Wall clock time and date at job start Mon Mar 30 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99592 * 2 1 4 4 C 1.50701 * 109.47260 * 90.00114 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27562 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.34771 * 119.99877 * 179.97438 * 2 1 3 13 13 O 1.21591 * 119.99865 * 180.02562 * 12 2 1 14 14 N 1.34782 * 120.00294 * 0.02562 * 12 2 1 15 15 C 1.46502 * 119.99917 * 179.97438 * 14 12 2 16 16 H 1.08994 * 110.34291 * 327.28107 * 15 14 12 17 17 C 1.51096 * 110.38898 * 89.69514 * 15 14 12 18 18 C 1.30522 * 111.10375 * 135.24565 * 17 15 14 19 19 C 1.51100 * 111.10543 * 0.02562 * 18 17 15 20 20 H 1.09000 * 110.38581 * 224.75095 * 19 18 17 21 21 C 1.50697 * 110.48811 * 102.42287 * 19 18 17 22 22 O 1.20826 * 120.00187 * 244.64315 * 21 19 18 23 23 O 1.34232 * 119.99682 * 64.63791 * 21 19 18 24 24 C 1.54634 * 110.38352 * 205.00093 * 15 14 12 25 25 H 1.08998 * 109.46961 * 90.00626 * 1 2 3 26 26 H 1.08997 * 109.47067 * 210.00074 * 1 2 3 27 27 H 1.08998 * 109.47093 * 330.00362 * 1 2 3 28 28 H 1.09000 * 109.47197 * 329.99120 * 3 2 1 29 29 H 1.09007 * 109.46342 * 209.99692 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99785 * 359.97438 * 14 12 2 32 32 H 1.07999 * 124.44727 * 315.23077 * 17 15 14 33 33 H 1.08005 * 124.44630 * 179.97438 * 18 17 15 34 34 H 0.96698 * 116.99912 * 180.02562 * 23 21 19 35 35 H 1.09003 * 111.03829 * 334.58399 * 24 15 14 36 36 H 1.08996 * 111.04194 * 98.48225 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1213 2.8807 1.6726 7 7 3.5488 3.6207 0.6730 8 14 3.4258 3.4239 3.4338 9 1 4.2303 2.3931 4.1377 10 1 4.1641 4.7124 3.4337 11 1 2.1258 3.5979 4.1300 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1976 -3.6031 0.0005 16 1 3.1316 -3.5013 -0.5519 17 6 2.4673 -4.0552 1.4168 18 6 2.2127 -5.3273 1.5606 19 6 1.7313 -5.9358 0.2640 20 1 0.8688 -6.5778 0.4431 21 6 2.8384 -6.7175 -0.3949 22 8 3.2784 -6.3597 -1.4618 23 8 3.3358 -7.8112 0.2036 24 6 1.3292 -4.7265 -0.6121 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6084 2.0284 -0.5140 29 1 3.1499 1.1383 -0.5138 30 1 4.0217 4.4488 0.8503 31 1 0.4950 -2.3344 0.0005 32 1 2.8242 -3.4106 2.2064 33 1 2.3314 -5.8734 2.4848 34 1 4.0453 -8.2795 -0.2573 35 1 0.2678 -4.5021 -0.5067 36 1 1.5891 -4.8963 -1.6569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092183015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:36 Heat of formation + Delta-G solvation = -89.272766 kcal Electronic energy + Delta-G solvation = -20331.046101 eV Core-core repulsion = 17009.212259 eV Total energy + Delta-G solvation = -3321.833843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94439 -39.49398 -37.96477 -36.26798 -34.72471 -33.50366 -32.36589 -29.54308 -28.32019 -27.25032 -25.57106 -23.52644 -22.52217 -20.45767 -19.69427 -19.00612 -18.16333 -17.43824 -17.05497 -16.57045 -16.43565 -15.62285 -15.07874 -14.59864 -14.42700 -13.88571 -13.31174 -13.08650 -12.88595 -12.47635 -12.22975 -12.12318 -12.02092 -11.82660 -11.80461 -11.62258 -11.40201 -11.13740 -10.93335 -10.87202 -10.50832 -10.11315 -9.61005 -9.35835 -9.10573 -8.68476 -8.38343 -7.54078 -5.98957 -4.03465 1.79609 2.13333 2.90701 3.34498 3.39026 3.39608 3.46064 3.97577 4.23546 4.37876 4.46564 4.69567 4.85936 4.98995 5.12033 5.27702 5.34657 5.39599 5.59469 5.65745 5.83854 5.93281 6.04144 6.19231 6.25724 6.32902 6.55632 6.87902 6.96061 7.43509 7.61361 7.66977 7.79031 8.01110 8.30072 8.77121 8.97820 9.41984 9.62690 11.08870 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.004025 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.499354 B = 6954.377304 C = 7248.620599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.618 5.618 3 C 0.260 3.740 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.278 1.278 12 C 0.699 3.301 13 O -0.584 6.584 14 N -0.749 5.749 15 C 0.179 3.821 16 H 0.106 0.894 17 C -0.129 4.129 18 C -0.178 4.178 19 C -0.055 4.055 20 H 0.117 0.883 21 C 0.489 3.511 22 O -0.509 6.509 23 O -0.515 6.515 24 C -0.119 4.119 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.391 0.609 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.409 0.591 35 H 0.091 0.909 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 -20.222 -0.630 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.354 5.354 3 C 0.141 3.859 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.400 3.600 13 O -0.462 6.462 14 N -0.407 5.407 15 C 0.072 3.928 16 H 0.124 0.876 17 C -0.149 4.149 18 C -0.197 4.197 19 C -0.075 4.075 20 H 0.135 0.865 21 C 0.331 3.669 22 O -0.397 6.397 23 O -0.326 6.326 24 C -0.157 4.157 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.268 0.732 35 H 0.109 0.891 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.408 -19.653 -0.800 21.018 hybrid contribution 0.185 0.053 0.844 0.866 sum -7.223 -19.600 0.044 20.888 Atomic orbital electron populations 1.21527 0.81960 1.02137 1.00101 1.47443 1.05505 1.06479 1.75968 1.19186 0.92342 0.77120 0.97270 1.21440 1.36509 1.05978 0.92487 0.92603 1.24928 0.95439 0.96426 0.97342 1.69921 1.38603 1.14264 1.30732 0.86568 0.78283 0.77785 0.84802 1.20253 1.21201 1.20321 1.15958 0.85545 0.80262 0.78199 1.90892 1.11632 1.85959 1.57673 1.45317 1.09023 1.04182 1.82156 1.20605 0.96559 0.82442 0.93151 0.87641 1.24047 0.95638 0.96434 0.98749 1.22832 1.04422 0.95860 0.96560 1.20688 0.95173 0.96676 0.94928 0.86526 1.23299 0.82484 0.78200 0.82956 1.90741 1.58900 1.67509 1.22503 1.84529 1.53635 1.40134 1.54347 1.22807 1.00528 0.91735 1.00653 0.93975 0.93201 0.90654 0.95009 0.93813 0.92708 0.77340 0.84653 0.84511 0.73214 0.89072 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.20 59.85 0.61 1.99 16 2 N -0.62 -13.47 2.86 -188.74 -0.54 -14.01 16 3 C 0.26 6.98 5.16 -5.19 -0.03 6.96 16 4 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.70 15.22 8.28 -86.92 -0.72 14.50 16 13 O -0.58 -15.55 15.57 5.29 0.08 -15.47 16 14 N -0.75 -11.80 4.99 -58.77 -0.29 -12.10 16 15 C 0.18 2.55 3.24 -68.03 -0.22 2.33 16 16 H 0.11 1.85 7.56 -51.93 -0.39 1.46 16 17 C -0.13 -1.70 10.41 -35.70 -0.37 -2.08 16 18 C -0.18 -1.81 10.08 -35.70 -0.36 -2.16 16 19 C -0.06 -0.50 3.40 -91.86 -0.31 -0.82 16 20 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 21 C 0.49 5.16 7.64 36.00 0.28 5.43 16 22 O -0.51 -7.05 16.22 -18.75 -0.30 -7.35 16 23 O -0.51 -4.11 13.42 -39.26 -0.53 -4.63 16 24 C -0.12 -1.22 6.20 -25.00 -0.16 -1.37 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.63 6.36 -51.93 -0.33 0.30 16 27 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 29 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.39 4.88 6.15 -40.82 -0.25 4.63 16 32 H 0.14 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.41 1.64 9.10 45.56 0.41 2.06 16 35 H 0.09 0.71 7.82 -51.93 -0.41 0.30 16 36 H 0.10 1.10 6.95 -51.93 -0.36 0.74 16 LS Contribution 312.68 15.07 4.71 4.71 Total: -1.00 -36.84 312.68 -6.64 -43.48 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.79 Total: 3.60 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -1.70 Total: 10.95 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.10 Total: -52.40 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.75 Total: -27.46 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.84 -6.64 -43.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092183015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.790 kcal (2) G-P(sol) polarization free energy of solvation -36.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds