Wall clock time and date at job start Mon Mar 30 2020 04:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36005 * 117.00182 * 2 1 4 4 C 1.38668 * 120.04034 * 0.02562 * 3 2 1 5 5 C 1.38234 * 120.08603 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.90754 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47470 * 24.99452 * 6 5 4 8 8 O 1.42904 * 109.47032 * 144.99895 * 6 5 4 9 9 C 1.50706 * 109.46986 * 264.99360 * 6 5 4 10 10 H 1.07995 * 119.99907 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99855 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00490 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 119.99858 * 180.02562 * 11 9 6 14 14 H 1.48507 * 109.46971 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47397 * 119.99589 * 13 11 9 16 16 H 1.48500 * 109.47108 * 239.99859 * 13 11 9 17 17 C 1.38220 * 120.17876 * 0.02562 * 5 4 3 18 18 C 1.38669 * 120.09095 * 359.97438 * 17 5 4 19 19 O 1.36000 * 120.04204 * 180.02562 * 18 17 5 20 20 C 1.42897 * 117.00329 * 359.97438 * 19 18 17 21 21 C 1.38973 * 120.04785 * 179.72388 * 3 2 1 22 22 O 1.36097 * 120.08778 * 359.97438 * 21 3 2 23 23 C 1.42908 * 117.00066 * 89.99690 * 22 21 3 24 24 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47220 * 299.99844 * 1 2 3 26 26 H 1.08996 * 109.47672 * 59.99788 * 1 2 3 27 27 H 1.08000 * 119.95770 * 0.02562 * 4 3 2 28 28 H 0.96690 * 113.99967 * 59.99598 * 8 6 5 29 29 H 0.96992 * 120.00120 * 180.02562 * 12 11 9 30 30 H 1.08006 * 119.95474 * 179.97438 * 17 5 4 31 31 H 1.09005 * 109.47083 * 180.02562 * 20 19 18 32 32 H 1.09000 * 109.47309 * 300.00542 * 20 19 18 33 33 H 1.08996 * 109.47192 * 60.00519 * 20 19 18 34 34 H 1.09005 * 109.46752 * 60.00020 * 23 22 21 35 35 H 1.08993 * 109.47036 * 179.97438 * 23 22 21 36 36 H 1.08997 * 109.47176 * 300.00083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0005 5 6 1.9186 3.6075 0.0000 6 6 1.0949 4.8694 0.0000 7 1 0.1165 4.6646 0.4346 8 8 1.7590 5.8717 0.7723 9 6 0.9236 5.3574 -1.4155 10 1 1.3666 4.8085 -2.2333 11 6 0.2014 6.5048 -1.6664 12 7 -0.3385 7.1730 -0.6707 13 14 -0.0115 7.1093 -3.4210 14 1 0.6873 6.1861 -4.3509 15 1 -1.4571 7.1515 -3.7581 16 1 0.5665 8.4712 -3.5489 17 6 3.2987 3.6852 -0.0016 18 6 4.0603 2.5263 -0.0021 19 8 5.4180 2.6040 -0.0032 20 6 5.9931 3.9121 -0.0043 21 6 3.4342 1.2856 0.0058 22 8 4.1780 0.1460 0.0120 23 6 4.5381 -0.4007 -1.2583 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2135 2.3188 0.0014 28 1 2.6376 6.1045 0.4425 29 1 -0.8469 7.9799 -0.8473 30 1 3.7845 4.6498 -0.0024 31 1 7.0802 3.8311 -0.0055 32 1 5.6683 4.4511 -0.8942 33 1 5.6697 4.4519 0.8857 34 1 5.1257 0.3296 -1.8147 35 1 5.1285 -1.3049 -1.1106 36 1 3.6352 -0.6434 -1.8186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091875649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:20 Heat of formation + Delta-G solvation = -156.175133 kcal Electronic energy + Delta-G solvation = -21060.830939 eV Core-core repulsion = 17703.803241 eV Total energy + Delta-G solvation = -3357.027698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79929 -39.95909 -38.88099 -38.45931 -36.33022 -34.33515 -31.79146 -30.59589 -29.03423 -28.67022 -27.99920 -27.04716 -24.80928 -22.93506 -22.30747 -19.63577 -19.09009 -18.27321 -18.14353 -17.44813 -17.18014 -16.74146 -16.66079 -16.43637 -15.94013 -15.68625 -15.47074 -15.11706 -14.93428 -14.16607 -13.80590 -13.62685 -13.34285 -12.98215 -12.95554 -12.82323 -12.71258 -12.45335 -12.40066 -12.21133 -12.13701 -11.58665 -11.13689 -10.94418 -10.76550 -10.38245 -9.16660 -9.15917 -8.17436 -6.44962 0.20836 0.36902 1.38491 1.41027 1.52601 1.88492 2.33435 2.50795 2.70589 2.94319 3.07573 3.84971 3.97715 4.05798 4.19782 4.30701 4.37799 4.40660 4.41343 4.44453 4.50755 4.53100 4.55201 4.71073 4.73867 4.79476 5.10057 5.12756 5.20075 5.38856 5.61156 5.83180 5.96457 6.05403 6.26926 6.64588 6.70598 7.25799 7.42556 8.85910 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.006453 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.037140 B = 4337.874624 C = 5051.388710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.317 6.317 3 C 0.146 3.854 4 C -0.236 4.236 5 C -0.015 4.015 6 C 0.262 3.738 7 H 0.041 0.959 8 O -0.572 6.572 9 C -0.572 4.572 10 H 0.055 0.945 11 C 0.032 3.968 12 N -0.895 5.895 13 Si 0.960 3.040 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.276 1.276 17 C -0.228 4.228 18 C 0.146 3.854 19 O -0.317 6.317 20 C 0.016 3.984 21 C -0.007 4.007 22 O -0.330 6.330 23 C 0.032 3.968 24 H 0.131 0.869 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.358 0.642 29 H 0.265 0.735 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.115 0.885 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -10.943 -1.382 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.230 6.230 3 C 0.099 3.901 4 C -0.255 4.255 5 C -0.016 4.016 6 C 0.205 3.795 7 H 0.058 0.942 8 O -0.377 6.377 9 C -0.610 4.610 10 H 0.074 0.926 11 C -0.171 4.171 12 N -0.532 5.532 13 Si 0.784 3.216 14 H -0.191 1.191 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.247 4.247 18 C 0.100 3.900 19 O -0.231 6.231 20 C -0.078 4.078 21 C -0.052 4.052 22 O -0.246 6.246 23 C -0.063 4.063 24 H 0.149 0.851 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.204 0.796 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.134 0.866 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.367 -11.285 -0.821 13.502 hybrid contribution -0.300 1.074 -1.306 1.717 sum 7.067 -10.211 -2.127 12.599 Atomic orbital electron populations 1.23395 0.76373 1.05794 1.02133 1.86063 1.23337 1.25373 1.88272 1.18937 0.90622 0.85064 0.95447 1.20975 1.00673 0.90884 1.12984 1.20781 0.94371 0.96390 0.90076 1.18275 0.89487 0.80947 0.90824 0.94152 1.86561 1.33787 1.60886 1.56433 1.21749 1.35799 1.10661 0.92785 0.92635 1.25837 0.93875 0.96389 1.00997 1.70191 1.33180 1.17022 1.32797 0.85506 0.78085 0.78283 0.79717 1.19113 1.20256 1.20158 1.20875 0.93742 0.97660 1.12393 1.18936 0.83418 0.92318 0.95347 1.86067 1.15853 1.32902 1.88236 1.23414 1.00337 0.81764 1.02287 1.17029 0.86650 0.84938 1.16612 1.86092 1.70113 1.37949 1.30470 1.23130 0.99659 0.99052 0.84422 0.85080 0.92169 0.92279 0.84444 0.79613 0.92623 0.83949 0.85215 0.92126 0.91929 0.93947 0.86635 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.32 -10.34 10.28 -79.66 -0.82 -11.16 16 3 C 0.15 5.44 6.70 22.55 0.15 5.59 16 4 C -0.24 -9.38 8.66 22.37 0.19 -9.18 16 5 C -0.02 -0.67 4.94 -19.87 -0.10 -0.77 16 6 C 0.26 13.30 3.07 29.10 0.09 13.39 16 7 H 0.04 2.26 8.05 -2.39 -0.02 2.24 16 8 O -0.57 -29.09 12.53 -148.98 -1.87 -30.95 16 9 C -0.57 -30.64 8.75 25.60 0.22 -30.41 16 10 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 11 C 0.03 1.74 5.40 84.65 0.46 2.20 16 12 N -0.90 -51.56 12.84 21.45 0.28 -51.28 16 13 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 C -0.23 -8.82 8.31 22.37 0.19 -8.63 16 18 C 0.15 5.39 6.70 22.55 0.15 5.54 16 19 O -0.32 -10.17 10.28 -79.62 -0.82 -10.99 16 20 C 0.02 0.37 9.81 113.37 1.11 1.48 16 21 C -0.01 -0.27 5.75 22.62 0.13 -0.14 16 22 O -0.33 -11.62 9.99 -70.50 -0.70 -12.32 16 23 C 0.03 0.84 11.13 113.37 1.26 2.10 16 24 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.06 1.40 7.66 -2.39 -0.02 1.38 16 26 H 0.06 1.39 7.66 -2.39 -0.02 1.38 16 27 H 0.14 5.12 6.29 -2.91 -0.02 5.10 16 28 H 0.36 15.73 7.38 -74.06 -0.55 15.18 16 29 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.14 5.01 4.84 -2.91 -0.01 5.00 16 31 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.06 1.37 7.66 -2.39 -0.02 1.35 16 33 H 0.06 1.39 7.66 -2.39 -0.02 1.37 16 34 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.35 309.76 3.63 -64.72 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.56 Total: 25.25 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 4.97 Total: -17.32 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.28 Total: -51.28 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -4.21 Total: -65.42 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -68.35 3.63 -64.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091875649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.454 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds