Wall clock time and date at job start Mon Mar 30 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36003 * 117.00083 * 2 1 4 4 C 1.38686 * 120.03900 * 359.97438 * 3 2 1 5 5 C 1.38211 * 120.08804 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.17708 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.95718 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47204 * 214.97708 * 7 6 5 9 9 O 1.42901 * 109.46663 * 334.98031 * 7 6 5 10 10 C 1.50700 * 109.46919 * 94.97238 * 7 6 5 11 11 H 1.08000 * 120.00435 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00029 * 179.97438 * 10 7 6 13 13 N 1.31515 * 119.99595 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00240 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.46974 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47012 * 120.00344 * 14 12 10 17 17 H 1.48498 * 109.47270 * 240.00644 * 14 12 10 18 18 C 1.38648 * 120.09135 * 359.97438 * 6 5 4 19 19 O 1.35991 * 120.04696 * 180.27995 * 18 6 5 20 20 C 1.42898 * 116.99850 * 269.72137 * 19 18 6 21 21 C 1.38949 * 120.04665 * 180.02562 * 3 2 1 22 22 O 1.36096 * 120.09315 * 359.96037 * 21 3 2 23 23 C 1.42903 * 116.99672 * 270.02154 * 22 21 3 24 24 H 1.08999 * 109.47074 * 299.99324 * 1 2 3 25 25 H 1.08991 * 109.47333 * 59.99662 * 1 2 3 26 26 H 1.09007 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.96158 * 0.04374 * 4 3 2 28 28 H 1.08000 * 119.91177 * 179.97438 * 5 4 3 29 29 H 0.96693 * 114.00605 * 59.99897 * 9 7 6 30 30 H 0.97003 * 119.99823 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47511 * 179.97438 * 20 19 18 32 32 H 1.08997 * 109.47698 * 300.00041 * 20 19 18 33 33 H 1.09002 * 109.47272 * 60.00168 * 20 19 18 34 34 H 1.08996 * 109.47454 * 299.99592 * 23 22 21 35 35 H 1.09008 * 109.47184 * 59.99763 * 23 22 21 36 36 H 1.08999 * 109.47138 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3754 -0.0005 5 6 1.9183 3.6074 -0.0011 6 6 3.2986 3.6852 -0.0016 7 6 3.9765 5.0312 -0.0016 8 1 4.8918 4.9771 -0.5911 9 8 3.1001 6.0058 -0.5709 10 6 4.3130 5.4241 1.4138 11 1 4.0616 4.7650 2.2316 12 6 4.9429 6.6246 1.6648 13 7 5.2495 7.4271 0.6690 14 14 5.3606 7.1114 3.4192 15 1 4.9141 6.0430 4.3490 16 1 6.8288 7.2953 3.5456 17 1 4.6715 8.3825 3.7577 18 6 4.0602 2.5266 -0.0011 19 8 5.4179 2.6042 0.0041 20 6 6.0706 2.6375 -1.2666 21 6 3.4339 1.2856 -0.0005 22 8 4.1779 0.1460 -0.0003 23 6 4.5326 -0.3968 1.2732 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2133 2.3189 -0.0002 28 1 1.3280 4.5118 -0.0019 29 1 2.2637 6.1076 -0.0965 30 1 5.6923 8.2719 0.8455 31 1 7.1489 2.7000 -1.1197 32 1 5.8313 1.7307 -1.8220 33 1 5.7297 3.5078 -1.8275 34 1 5.1178 0.3351 1.8300 35 1 3.6272 -0.6379 1.8304 36 1 5.1230 -1.3019 1.1307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091875653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:29 Heat of formation + Delta-G solvation = -128.053739 kcal Electronic energy + Delta-G solvation = -21345.099112 eV Core-core repulsion = 17989.290849 eV Total energy + Delta-G solvation = -3355.808263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35424 -38.47646 -37.39885 -36.40544 -34.82253 -32.16085 -29.94272 -29.68146 -27.58841 -26.85709 -26.10306 -25.89091 -23.11698 -21.69467 -20.47753 -18.27506 -17.02670 -16.84524 -16.79012 -15.88708 -15.80695 -15.05830 -14.97337 -14.66332 -14.50612 -14.29650 -14.19678 -13.33405 -12.98724 -12.67006 -12.34713 -12.13175 -12.03488 -11.61380 -11.33156 -11.24250 -11.00384 -10.94234 -10.87319 -10.47122 -10.09050 -9.98162 -9.43481 -9.07415 -8.63352 -8.36600 -8.15210 -7.50822 -6.01316 -4.18461 1.46775 1.79433 3.27725 3.33545 3.35813 3.40616 3.76402 4.19128 4.40511 4.57564 5.04442 5.17506 5.22572 5.27279 5.39656 5.47106 5.57336 5.65569 5.70440 5.77474 5.84533 5.85658 5.92746 5.98311 6.09812 6.27432 6.54695 6.74870 6.79027 6.99810 7.36262 7.68704 7.77833 7.83663 8.10676 8.20137 8.82069 9.27248 9.55149 11.02311 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.006496 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.022259 B = 4309.435994 C = 4687.422712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.094 3.906 4 C -0.201 4.201 5 C -0.075 4.075 6 C -0.109 4.109 7 C 0.267 3.733 8 H 0.073 0.927 9 O -0.561 6.561 10 C -0.551 4.551 11 H 0.057 0.943 12 C 0.079 3.921 13 N -0.861 5.861 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.119 3.881 19 O -0.316 6.316 20 C 0.041 3.959 21 C 0.039 3.961 22 O -0.323 6.323 23 C 0.039 3.961 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.345 0.655 30 H 0.260 0.740 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 -12.419 -1.404 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.049 3.951 4 C -0.220 4.220 5 C -0.093 4.093 6 C -0.110 4.110 7 C 0.210 3.790 8 H 0.090 0.910 9 O -0.364 6.364 10 C -0.589 4.589 11 H 0.075 0.925 12 C -0.127 4.127 13 N -0.497 5.497 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.209 1.209 18 C 0.074 3.926 19 O -0.232 6.232 20 C -0.053 4.053 21 C -0.006 4.006 22 O -0.240 6.240 23 C -0.055 4.055 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.190 0.810 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.558 -12.484 -1.895 13.796 hybrid contribution -0.570 0.380 1.489 1.639 sum -6.128 -12.104 -0.405 13.573 Atomic orbital electron populations 1.22998 0.79174 1.03336 1.01232 1.86100 1.20604 1.26566 1.89304 1.19049 0.90973 0.84610 1.00465 1.21080 0.99536 0.91878 1.09516 1.20677 0.93981 0.96825 0.97829 1.21669 0.93830 0.98510 0.97012 1.18360 0.88036 0.77980 0.94665 0.90995 1.86628 1.30774 1.62459 1.56536 1.21468 1.41091 1.04302 0.92026 0.92468 1.25018 0.94405 0.96263 0.96978 1.70079 1.38889 1.10258 1.30520 0.86564 0.78222 0.78405 0.84933 1.19673 1.20803 1.20896 1.18477 0.83884 0.89935 1.00302 1.86038 1.14600 1.93785 1.28798 1.22910 0.97405 1.00304 0.84702 1.18278 0.86593 0.86045 1.09643 1.86013 1.70485 1.38503 1.28953 1.22919 0.99304 0.98299 0.85023 0.92899 0.92822 0.88696 0.85458 0.85124 0.81018 0.92979 0.89196 0.93956 0.93281 0.93258 0.94123 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.87 10.28 -34.34 -0.35 -5.23 16 3 C 0.09 1.66 6.70 -39.15 -0.26 1.40 16 4 C -0.20 -3.30 9.04 -39.43 -0.36 -3.65 16 5 C -0.07 -1.40 9.30 -39.59 -0.37 -1.77 16 6 C -0.11 -2.40 5.02 -104.46 -0.52 -2.92 16 7 C 0.27 6.81 2.78 -29.03 -0.08 6.73 16 8 H 0.07 2.01 6.43 -51.93 -0.33 1.67 16 9 O -0.56 -14.14 12.38 -35.23 -0.44 -14.58 16 10 C -0.55 -15.23 8.75 -34.44 -0.30 -15.53 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 12 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 13 N -0.86 -25.18 12.84 55.43 0.71 -24.46 16 14 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.12 2.53 5.71 -39.15 -0.22 2.31 16 19 O -0.32 -6.80 9.47 -34.29 -0.32 -7.13 16 20 C 0.04 0.72 10.80 101.05 1.09 1.81 16 21 C 0.04 0.77 5.75 -39.03 -0.22 0.54 16 22 O -0.32 -5.99 9.99 -45.30 -0.45 -6.44 16 23 C 0.04 0.59 11.13 101.05 1.13 1.71 16 24 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.13 1.64 6.29 -52.48 -0.33 1.31 16 28 H 0.13 2.19 6.39 -52.49 -0.34 1.85 16 29 H 0.34 7.53 7.31 45.56 0.33 7.87 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.89 7.18 -51.93 -0.37 0.52 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -32.97 309.81 -4.35 -37.32 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.91 Total: 5.49 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 0.77 Total: -5.96 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.71 Total: -24.46 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.57 Total: -33.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.97 -4.35 -37.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091875653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.738 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds