2.69 4.06 45.00 0.18 2.88 16 16 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 17 C 0.06 1.04 6.09 86.21 0.52 1.57 16 18 N -0.69 -11.25 6.69 -510.81 -3.42 -14.67 16 19 C 0.05 1.00 6.74 86.57 0.58 1.59 16 20 C 0.15 3.67 7.12 86.50 0.62 4.29 16 21 N -0.64 -19.24 3.04 -810.94 -2.47 -21.71 16 22 C 0.69 27.93 8.32 179.69 1.49 29.43 16 23 O -0.64 -31.92 17.21 -3.97 -0.07 -31.99 16 24 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.40 19.82 7.90 -92.71 -0.73 19.09 16 26 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 27 H 0.10 3.72 7.88 -2.39 -0.02 3.71 16 28 H 0.07 1.92 7.64 -2.38 -0.02 1.90 16 29 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.01 0.31 7.97 -2.39 -0.02 0.29 16 31 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.36 4.33 8.90 -89.69 -0.80 3.53 16 33 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.07 1.99 7.95 -2.39 -0.02 1.97 16 Total: -1.00 -83.36 304.49 -1.24 -84.60 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.41 Total: 28.84 kcal Atomic # 6 Polarization: 44.99 SS G_CDS: 6.56 Total: 51.55 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -9.30 Total: -141.74 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -0.12 Total: -68.94 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -83.36 -1.24 -84.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091750930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.487 kcal (2) G-P(sol) polarization free energy of solvation -83.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds