Wall clock time and date at job start Mon Mar 30 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36003 * 117.00083 * 2 1 4 4 C 1.38686 * 120.03900 * 359.97438 * 3 2 1 5 5 C 1.38211 * 120.08804 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.17708 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.95718 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47204 * 214.97708 * 7 6 5 9 9 O 1.42901 * 109.46663 * 334.98031 * 7 6 5 10 10 C 1.50700 * 109.46919 * 94.97238 * 7 6 5 11 11 H 1.08000 * 120.00435 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00029 * 179.97438 * 10 7 6 13 13 N 1.31515 * 119.99595 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00240 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.46974 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47012 * 120.00344 * 14 12 10 17 17 H 1.48498 * 109.47270 * 240.00644 * 14 12 10 18 18 C 1.38648 * 120.09135 * 359.97438 * 6 5 4 19 19 O 1.35991 * 120.04696 * 180.27995 * 18 6 5 20 20 C 1.42898 * 116.99850 * 269.72137 * 19 18 6 21 21 C 1.38949 * 120.04665 * 180.02562 * 3 2 1 22 22 O 1.36096 * 120.09315 * 359.96037 * 21 3 2 23 23 C 1.42903 * 116.99672 * 270.02154 * 22 21 3 24 24 H 1.08999 * 109.47074 * 299.99324 * 1 2 3 25 25 H 1.08991 * 109.47333 * 59.99662 * 1 2 3 26 26 H 1.09007 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.96158 * 0.04374 * 4 3 2 28 28 H 1.08000 * 119.91177 * 179.97438 * 5 4 3 29 29 H 0.96693 * 114.00605 * 59.99897 * 9 7 6 30 30 H 0.97003 * 119.99823 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47511 * 179.97438 * 20 19 18 32 32 H 1.08997 * 109.47698 * 300.00041 * 20 19 18 33 33 H 1.09002 * 109.47272 * 60.00168 * 20 19 18 34 34 H 1.08996 * 109.47454 * 299.99592 * 23 22 21 35 35 H 1.09008 * 109.47184 * 59.99763 * 23 22 21 36 36 H 1.08999 * 109.47138 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3754 -0.0005 5 6 1.9183 3.6074 -0.0011 6 6 3.2986 3.6852 -0.0016 7 6 3.9765 5.0312 -0.0016 8 1 4.8918 4.9771 -0.5911 9 8 3.1001 6.0058 -0.5709 10 6 4.3130 5.4241 1.4138 11 1 4.0616 4.7650 2.2316 12 6 4.9429 6.6246 1.6648 13 7 5.2495 7.4271 0.6690 14 14 5.3606 7.1114 3.4192 15 1 4.9141 6.0430 4.3490 16 1 6.8288 7.2953 3.5456 17 1 4.6715 8.3825 3.7577 18 6 4.0602 2.5266 -0.0011 19 8 5.4179 2.6042 0.0041 20 6 6.0706 2.6375 -1.2666 21 6 3.4339 1.2856 -0.0005 22 8 4.1779 0.1460 -0.0003 23 6 4.5326 -0.3968 1.2732 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2133 2.3189 -0.0002 28 1 1.3280 4.5118 -0.0019 29 1 2.2637 6.1076 -0.0965 30 1 5.6923 8.2719 0.8455 31 1 7.1489 2.7000 -1.1197 32 1 5.8313 1.7307 -1.8220 33 1 5.7297 3.5078 -1.8275 34 1 5.1178 0.3351 1.8300 35 1 3.6272 -0.6379 1.8304 36 1 5.1230 -1.3019 1.1307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091875653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:29 Heat of formation + Delta-G solvation = -152.158514 kcal Electronic energy + Delta-G solvation = -21346.144374 eV Core-core repulsion = 17989.290849 eV Total energy + Delta-G solvation = -3356.853525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75242 -39.81114 -38.84604 -38.01496 -36.49344 -34.28162 -31.49960 -31.07323 -28.95593 -28.11446 -27.75972 -27.22037 -24.91589 -23.10327 -22.08220 -19.62894 -19.07773 -18.24754 -18.23746 -17.30064 -17.05932 -16.71154 -16.63120 -16.27602 -15.87796 -15.64918 -15.49963 -15.08326 -14.72366 -14.07252 -13.78036 -13.60238 -13.42277 -13.14511 -12.85965 -12.83845 -12.71881 -12.55277 -12.13172 -12.10717 -11.76382 -11.42031 -11.20877 -10.77080 -10.67900 -10.26015 -9.60269 -9.00250 -8.11834 -6.37316 0.04436 0.33448 1.38374 1.40207 1.52330 2.14217 2.34083 2.46250 2.84392 3.08144 3.14558 3.90484 4.01998 4.16749 4.30654 4.36079 4.38214 4.43803 4.44170 4.46018 4.50024 4.50876 4.55279 4.71430 4.75475 4.78104 5.13585 5.16302 5.29484 5.50726 5.65051 5.81366 6.04724 6.13008 6.41864 6.70224 6.74447 7.31151 7.48950 8.90860 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.006496 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.022259 B = 4309.435994 C = 4687.422712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.104 3.896 4 C -0.187 4.187 5 C -0.075 4.075 6 C -0.142 4.142 7 C 0.275 3.725 8 H 0.035 0.965 9 O -0.574 6.574 10 C -0.561 4.561 11 H 0.047 0.953 12 C 0.030 3.970 13 N -0.898 5.898 14 Si 0.957 3.043 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.273 1.273 18 C 0.101 3.899 19 O -0.342 6.342 20 C 0.041 3.959 21 C 0.025 3.975 22 O -0.336 6.336 23 C 0.037 3.963 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.170 0.830 28 H 0.147 0.853 29 H 0.359 0.641 30 H 0.263 0.737 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.048 0.952 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 -13.915 -0.576 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.058 3.942 4 C -0.206 4.206 5 C -0.093 4.093 6 C -0.143 4.143 7 C 0.217 3.783 8 H 0.053 0.947 9 O -0.379 6.379 10 C -0.598 4.598 11 H 0.065 0.935 12 C -0.173 4.173 13 N -0.535 5.535 14 Si 0.782 3.218 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.199 1.199 18 C 0.056 3.944 19 O -0.259 6.259 20 C -0.053 4.053 21 C -0.020 4.020 22 O -0.253 6.253 23 C -0.057 4.057 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.140 0.860 27 H 0.188 0.812 28 H 0.164 0.836 29 H 0.205 0.795 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.394 -13.997 -1.063 15.866 hybrid contribution -0.095 0.695 1.189 1.380 sum -7.489 -13.303 0.126 15.266 Atomic orbital electron populations 1.23425 0.76214 1.05767 1.02534 1.86101 1.23571 1.25370 1.88711 1.19122 0.90513 0.85904 0.98697 1.21409 1.01472 0.90265 1.07421 1.20888 0.92706 0.98646 0.97068 1.21374 0.95376 0.96783 1.00770 1.17940 0.87446 0.80071 0.92793 0.94738 1.86551 1.31569 1.62917 1.56880 1.21703 1.40952 1.04220 0.92960 0.93461 1.25810 0.94235 0.96258 1.00948 1.70195 1.39931 1.10754 1.32640 0.85546 0.78007 0.78227 0.80030 1.19390 1.20453 1.19863 1.18667 0.83739 0.90722 1.01223 1.85969 1.15316 1.93985 1.30588 1.23033 0.98301 1.00225 0.83719 1.18339 0.87743 0.85710 1.10183 1.85975 1.70626 1.37971 1.30689 1.23103 0.99880 0.98877 0.83865 0.91513 0.91436 0.85951 0.81222 0.83565 0.79482 0.92828 0.87138 0.92488 0.94895 0.94668 0.93373 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -9.09 10.28 -79.63 -0.82 -9.90 16 3 C 0.10 3.43 6.70 22.55 0.15 3.59 16 4 C -0.19 -5.60 9.04 22.37 0.20 -5.40 16 5 C -0.08 -2.72 9.30 22.27 0.21 -2.51 16 6 C -0.14 -6.34 5.02 -19.76 -0.10 -6.44 16 7 C 0.27 14.54 2.78 29.10 0.08 14.62 16 8 H 0.03 2.06 6.43 -2.39 -0.02 2.05 16 9 O -0.57 -29.67 12.38 -148.98 -1.84 -31.52 16 10 C -0.56 -31.74 8.75 25.60 0.22 -31.52 16 11 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 12 C 0.03 1.69 5.40 84.65 0.46 2.14 16 13 N -0.90 -53.67 12.84 21.45 0.28 -53.39 16 14 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 C 0.10 4.39 5.71 22.55 0.13 4.52 16 19 O -0.34 -15.26 9.47 -79.51 -0.75 -16.01 16 20 C 0.04 1.50 10.80 113.37 1.22 2.72 16 21 C 0.03 0.97 5.75 22.62 0.13 1.10 16 22 O -0.34 -12.16 9.99 -70.50 -0.70 -12.87 16 23 C 0.04 1.06 11.13 113.37 1.26 2.32 16 24 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 25 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 26 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.17 3.55 6.29 -2.91 -0.02 3.53 16 28 H 0.15 4.68 6.39 -2.91 -0.02 4.66 16 29 H 0.36 15.81 7.31 -74.06 -0.54 15.27 16 30 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.03 1.28 7.18 -2.39 -0.02 1.26 16 34 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -72.75 309.81 3.83 -68.93 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.56 Total: 21.98 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.08 Total: -13.50 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.28 Total: -53.39 kcal Atomic # 8 Polarization: -66.19 SS G_CDS: -4.12 Total: -70.31 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.75 3.83 -68.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091875653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.230 kcal (2) G-P(sol) polarization free energy of solvation -72.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds